Clone BO06039 Report

Search the DGRC for BO06039

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptfbl-RB
Protein status:BO06039.pep: validated full length
Sequenced Size:1285

Clone Sequence Records

BO06039.3prime Sequence

886 bp (723 high quality bases) assembled on 2005-12-02

> BO06039.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATCGGCGAAGAGGATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTAG
CCAGCTTCATGTTGACTTGGTCGCGGAAATCCTGCT

BO06039.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PD 1206 fbl-RD 374..1203 848..19 4125 99.8 Minus
CG5725-PB 1254 fbl-RB 422..1251 848..19 4125 99.8 Minus
CG5725-PA 1260 fbl-RA 428..1257 848..19 4125 99.8 Minus
CG5725-PC 1206 fbl-RC 374..1203 848..19 4125 99.8 Minus
CG5725-PE 1539 fbl-RE 707..1536 848..19 4125 99.8 Minus
CG5725-PD 1206 fbl-RD 335..374 886..847 200 100 Minus
CG5725-PB 1254 fbl-RB 383..422 886..847 200 100 Minus
CG5725-PA 1260 fbl-RA 389..428 886..847 200 100 Minus
CG5725-PC 1206 fbl-RC 335..374 886..847 200 100 Minus
CG5725-PE 1539 fbl-RE 668..707 886..847 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 750..1618 886..19 4305 99.8 Minus
fbl-RF 1370 CG5725-RF 227..1095 886..19 4305 99.8 Minus
fbl-RE 2386 CG5725-RE 784..1652 886..19 4305 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390885..20391179 313..19 1475 100 Minus
3L 28110227 3L 20390456..20390634 627..449 895 100 Minus
3L 28110227 3L 20390688..20390827 450..311 700 100 Minus
3L 28110227 3L 20390268..20390393 751..626 630 100 Minus
3L 28110227 3L 20390073..20390208 886..752 615 98.5 Minus
Blast to na_te.dros performed on 2015-02-13 12:00:47 has no hits.

BO06039.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:08 Download gff for BO06039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PA 389..1260 18..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:19 Download gff for BO06039.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PB 383..1254 18..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:06 Download gff for BO06039.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 784..1652 19..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:42 Download gff for BO06039.3prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 784..1652 19..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:42 Download gff for BO06039.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20390886..20391179 19..312 100   Minus
3L 20390073..20390208 752..886 98 -> Minus
3L 20390268..20390393 626..751 100 -> Minus
3L 20390458..20390634 449..625 100 -> Minus
3L 20390690..20390825 313..448 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:06 Download gff for BO06039.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383173..20383308 752..886 98 -> Minus
arm_3L 20383368..20383493 626..751 100 -> Minus
arm_3L 20383558..20383734 449..625 100 -> Minus
arm_3L 20383790..20383925 313..448 100 -> Minus
arm_3L 20383986..20384279 19..312 100   Minus

BO06039.5prime Sequence

866 bp (792 high quality bases) assembled on 2005-12-02

> BO06039.5prime
GAAGTTATCAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATC
AGTTGGCGAGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTC
ACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGA
TCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACT
CGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAAT
GTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGAC
CACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCG
AGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAG
CAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCT
GGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGG
AGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAG
CAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATC
CGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTT
CGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTC
ACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGA
CAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACA
CCGCTTTGGTCTCCCCGGCGATTGGTGGCGTCAAGCTTTGGCCAGATGCA
TCTCAACGACAAACGG

BO06039.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5725-PB 1254 fbl-RB 1..784 17..800 3920 100 Plus
CG5725-PA 1260 fbl-RA 52..790 62..800 3695 100 Plus
CG5725-PE 1539 fbl-RE 332..1069 63..800 3690 100 Plus
CG5725-PD 1206 fbl-RD 1..736 65..800 3680 100 Plus
CG5725-PC 1206 fbl-RC 1..736 65..800 3680 100 Plus
CG5725-PB 1254 fbl-RB 808..852 822..866 225 100 Plus
CG5725-PA 1260 fbl-RA 814..858 822..866 225 100 Plus
CG5725-PE 1539 fbl-RE 1093..1137 822..866 225 100 Plus
CG5725-PD 1206 fbl-RD 760..804 822..866 225 100 Plus
CG5725-PC 1206 fbl-RC 760..804 822..866 225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RB 1910 CG5725-RB 384..1236 16..866 4215 99.8 Plus
fbl-RC 2093 CG5725-RC 153..960 61..866 3990 99.8 Plus
fbl-RA 1866 CG5725-RA 382..1192 58..866 3990 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 239..534 1480 100 Plus
3L 28110227 3L 20388668..20388847 62..241 900 100 Plus
3L 28110227 3L 20390456..20390634 659..835 795 98.9 Plus
3L 28110227 3L 20390268..20390393 535..660 630 100 Plus
3L 28110227 3L 20384812..20384858 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:52:16 has no hits.

BO06039.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:09 Download gff for BO06039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PB 1..852 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:20 Download gff for BO06039.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5725-PB 1..852 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:52 Download gff for BO06039.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 380..1236 12..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:00 Download gff for BO06039.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 380..1236 12..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:00 Download gff for BO06039.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20384808..20384858 12..62 96 -> Plus
3L 20388669..20388847 63..241 100 -> Plus
3L 20389916..20390208 242..534 100 -> Plus
3L 20390268..20390393 535..660 100 -> Plus
3L 20390458..20390634 661..835 98 -> Plus
3L 20390690..20390720 836..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:52 Download gff for BO06039.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20381769..20381947 63..241 100 -> Plus
arm_3L 20377908..20377958 12..62 96 -> Plus
arm_3L 20383016..20383308 242..534 100 -> Plus
arm_3L 20383368..20383493 535..660 100 -> Plus
arm_3L 20383558..20383734 661..835 98 -> Plus
arm_3L 20383790..20383820 836..866 100   Plus

BO06039.complete Sequence

1285 bp (1285 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630245

> BO06039.complete
GAAGTTATCAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATC
AGTTGGCGAGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTC
ACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGA
TCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACT
CGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAAT
GTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGAC
CACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCG
AGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAG
CAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCT
GGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGG
AGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAG
CAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATC
CGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTT
CGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTC
ACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGA
CAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACA
ACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATG
CATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAACGC
CACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTGCG
CGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGCGA
GTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGGTC
CAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGGGG
CTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTAAC
GACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAAGC
AGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCACAA
GCAAACACTCCACTAGAGCAAGCTTTCTAGACCAT

BO06039.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RB 1254 CG5725-PB 1..1251 17..1267 6255 100 Plus
fbl-RA 1260 CG5725-PA 48..1257 58..1267 6035 99.9 Plus
fbl-RG 1287 CG5725-PG 79..1284 62..1267 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RB 1910 CG5725-RB 384..1635 16..1267 6260 100 Plus
fbl-RC 2093 CG5725-RC 153..1359 61..1267 6035 100 Plus
fbl-RA 1866 CG5725-RA 382..1591 58..1267 6035 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20389913..20390208 239..534 1480 100 Plus
3L 28110227 3L 20390885..20391179 973..1267 1475 100 Plus
3L 28110227 3L 20388668..20388847 62..241 900 100 Plus
3L 28110227 3L 20390456..20390634 659..837 895 100 Plus
3L 28110227 3L 20390688..20390827 836..975 700 100 Plus
3L 28110227 3L 20390268..20390393 535..660 630 100 Plus
3L 28110227 3L 20384812..20384858 16..62 235 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:37:06 has no hits.

BO06039.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:38 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 1..1254 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:10 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 378..1633 12..1267 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:27 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 385..1635 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:38 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 378..1633 12..1267 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:01 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
fbl-RB 385..1635 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:01 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20389916..20390208 242..534 100 -> Plus
3L 20390268..20390393 535..660 100 -> Plus
3L 20390886..20391179 974..1269 99   Plus
3L 20390690..20390825 838..973 100 -> Plus
3L 20390458..20390634 661..837 100 -> Plus
3L 20384813..20384858 17..62 100 -> Plus
3L 20388669..20388847 63..241 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:27 Download gff for BO06039.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383986..20384279 974..1269 99   Plus
arm_3L 20377913..20377958 17..62 100 -> Plus
arm_3L 20381769..20381947 63..241 100 -> Plus
arm_3L 20383016..20383308 242..534 100 -> Plus
arm_3L 20383368..20383493 535..660 100 -> Plus
arm_3L 20383558..20383734 661..837 100 -> Plus
arm_3L 20383790..20383925 838..973 100 -> Plus

BO06039.pep Sequence

Translation from 16 to 1285

> BO06039.pep
MTEDEQINLRNQLARAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGI
LRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGN
FLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIK
GILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVSIL
AVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVD
KLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLVTI
TNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMK
GLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQTSS
TADEPPEKAPTSKHSTRASFLDH

BO06039.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-PB 417 CG5725-PB 1..417 1..417 2171 100 Plus
fbl-PA 419 CG5725-PA 18..419 16..417 2097 100 Plus
fbl-PG 428 CG5725-PG 27..428 16..417 2097 100 Plus
fbl-PC 401 CG5725-PC 1..401 17..417 2093 100 Plus
fbl-PD 401 CG5725-PD 1..401 17..417 2093 100 Plus