Clone Sequence Records
BO06038.3prime Sequence
790 bp (765 high quality bases) assembled on 2005-12-02
> BO06038.3prime
ATGGTCTAGAAAGCTTGCGCCGTTGTGCGTGATAGTCGGCGGCACATAGA
AGGTGTCTGCTGCCTTGGGCTTCTTCTTTTTGCCGAACCAGCGCTTGGGA
TAGTAGACCTTCTTCTTGTAGATCTGGATGTCGATGTCGTCCCGGTTCTC
GAAGAACCACAGGTTCTGCCGCTTCGCCTCCAGTTCGCTGAGGGTCTTCT
GGATGGTGGCCTTACGCTCCTCCACGCTCTGCGAATCCAGTTGTCGCTGC
ACCGCTGCCTCAAACTTCTTGGCCCACTCCTGATACGACTCGCCGTAGTC
GGCCAGCAGTTTGGGCTCAAACTTCTGCACATTGGCTTTGACGCTGTTCT
CCAGTAGCGATTGAATGGCATTCGATTTGCTACTCTTCTCAACGGCTTCC
TGCAGGGACTTCAGCAGCTCTTCGGATCCCTCCAGCTTGAGGCTTTCAAC
TATGCTCTGTGCGGCTAAAAGAGTCTCCTTGTGCAGGGCAGCTGAGTTCG
AGGCCAGAAAGCTGGAGGCCTCGGGCACTTGTCCGGTTAGGACATAGCCA
AGTAGGGCAACGTTCTGCTTCAGCTCTTTCAAGGACCCTTCGCCGGAGCC
CAATCGAACCATGGCGCGACCCAGTTTCTTCTCTTCGGTATTTTCGCTGG
CGTCGTCGGGGTAATTGCGAATGAACTTCACGCGAACTTTTTCCACTTCA
ACATTTTTGGCAGGAGGTTGAACTTGAGAGGACTCGAAGGGCTTGAACTC
CTTGGCGAAGGACCAGAAGGACTGTAGGGCCAGGGACTCC
BO06038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-PA | 1221 | CG4882-RA | 447..1218 | 790..19 | 3860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-RB | 1626 | CG4882-RB | 759..1530 | 790..19 | 3860 | 100 | Minus |
| CG4882-RA | 1397 | CG4882-RA | 530..1301 | 790..19 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23880913..23881588 | 19..694 | 3380 | 100 | Plus |
| 2R | 25286936 | 2R | 23881720..23881817 | 693..790 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:01:44 has no hits.
BO06038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:05 Download gff for
BO06038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-PA | 447..1221 | 18..790 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:17 Download gff for
BO06038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-PA | 447..1221 | 18..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:35 Download gff for
BO06038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 530..1301 | 19..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:10:42 Download gff for
BO06038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 530..1301 | 19..790 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:10:42 Download gff for
BO06038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23880913..23881587 | 19..693 | 100 | <- | Plus |
| 2R | 23881721..23881817 | 694..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:35 Download gff for
BO06038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19768436..19769110 | 19..693 | 100 | <- | Plus |
| arm_2R | 19769244..19769340 | 694..790 | 100 | | Plus |
BO06038.5prime Sequence
886 bp (743 high quality bases) assembled on 2005-12-02
> BO06038.5prime
GAAGTTATCAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCAC
CCAGGAGACTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCAC
GAGGGACCGGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGT
GGATTTGGATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGG
ACCGGCTGCTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTG
ATTCCCAGTGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGA
GACGATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACC
AGTTCTCTGGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCG
GTGGAATCTGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAA
CAACGAGTTGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCA
AGGAGTTCAAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAAT
GTTGAAGTGGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGA
CGCCAGCGAAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGAT
TGGGCTCCGGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTA
CTTGGCTATGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGC
CTCGAACTCAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCA
TAGTTGAAAGCCTCAAGCTGGAGGGATCCGAAAAGCTGCTGAAGTCCCTG
CAGGAAGCCGTTGAAAAGAGTAGCAATCGAATGCCA
BO06038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-PA | 1221 | CG4882-RA | 1..860 | 17..876 | 4250 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:10:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-RB | 1626 | CG4882-RB | 313..1183 | 17..886 | 4300 | 99.7 | Plus |
| CG4882-RA | 1397 | CG4882-RA | 84..954 | 17..886 | 4300 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23881720..23882063 | 560..217 | 1720 | 100 | Minus |
| 2R | 25286936 | 2R | 23881260..23881588 | 886..559 | 1565 | 99.1 | Minus |
| 2R | 25286936 | 2R | 23882114..23882317 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:10:19 has no hits.
BO06038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:07 Download gff for
BO06038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:18 Download gff for
BO06038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-PA | 1..870 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:12 Download gff for
BO06038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 75..953 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:31 Download gff for
BO06038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 75..953 | 9..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:31 Download gff for
BO06038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23881261..23881587 | 560..885 | 99 | <- | Minus |
| 2R | 23881721..23882060 | 220..559 | 100 | <- | Minus |
| 2R | 23882115..23882326 | 9..219 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:12 Download gff for
BO06038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19768784..19769110 | 560..885 | 99 | <- | Minus |
| arm_2R | 19769244..19769583 | 220..559 | 100 | <- | Minus |
| arm_2R | 19769638..19769849 | 9..219 | 98 | | Minus |
BO06038.complete Sequence
1252 bp (1252 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630244
> BO06038.complete
GAAGTTATCAGTCGACATGCTGCGATCGAGGATTTCCTGCGCACTGCCAC
CCAGGAGACTGGTGTCCTACTTCTCGGCGGAATTCAACAAGGTGGCGCAC
GAGGGACCGGCTAAATTCGCCGCAGGCAGCAGTCATGCCGTAACGAGTGT
GGATTTGGATGTGTTCGTCAATCCGGATAACCGTCCCATGGACCTGGTGG
ACCGGCTGCTCAAGCTCAGGAAACAGAAGGAGGCCAGTTTGGTGCCGCTG
ATTCCCAGTGTCTTGGTCAAGCAATTGCTGGACTCCACCAATCCGCAGGA
GACGATATCGGTGCTCCGTAATCCCATCCAGTACGGGCTCTTTGTGGACC
AGTTCTCTGGCTGCTTCCTGTTGGACTTCCTGCTGCACAATGGCCACGCG
GTGGAATCTGCCCAGCTGGCCACTATTCTCGTGGACAGAAACTTATGCAA
CAACGAGTTGCTGGAGTCCCTGGCCCTACAGTCCTTCTGGTCCTTCGCCA
AGGAGTTCAAGCCCTTCGAGTCCTCTCAAGTTCAACCTCCTGCCAAAAAT
GTTGAAGTGGAAAAAGTTCGCGTGAAGTTCATTCGCAATTACCCCGACGA
CGCCAGCGAAAATACCGAAGAGAAGAAACTGGGTCGCGCCATGGTTCGAT
TGGGCTCCGGCGAAGGGTCCTTGAAAGAGCTGAAGCAGAACGTTGCCCTA
CTTGGCTATGTCCTAACCGGACAAGTGCCCGAGGCCTCCAGCTTTCTGGC
CTCGAACTCAGCTGCCCTGCACAAGGAGACTCTTTTAGCCGCACAGAGCA
TAGTTGAAAGCCTCAAGCTGGAGGGATCCGAAGAGCTGCTGAAGTCCCTG
CAGGAAGCCGTTGAGAAGAGTAGCAAATCGAATGCCATTCAATCGCTACT
GGAGAACAGCGTCAAAGCCAATGTGCAGAAGTTTGAGCCCAAACTGCTGG
CCGACTACGGCGAGTCGTATCAGGAGTGGGCCAAGAAGTTTGAGGCAGCG
GTGCAGCGACAACTGGATTCGCAGAGCGTGGAGGAGCGTAAGGCCACCAT
CCAGAAGACCCTCAGCGAACTGGAGGCGAAGCGGCAGAACCTGTGGTTCT
TCGAGAACCGGGACGACATCGACATCCAGATCTACAAGAAGAAGGTCTAC
TATCCCAAGCGCTGGTTCGGCAAAAAGAAGAAGCCCAAGGCAGCAGACAC
CTTCTATGTGCCGCCGACTATCACGCACAACGGCGCAAGCTTTCTAGACC
AT
BO06038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-RB | 1221 | CG4882-PB | 1..1218 | 17..1234 | 6090 | 100 | Plus |
| CG4882-RA | 1221 | CG4882-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-RB | 1626 | CG4882-RB | 313..1530 | 17..1234 | 6090 | 100 | Plus |
| CG4882-RA | 1397 | CG4882-RA | 84..1301 | 17..1234 | 6090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23880913..23881588 | 1234..559 | 3380 | 100 | Minus |
| 2R | 25286936 | 2R | 23881720..23882063 | 560..217 | 1720 | 100 | Minus |
| 2R | 25286936 | 2R | 23882114..23882317 | 220..17 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:06:40 has no hits.
BO06038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:37 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 1..1221 | 17..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:08 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 106..1332 | 9..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:34 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 84..1301 | 17..1236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:37 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 106..1332 | 9..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:26 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4882-RA | 84..1301 | 17..1236 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:26 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23881721..23882060 | 220..559 | 100 | <- | Minus |
| 2R | 23882115..23882317 | 17..219 | 100 | | Minus |
| 2R | 23880911..23881587 | 560..1236 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:34 Download gff for
BO06038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19768434..19769110 | 560..1236 | 99 | <- | Minus |
| arm_2R | 19769244..19769583 | 220..559 | 100 | <- | Minus |
| arm_2R | 19769638..19769840 | 17..219 | 100 | | Minus |
BO06038.pep Sequence
Translation from 16 to 1252
> BO06038.pep
MLRSRISCALPPRRLVSYFSAEFNKVAHEGPAKFAAGSSHAVTSVDLDVF
VNPDNRPMDLVDRLLKLRKQKEASLVPLIPSVLVKQLLDSTNPQETISVL
RNPIQYGLFVDQFSGCFLLDFLLHNGHAVESAQLATILVDRNLCNNELLE
SLALQSFWSFAKEFKPFESSQVQPPAKNVEVEKVRVKFIRNYPDDASENT
EEKKLGRAMVRLGSGEGSLKELKQNVALLGYVLTGQVPEASSFLASNSAA
LHKETLLAAQSIVESLKLEGSEELLKSLQEAVEKSSKSNAIQSLLENSVK
ANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQSVEERKATIQKTLS
ELEAKRQNLWFFENRDDIDIQIYKKKVYYPKRWFGKKKKPKAADTFYVPP
TITHNGASFLDH
BO06038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4882-PB | 406 | CG4882-PB | 1..406 | 1..406 | 2048 | 100 | Plus |
| CG4882-PA | 406 | CG4882-PA | 1..406 | 1..406 | 2048 | 100 | Plus |
