Clone Sequence Records
BO06036.3prime Sequence
485 bp (484 high quality bases) assembled on 2005-12-02
> BO06036.3prime
ATGGTCTAGAAAGCTTGCGTCTTCGACGGCATATTTCTGGGTCCACTCGC
GGGCATTGCGAATGGCCTCCGCCTCGTTGACCTTCCACAACTCAGCCACA
TCGTTGGCCAGCGGATCGTCGGGATTGGGTGCACTGAGCAGTGCCTGAAT
GGATAGCAATATGGTCCGGATCTGCAGGGCTGGACTCCACTTGTCCTTCA
GCACGTCGAGGCAAATGCGGCCCAAACGATCGATGTTCGGATGGTAGATC
TTCGTGATGAAGCGCACTTTGGGCGCTGACATTGGATAGTCCTCCGGTAG
GAACAGCTCCAGCTTGAACACGCCGCCCTCGAAGGGCGAATCGTTCGGTC
CGGTCACGATCACATGGAAGTAACGGGCATTGTTCTCATCGGGAATGGCA
TTGATCCCAGGCACTGGCTCCTGCATCAAACGTTGAGTCTCCTTGATGAT
GCGACGTGGCAGGCTGGACATGTCGACTGATAACT
BO06036.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18319-PA | 456 | ben-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 1810 | CG18319-RE | 166..618 | 471..19 | 2265 | 100 | Minus |
ben-RD | 1852 | CG18319-RD | 208..660 | 471..19 | 2265 | 100 | Minus |
ben-RB | 852 | CG18319-RB | 246..698 | 471..19 | 2265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13998161..13998613 | 471..19 | 2265 | 100 | Minus |
2L | 23513712 | 2L | 14563181..14563558 | 73..450 | 435 | 74.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:01:22 has no hits.
BO06036.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:02 Download gff for
BO06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:12 Download gff for
BO06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18319-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:32 Download gff for
BO06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..702 | 15..479 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:09:57 Download gff for
BO06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..702 | 15..479 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:09:57 Download gff for
BO06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13998151..13998617 | 15..479 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:32 Download gff for
BO06036.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13892184..13892650 | 15..479 | 98 | | Minus |
BO06036.5prime Sequence
485 bp (484 high quality bases) assembled on 2005-12-02
> BO06036.5prime
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACGCAAGCTTTCTAGACC
BO06036.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18319-PA | 456 | ben-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 1810 | CG18319-RE | 166..618 | 17..469 | 2265 | 100 | Plus |
ben-RD | 1852 | CG18319-RD | 208..660 | 17..469 | 2265 | 100 | Plus |
ben-RB | 852 | CG18319-RB | 246..698 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13998161..13998613 | 17..469 | 2265 | 100 | Plus |
2L | 23513712 | 2L | 14563181..14563558 | 415..38 | 435 | 74.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:49 has no hits.
BO06036.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:03 Download gff for
BO06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-PA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:13 Download gff for
BO06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18319-PA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:09 Download gff for
BO06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..702 | 9..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:31:02 Download gff for
BO06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 236..702 | 9..473 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:31:02 Download gff for
BO06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13998151..13998617 | 9..473 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:09 Download gff for
BO06036.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13892184..13892650 | 9..473 | 98 | | Plus |
BO06036.complete Sequence
487 bp (487 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630243
> BO06036.complete
GAAGTTATCAGTCGACATGTCCAGCCTGCCACGTCGCATCATCAAGGAGA
CTCAACGTTTGATGCAGGAGCCAGTGCCTGGGATCAATGCCATTCCCGAT
GAGAACAATGCCCGTTACTTCCATGTGATCGTGACCGGACCGAACGATTC
GCCCTTCGAGGGCGGCGTGTTCAAGCTGGAGCTGTTCCTACCGGAGGACT
ATCCAATGTCAGCGCCCAAAGTGCGCTTCATCACGAAGATCTACCATCCG
AACATCGATCGTTTGGGCCGCATTTGCCTCGACGTGCTGAAGGACAAGTG
GAGTCCAGCCCTGCAGATCCGGACCATATTGCTATCCATTCAGGCACTGC
TCAGTGCACCCAATCCCGACGATCCGCTGGCCAACGATGTGGCTGAGTTG
TGGAAGGTCAACGAGGCGGAGGCCATTCGCAATGCCCGCGAGTGGACCCA
GAAATATGCCGTCGAAGACGCAAGCTTTCTAGACCAT
BO06036.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 456 | CG18319-PE | 1..453 | 17..469 | 2265 | 100 | Plus |
ben-RD | 456 | CG18319-PD | 1..453 | 17..469 | 2265 | 100 | Plus |
ben-RB | 456 | CG18319-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-RE | 1810 | CG18319-RE | 166..618 | 17..469 | 2265 | 100 | Plus |
ben-RD | 1852 | CG18319-RD | 208..660 | 17..469 | 2265 | 100 | Plus |
ben-RB | 852 | CG18319-RB | 246..698 | 17..469 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13998161..13998613 | 17..469 | 2265 | 100 | Plus |
2L | 23513712 | 2L | 14563181..14563558 | 415..38 | 435 | 74.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:40:15 has no hits.
BO06036.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:35 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:07 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RA | 227..693 | 9..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:56:07 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 246..698 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:36 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RA | 227..693 | 9..473 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:55 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ben-RB | 246..698 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:55 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13998161..13998613 | 17..471 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:56:07 Download gff for
BO06036.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13892194..13892646 | 17..471 | 99 | | Plus |
BO06036.pep Sequence
Translation from 16 to 487
> BO06036.pep
MSSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGG
VFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQ
IRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAVE
DASFLDH
BO06036.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ben-PE | 151 | CG18319-PE | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PD | 151 | CG18319-PD | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PB | 151 | CG18319-PB | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PC | 151 | CG18319-PC | 1..151 | 1..151 | 792 | 100 | Plus |
ben-PA | 151 | CG18319-PA | 1..151 | 1..151 | 792 | 100 | Plus |