Clone BO06033 Report

Search the DGRC for BO06033

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG8636-RA
Protein status:BO06033.pep: validated full length
Sequenced Size:841

Clone Sequence Records

BO06033.3prime Sequence

839 bp (754 high quality bases) assembled on 2005-12-02

> BO06033.3prime
ATGGTCTAGAAAGCTTGCATTGTTCTGGGGTTTCGACCATTCGACGCTGA
GGATCAAGTGGTCGTAGCCGTGTCCATTGAGGATCTCGATGGCGGCGGCC
GCATCCTTGCGCTGCTTGAAGTGCACGTAGGCGAATCCCTTGCAGAGTCC
GGTGTTCTTGTCGCGGGCGAGATACATCTTGCTCTGCGGTCCAATCTTCT
TCACCAGCTCCTCGAGATCCGCCTCGGTCATCGACTCCGACAGATTCGAT
ATCCTAATGGCGGCCGTGTCGTCGCGTCCGCGCATTCCCAGCGCGCCCTT
TTGGCTGTCCTTGAGGAACGGCGGCACATACTTGCCGGACTTGGGCGCAT
CGACGGCGGCCGCGGCGGCTGCCGAAGCCTTCTTCTCCATCATATTCGTG
TCCATCGCCGTGCCCTTGTACGGGCAGTTGACCGACCAATGCTCACCGTT
GCAGATACGGCACTTGGCAATATTCTTGGTGGGATCTAGCAGCGGATCGT
TGGCCTTCTCGTCCTCCTTGGAGTTGAGGAACTGCATGATGATCTCCTCG
GACACCATGGTCGTCTGCGAGTTGGGGCCGGGCTTGTCGTTCTTCGAGTC
GCCGAACTTCGTCCAGGTGCGTCGCTTGGCCACCGTCTTGGGCACCACCT
GCTTGGATATCTTGTACGTGCGCACCACCTTCGTCTTCTTGTCGTCCTTG
TTGTACTTGTACTCCGTCACGTACTTCTGTCCGTTCTCCACCGTCTCCGT
CGTCGGAGGTAGTCCACCATAGTCGAGCTCCACCTCGTCCGCCCAGGAGG
ATTTGATCGTTTCAACGCCCGGCATGTCGACTGATAACT

BO06033.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 810 CG8636-RA 1..807 825..19 4035 100 Minus
CG10881-PA 822 CG10881-RA 694..726 147..115 165 100 Minus
CG10881-PA 822 CG10881-RA 763..806 78..35 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..898 825..19 4035 100 Minus
CG10881-RA 979 CG10881-RA 672..878 231..25 570 85 Minus
CG10881-RA 979 CG10881-RA 156..481 726..401 385 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609376..2610182 19..825 4035 100 Plus
3R 32079331 3R 20408936..20409142 231..25 570 85 Minus
3R 32079331 3R 20408420..20408745 726..401 370 74.2 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:39 has no hits.

BO06033.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:56 Download gff for BO06033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:03 Download gff for BO06033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:06 Download gff for BO06033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..903 11..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:10 Download gff for BO06033.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..903 11..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:10 Download gff for BO06033.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2609371..2610186 11..830 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:06 Download gff for BO06033.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503404..2504219 11..830 99   Plus

BO06033.5prime Sequence

839 bp (838 high quality bases) assembled on 2005-12-02

> BO06033.5prime
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACAATGCAAGCTTTCTAGACC

BO06033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 810 CG8636-RA 1..807 17..823 4035 100 Plus
CG10881-PA 822 CG10881-RA 694..726 695..727 165 100 Plus
CG10881-PA 822 CG10881-RA 763..806 764..807 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..898 17..823 4035 100 Plus
CG10881-RA 979 CG10881-RA 672..878 611..817 570 85 Plus
CG10881-RA 979 CG10881-RA 156..481 116..441 385 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609376..2610182 823..17 4035 100 Minus
3R 32079331 3R 20408936..20409142 611..817 570 85 Plus
3R 32079331 3R 20408420..20408745 116..441 370 74.2 Plus
Blast to na_te.dros performed on 2015-02-11 04:57:44 has no hits.

BO06033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:37:57 Download gff for BO06033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:05 Download gff for BO06033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-PA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:07 Download gff for BO06033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..903 7..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:31 Download gff for BO06033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 86..903 7..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:31 Download gff for BO06033.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2609371..2610186 12..831 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:07 Download gff for BO06033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503404..2504219 12..831 99   Minus

BO06033.complete Sequence

841 bp (841 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630241

> BO06033.complete
GAAGTTATCAGTCGACATGCCGGGCGTTGAAACGATCAAATCCTCCTGGG
CGGACGAGGTGGAGCTCGACTATGGTGGACTACCTCCGACGACGGAGACG
GTGGAGAACGGACAGAAGTACGTGACGGAGTACAAGTACAACAAGGACGA
CAAGAAGACGAAGGTGGTGCGCACGTACAAGATATCCAAGCAGGTGGTGC
CCAAGACGGTGGCCAAGCGACGCACCTGGACGAAGTTCGGCGACTCGAAG
AACGACAAGCCCGGCCCCAACTCGCAGACGACCATGGTGTCCGAGGAGAT
CATCATGCAGTTCCTCAACTCCAAGGAGGACGAGAAGGCCAACGATCCGC
TGCTAGATCCCACCAAGAATATTGCCAAGTGCCGTATCTGCAACGGTGAG
CATTGGTCGGTCAACTGCCCGTACAAGGGCACGGCGATGGACACGAATAT
GATGGAGAAGAAGGCTTCGGCAGCCGCCGCGGCCGCCGTCGATGCGCCCA
AGTCCGGCAAGTATGTGCCGCCGTTCCTCAAGGACAGCCAAAAGGGCGCG
CTGGGAATGCGCGGACGCGACGACACGGCCGCCATTAGGATATCGAATCT
GTCGGAGTCGATGACCGAGGCGGATCTCGAGGAGCTGGTGAAGAAGATTG
GACCGCAGAGCAAGATGTATCTCGCCCGCGACAAGAACACCGGACTCTGC
AAGGGATTCGCCTACGTGCACTTCAAGCAGCGCAAGGATGCGGCCGCCGC
CATCGAGATCCTCAATGGACACGGCTACGACCACTTGATCCTCAGCGTCG
AATGGTCGAAACCCCAGAACAATGCAAGCTTTCTAGACCAT

BO06033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 810 CG8636-PA 1..807 17..823 4035 100 Plus
CG10881-RA 822 CG10881-PA 610..816 611..817 570 85 Plus
CG10881-RA 822 CG10881-PA 94..419 116..441 370 74.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-RA 1027 CG8636-RA 92..898 17..823 4035 100 Plus
CG10881-RA 979 CG10881-RA 672..878 611..817 570 85 Plus
CG10881-RA 979 CG10881-RA 156..481 116..441 370 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2609376..2610182 823..17 4035 100 Minus
3R 32079331 3R 20408936..20409142 611..817 570 85 Plus
3R 32079331 3R 20408420..20408745 116..441 370 74.2 Plus
Blast to na_te.dros performed on 2014-11-27 07:39:28 has no hits.

BO06033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:33 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 1..810 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:03 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 112..929 7..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:51 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 92..898 17..825 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:33 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 112..929 7..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:43 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
CG8636-RA 92..898 17..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:43 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
X 2609374..2610182 17..825 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:51 Download gff for BO06033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2503407..2504215 17..825 99   Minus

BO06033.pep Sequence

Translation from 16 to 841

> BO06033.pep
MPGVETIKSSWADEVELDYGGLPPTTETVENGQKYVTEYKYNKDDKKTKV
VRTYKISKQVVPKTVAKRRTWTKFGDSKNDKPGPNSQTTMVSEEIIMQFL
NSKEDEKANDPLLDPTKNIAKCRICNGEHWSVNCPYKGTAMDTNMMEKKA
SAAAAAAVDAPKSGKYVPPFLKDSQKGALGMRGRDDTAAIRISNLSESMT
EADLEELVKKIGPQSKMYLARDKNTGLCKGFAYVHFKQRKDAAAAIEILN
GHGYDHLILSVEWSKPQNNASFLDH

BO06033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG8636-PA 269 CG8636-PA 1..269 1..269 1417 100 Plus
CG10881-PA 273 CG10881-PA 1..272 4..267 989 70 Plus