Clone BO06036 Report

Search the DGRC for BO06036

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:36
Vector:pDNR-Dual
Associated Gene/Transcriptben-RA
Protein status:BO06036.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO06036.3prime Sequence

485 bp (484 high quality bases) assembled on 2005-12-02

> BO06036.3prime
ATGGTCTAGAAAGCTTGCGTCTTCGACGGCATATTTCTGGGTCCACTCGC
GGGCATTGCGAATGGCCTCCGCCTCGTTGACCTTCCACAACTCAGCCACA
TCGTTGGCCAGCGGATCGTCGGGATTGGGTGCACTGAGCAGTGCCTGAAT
GGATAGCAATATGGTCCGGATCTGCAGGGCTGGACTCCACTTGTCCTTCA
GCACGTCGAGGCAAATGCGGCCCAAACGATCGATGTTCGGATGGTAGATC
TTCGTGATGAAGCGCACTTTGGGCGCTGACATTGGATAGTCCTCCGGTAG
GAACAGCTCCAGCTTGAACACGCCGCCCTCGAAGGGCGAATCGTTCGGTC
CGGTCACGATCACATGGAAGTAACGGGCATTGTTCTCATCGGGAATGGCA
TTGATCCCAGGCACTGGCTCCTGCATCAAACGTTGAGTCTCCTTGATGAT
GCGACGTGGCAGGCTGGACATGTCGACTGATAACT

BO06036.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18319-PA 456 ben-RA 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 1810 CG18319-RE 166..618 471..19 2265 100 Minus
ben-RD 1852 CG18319-RD 208..660 471..19 2265 100 Minus
ben-RB 852 CG18319-RB 246..698 471..19 2265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998161..13998613 471..19 2265 100 Minus
2L 23513712 2L 14563181..14563558 73..450 435 74.3 Plus
Blast to na_te.dros performed on 2015-02-13 06:01:22 has no hits.

BO06036.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:02 Download gff for BO06036.3prime
Subject Subject Range Query Range Percent Splice Strand
ben-PA 1..456 16..471 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:12 Download gff for BO06036.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18319-PA 1..456 16..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:32 Download gff for BO06036.3prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..702 15..479 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:57 Download gff for BO06036.3prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..702 15..479 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:57 Download gff for BO06036.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13998151..13998617 15..479 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:32 Download gff for BO06036.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13892184..13892650 15..479 98   Minus

BO06036.5prime Sequence

485 bp (484 high quality bases) assembled on 2005-12-02

> BO06036.5prime
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACGCAAGCTTTCTAGACC

BO06036.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18319-PA 456 ben-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 1810 CG18319-RE 166..618 17..469 2265 100 Plus
ben-RD 1852 CG18319-RD 208..660 17..469 2265 100 Plus
ben-RB 852 CG18319-RB 246..698 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998161..13998613 17..469 2265 100 Plus
2L 23513712 2L 14563181..14563558 415..38 435 74.3 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:49 has no hits.

BO06036.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:03 Download gff for BO06036.5prime
Subject Subject Range Query Range Percent Splice Strand
ben-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:13 Download gff for BO06036.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18319-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:09 Download gff for BO06036.5prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..702 9..473 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:31:02 Download gff for BO06036.5prime
Subject Subject Range Query Range Percent Splice Strand
ben-RB 236..702 9..473 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:31:02 Download gff for BO06036.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13998151..13998617 9..473 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:09 Download gff for BO06036.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13892184..13892650 9..473 98   Plus

BO06036.complete Sequence

487 bp (487 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630243

> BO06036.complete
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACGCAAGCTTTCTAGACCAT

BO06036.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 456 CG18319-PE 1..453 17..469 2265 100 Plus
ben-RD 456 CG18319-PD 1..453 17..469 2265 100 Plus
ben-RB 456 CG18319-PB 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
ben-RE 1810 CG18319-RE 166..618 17..469 2265 100 Plus
ben-RD 1852 CG18319-RD 208..660 17..469 2265 100 Plus
ben-RB 852 CG18319-RB 246..698 17..469 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13998161..13998613 17..469 2265 100 Plus
2L 23513712 2L 14563181..14563558 415..38 435 74.3 Minus
Blast to na_te.dros performed on 2014-11-26 15:40:15 has no hits.

BO06036.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:35 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:07 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 227..693 9..473 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:07 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 246..698 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:36 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RA 227..693 9..473 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:55 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
ben-RB 246..698 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:55 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
X 13998161..13998613 17..471 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:07 Download gff for BO06036.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13892194..13892646 17..471 99   Plus

BO06036.pep Sequence

Translation from 16 to 487

> BO06036.pep
MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGG
VFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQ
IRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAVE
DASFLDH

BO06036.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
ben-PE 151 CG18319-PE 1..151 1..151 792 100 Plus
ben-PD 151 CG18319-PD 1..151 1..151 792 100 Plus
ben-PB 151 CG18319-PB 1..151 1..151 792 100 Plus
ben-PC 151 CG18319-PC 1..151 1..151 792 100 Plus
ben-PA 151 CG18319-PA 1..151 1..151 792 100 Plus