Clone Sequence Records
BO06033.3prime Sequence
839 bp (754 high quality bases) assembled on 2005-12-02
> BO06033.3prime
ATGGTCTAGAAAGCTTGCATTGTTCTGGGGTTTCGACCATTCGACGCTGA
GGATCAAGTGGTCGTAGCCGTGTCCATTGAGGATCTCGATGGCGGCGGCC
GCATCCTTGCGCTGCTTGAAGTGCACGTAGGCGAATCCCTTGCAGAGTCC
GGTGTTCTTGTCGCGGGCGAGATACATCTTGCTCTGCGGTCCAATCTTCT
TCACCAGCTCCTCGAGATCCGCCTCGGTCATCGACTCCGACAGATTCGAT
ATCCTAATGGCGGCCGTGTCGTCGCGTCCGCGCATTCCCAGCGCGCCCTT
TTGGCTGTCCTTGAGGAACGGCGGCACATACTTGCCGGACTTGGGCGCAT
CGACGGCGGCCGCGGCGGCTGCCGAAGCCTTCTTCTCCATCATATTCGTG
TCCATCGCCGTGCCCTTGTACGGGCAGTTGACCGACCAATGCTCACCGTT
GCAGATACGGCACTTGGCAATATTCTTGGTGGGATCTAGCAGCGGATCGT
TGGCCTTCTCGTCCTCCTTGGAGTTGAGGAACTGCATGATGATCTCCTCG
GACACCATGGTCGTCTGCGAGTTGGGGCCGGGCTTGTCGTTCTTCGAGTC
GCCGAACTTCGTCCAGGTGCGTCGCTTGGCCACCGTCTTGGGCACCACCT
GCTTGGATATCTTGTACGTGCGCACCACCTTCGTCTTCTTGTCGTCCTTG
TTGTACTTGTACTCCGTCACGTACTTCTGTCCGTTCTCCACCGTCTCCGT
CGTCGGAGGTAGTCCACCATAGTCGAGCTCCACCTCGTCCGCCCAGGAGG
ATTTGATCGTTTCAACGCCCGGCATGTCGACTGATAACT
BO06033.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 810 | CG8636-RA | 1..807 | 825..19 | 4035 | 100 | Minus |
CG10881-PA | 822 | CG10881-RA | 694..726 | 147..115 | 165 | 100 | Minus |
CG10881-PA | 822 | CG10881-RA | 763..806 | 78..35 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..898 | 825..19 | 4035 | 100 | Minus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 231..25 | 570 | 85 | Minus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 726..401 | 385 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609376..2610182 | 19..825 | 4035 | 100 | Plus |
3R | 32079331 | 3R | 20408936..20409142 | 231..25 | 570 | 85 | Minus |
3R | 32079331 | 3R | 20408420..20408745 | 726..401 | 370 | 74.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:39 has no hits.
BO06033.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:56 Download gff for
BO06033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:03 Download gff for
BO06033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:06 Download gff for
BO06033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..903 | 11..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:10 Download gff for
BO06033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..903 | 11..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:10 Download gff for
BO06033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609371..2610186 | 11..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:06 Download gff for
BO06033.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503404..2504219 | 11..830 | 99 | | Plus |
BO06033.5prime Sequence
839 bp (838 high quality bases) assembled on 2005-12-02
> BO06033.5prime
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACAATGCAAGCTTTCTAGACC
BO06033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 810 | CG8636-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG10881-PA | 822 | CG10881-RA | 694..726 | 695..727 | 165 | 100 | Plus |
CG10881-PA | 822 | CG10881-RA | 763..806 | 764..807 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..898 | 17..823 | 4035 | 100 | Plus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 611..817 | 570 | 85 | Plus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 116..441 | 385 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609376..2610182 | 823..17 | 4035 | 100 | Minus |
3R | 32079331 | 3R | 20408936..20409142 | 611..817 | 570 | 85 | Plus |
3R | 32079331 | 3R | 20408420..20408745 | 116..441 | 370 | 74.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:57:44 has no hits.
BO06033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:57 Download gff for
BO06033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:05 Download gff for
BO06033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-PA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:07 Download gff for
BO06033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..903 | 7..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:31 Download gff for
BO06033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 86..903 | 7..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:31 Download gff for
BO06033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609371..2610186 | 12..831 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:07 Download gff for
BO06033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503404..2504219 | 12..831 | 99 | | Minus |
BO06033.complete Sequence
841 bp (841 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630241
> BO06033.complete
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACAATGCAAGCTTTCTAGACCAT
BO06033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 810 | CG8636-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG10881-RA | 822 | CG10881-PA | 610..816 | 611..817 | 570 | 85 | Plus |
CG10881-RA | 822 | CG10881-PA | 94..419 | 116..441 | 370 | 74.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-RA | 1027 | CG8636-RA | 92..898 | 17..823 | 4035 | 100 | Plus |
CG10881-RA | 979 | CG10881-RA | 672..878 | 611..817 | 570 | 85 | Plus |
CG10881-RA | 979 | CG10881-RA | 156..481 | 116..441 | 370 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2609376..2610182 | 823..17 | 4035 | 100 | Minus |
3R | 32079331 | 3R | 20408936..20409142 | 611..817 | 570 | 85 | Plus |
3R | 32079331 | 3R | 20408420..20408745 | 116..441 | 370 | 74.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:39:28 has no hits.
BO06033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:33 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 1..810 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:03 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 112..929 | 7..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:51 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 92..898 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:33 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 112..929 | 7..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:43 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8636-RA | 92..898 | 17..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:43 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2609374..2610182 | 17..825 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:51 Download gff for
BO06033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2503407..2504215 | 17..825 | 99 | | Minus |
BO06033.pep Sequence
Translation from 16 to 841
> BO06033.pep
MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKV
VRTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFL
NSKEDEKANDPLLDPTKNIAKCRICNGEHWSVNCPYKGTAMDTNMMEKKA
SAAAAAAVDAPKSGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMT
EADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILN
GHGYDHLILSVEWSKPQNNASFLDH
BO06033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8636-PA | 269 | CG8636-PA | 1..269 | 1..269 | 1417 | 100 | Plus |
CG10881-PA | 273 | CG10881-PA | 1..272 | 4..267 | 989 | 70 | Plus |