Clone Sequence Records
BO06039.3prime Sequence
886 bp (723 high quality bases) assembled on 2005-12-02
> BO06039.3prime
ATGGTCTAGAAAGCTTGCTCTAGTGGAGTGTTTGCTTGTGGGCGCCTTTT
CTGGTGGCTCGTCCGCCGTAGAAGATGTCTGTGCTGCTTCGCTTGCTGAA
TCGGATTCAGTGTGGATTGAATGCTCCACTCCGTCGTTAAGGGCGGCTGC
CAGCTCGCCGTTGAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCT
CGTGCTCCAGGAAAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATT
GCGTACGCCAGCAGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCC
CACAAAGACGACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTA
TGGAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCT
TCGCGTGATACGGAAACCCGTTTGTCGTTGAGATGCATCTGGCCAAAGCT
TGACGCCACCAAATCGCCGGGGAGACCAAAGCGGTTGTAATCGCCACCAT
AAATGTCCTTAACTAACTTGTCCACCTTCCTATTGTCACCCTTGGTGGCC
AGTTGGATGGCCTCTTCGAAGGATGTGCAGCCGGTGAGTAGACAACACAG
GCCGAGGAATGTACCGCCGCCCAAGCTCGTGCCCGAAATCCGCTTGTAGT
TGTCGGGACCGTAGACCGCCAGGATGGAGACTCCGGATCCGACGTTCACC
AGAATAAACGGAAACGGTTGAGAGAAATTGAACTGCTGCTTTTCGCTTTT
TAGAATGTCACGTGCGTTTTCGTAGTAGTAGCACTCCGTGCGATTATGCA
GATCGGCGAAGAGGATGCCTTTGATGAGCGTGTCCAGCTCGTCGAATTAG
CCAGCTTCATGTTGACTTGGTCGCGGAAATCCTGCT
BO06039.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PD | 1206 | fbl-RD | 374..1203 | 848..19 | 4125 | 99.8 | Minus |
CG5725-PB | 1254 | fbl-RB | 422..1251 | 848..19 | 4125 | 99.8 | Minus |
CG5725-PA | 1260 | fbl-RA | 428..1257 | 848..19 | 4125 | 99.8 | Minus |
CG5725-PC | 1206 | fbl-RC | 374..1203 | 848..19 | 4125 | 99.8 | Minus |
CG5725-PE | 1539 | fbl-RE | 707..1536 | 848..19 | 4125 | 99.8 | Minus |
CG5725-PD | 1206 | fbl-RD | 335..374 | 886..847 | 200 | 100 | Minus |
CG5725-PB | 1254 | fbl-RB | 383..422 | 886..847 | 200 | 100 | Minus |
CG5725-PA | 1260 | fbl-RA | 389..428 | 886..847 | 200 | 100 | Minus |
CG5725-PC | 1206 | fbl-RC | 335..374 | 886..847 | 200 | 100 | Minus |
CG5725-PE | 1539 | fbl-RE | 668..707 | 886..847 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 750..1618 | 886..19 | 4305 | 99.8 | Minus |
fbl-RF | 1370 | CG5725-RF | 227..1095 | 886..19 | 4305 | 99.8 | Minus |
fbl-RE | 2386 | CG5725-RE | 784..1652 | 886..19 | 4305 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390885..20391179 | 313..19 | 1475 | 100 | Minus |
3L | 28110227 | 3L | 20390456..20390634 | 627..449 | 895 | 100 | Minus |
3L | 28110227 | 3L | 20390688..20390827 | 450..311 | 700 | 100 | Minus |
3L | 28110227 | 3L | 20390268..20390393 | 751..626 | 630 | 100 | Minus |
3L | 28110227 | 3L | 20390073..20390208 | 886..752 | 615 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:00:47 has no hits.
BO06039.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:08 Download gff for
BO06039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PA | 389..1260 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:19 Download gff for
BO06039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PB | 383..1254 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:06 Download gff for
BO06039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 784..1652 | 19..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:42 Download gff for
BO06039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 784..1652 | 19..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:42 Download gff for
BO06039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390886..20391179 | 19..312 | 100 | | Minus |
3L | 20390073..20390208 | 752..886 | 98 | -> | Minus |
3L | 20390268..20390393 | 626..751 | 100 | -> | Minus |
3L | 20390458..20390634 | 449..625 | 100 | -> | Minus |
3L | 20390690..20390825 | 313..448 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:06 Download gff for
BO06039.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383173..20383308 | 752..886 | 98 | -> | Minus |
arm_3L | 20383368..20383493 | 626..751 | 100 | -> | Minus |
arm_3L | 20383558..20383734 | 449..625 | 100 | -> | Minus |
arm_3L | 20383790..20383925 | 313..448 | 100 | -> | Minus |
arm_3L | 20383986..20384279 | 19..312 | 100 | | Minus |
BO06039.5prime Sequence
866 bp (792 high quality bases) assembled on 2005-12-02
> BO06039.5prime
GAAGTTATCAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATC
AGTTGGCGAGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTC
ACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGA
TCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACT
CGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAAT
GTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGAC
CACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCG
AGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAG
CAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCT
GGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGG
AGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAG
CAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATC
CGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTT
CGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTC
ACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGA
CAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACA
CCGCTTTGGTCTCCCCGGCGATTGGTGGCGTCAAGCTTTGGCCAGATGCA
TCTCAACGACAAACGG
BO06039.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5725-PB | 1254 | fbl-RB | 1..784 | 17..800 | 3920 | 100 | Plus |
CG5725-PA | 1260 | fbl-RA | 52..790 | 62..800 | 3695 | 100 | Plus |
CG5725-PE | 1539 | fbl-RE | 332..1069 | 63..800 | 3690 | 100 | Plus |
CG5725-PD | 1206 | fbl-RD | 1..736 | 65..800 | 3680 | 100 | Plus |
CG5725-PC | 1206 | fbl-RC | 1..736 | 65..800 | 3680 | 100 | Plus |
CG5725-PB | 1254 | fbl-RB | 808..852 | 822..866 | 225 | 100 | Plus |
CG5725-PA | 1260 | fbl-RA | 814..858 | 822..866 | 225 | 100 | Plus |
CG5725-PE | 1539 | fbl-RE | 1093..1137 | 822..866 | 225 | 100 | Plus |
CG5725-PD | 1206 | fbl-RD | 760..804 | 822..866 | 225 | 100 | Plus |
CG5725-PC | 1206 | fbl-RC | 760..804 | 822..866 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RB | 1910 | CG5725-RB | 384..1236 | 16..866 | 4215 | 99.8 | Plus |
fbl-RC | 2093 | CG5725-RC | 153..960 | 61..866 | 3990 | 99.8 | Plus |
fbl-RA | 1866 | CG5725-RA | 382..1192 | 58..866 | 3990 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 239..534 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 20388668..20388847 | 62..241 | 900 | 100 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 659..835 | 795 | 98.9 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 535..660 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20384812..20384858 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:52:16 has no hits.
BO06039.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:09 Download gff for
BO06039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PB | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:20 Download gff for
BO06039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5725-PB | 1..852 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:52 Download gff for
BO06039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 380..1236 | 12..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:00 Download gff for
BO06039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 380..1236 | 12..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:00 Download gff for
BO06039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20384808..20384858 | 12..62 | 96 | -> | Plus |
3L | 20388669..20388847 | 63..241 | 100 | -> | Plus |
3L | 20389916..20390208 | 242..534 | 100 | -> | Plus |
3L | 20390268..20390393 | 535..660 | 100 | -> | Plus |
3L | 20390458..20390634 | 661..835 | 98 | -> | Plus |
3L | 20390690..20390720 | 836..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:52 Download gff for
BO06039.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20381769..20381947 | 63..241 | 100 | -> | Plus |
arm_3L | 20377908..20377958 | 12..62 | 96 | -> | Plus |
arm_3L | 20383016..20383308 | 242..534 | 100 | -> | Plus |
arm_3L | 20383368..20383493 | 535..660 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 661..835 | 98 | -> | Plus |
arm_3L | 20383790..20383820 | 836..866 | 100 | | Plus |
BO06039.complete Sequence
1285 bp (1285 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630245
> BO06039.complete
GAAGTTATCAGTCGACATGACGGAGGACGAACAGATTAACCTGCGCAATC
AGTTGGCGAGGGCGATGCCATGGTTTGGCATGGACATCGGCGGAACCCTC
ACCAAGCTGGTCTACTTCGAGCCCAAGGACATAACGCCGGATGAGCAGGA
TCGCGAGGCTGGCATTTTGCGGAATATCCGACGCTACTTGACCAAAAACT
CGGCGTACGGCAAAACCGGACATCGTGATACGCACCTACAGATGGACAAT
GTCGAGATACGCAAAAGACGCGGCTCCTTGCATTTCATTCGCTTCCAGAC
CACGGACATGGGCAACTTCCTATCGCTTGCCAAGCAGAAGGGCATGGCCG
AGCTGGTGACCACGGTTTGTGCCACCGGCGGTGGCGCATTCAAGTTCGAG
CAGGATTTCCGCGACCAAGTCAACATGAAGCTGGCTAAATTCGACGAGCT
GGACACGCTCATCAAAGGCATTCTCTTCGCCGATCTGCATAATCGCACGG
AGTGCTACTACTACGAAAACGCACGTGACATTCTAAAAAGCGAAAAGCAG
CAGTTCAATTTCTCTCAACCGTTTCCGTTTATTCTGGTGAACGTCGGATC
CGGAGTCTCCATCCTGGCGGTCTACGGTCCCGACAACTACAAGCGGATTT
CGGGCACGAGCTTGGGCGGCGGTACATTCCTCGGCCTGTGTTGTCTACTC
ACCGGCTGCACATCCTTCGAAGAGGCCATCCAACTGGCCACCAAGGGTGA
CAATAGGAAGGTGGACAAGTTAGTTAAGGACATTTATGGTGGCGATTACA
ACCGCTTTGGTCTCCCCGGCGATTTGGTGGCGTCAAGCTTTGGCCAGATG
CATCTCAACGACAAACGGGTTTCCGTATCACGCGAAGATCTGGCCAACGC
CACTCTGGTCACCATAACGAATAATATCGGCTCCATAGCAAGGATGTGCG
CGCTGAATGAGAAGATCGATAGGGTCGTCTTTGTGGGCAACTTTCTGCGA
GTTAACCCCATTTCCATGAAGCTGCTGGCGTACGCAATGGAGTTCTGGTC
CAATGGCACAATGAAGGGTCTTTTCCTGGAGCACGAGGGATACTTTGGGG
CTCTGGGTTGCCTGCTGCAGTTCAACGGCGAGCTGGCAGCCGCCCTTAAC
GACGGAGTGGAGCATTCAATCCACACTGAATCCGATTCAGCAAGCGAAGC
AGCACAGACATCTTCTACGGCGGACGAGCCACCAGAAAAGGCGCCCACAA
GCAAACACTCCACTAGAGCAAGCTTTCTAGACCAT
BO06039.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RB | 1254 | CG5725-PB | 1..1251 | 17..1267 | 6255 | 100 | Plus |
fbl-RA | 1260 | CG5725-PA | 48..1257 | 58..1267 | 6035 | 99.9 | Plus |
fbl-RG | 1287 | CG5725-PG | 79..1284 | 62..1267 | 6030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RB | 1910 | CG5725-RB | 384..1635 | 16..1267 | 6260 | 100 | Plus |
fbl-RC | 2093 | CG5725-RC | 153..1359 | 61..1267 | 6035 | 100 | Plus |
fbl-RA | 1866 | CG5725-RA | 382..1591 | 58..1267 | 6035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20389913..20390208 | 239..534 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 20390885..20391179 | 973..1267 | 1475 | 100 | Plus |
3L | 28110227 | 3L | 20388668..20388847 | 62..241 | 900 | 100 | Plus |
3L | 28110227 | 3L | 20390456..20390634 | 659..837 | 895 | 100 | Plus |
3L | 28110227 | 3L | 20390688..20390827 | 836..975 | 700 | 100 | Plus |
3L | 28110227 | 3L | 20390268..20390393 | 535..660 | 630 | 100 | Plus |
3L | 28110227 | 3L | 20384812..20384858 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:37:06 has no hits.
BO06039.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:38 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 1..1254 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:10 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 378..1633 | 12..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:27 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 385..1635 | 17..1269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:38 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 378..1633 | 12..1267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:01 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RB | 385..1635 | 17..1269 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:01 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20389916..20390208 | 242..534 | 100 | -> | Plus |
3L | 20390268..20390393 | 535..660 | 100 | -> | Plus |
3L | 20390886..20391179 | 974..1269 | 99 | | Plus |
3L | 20390690..20390825 | 838..973 | 100 | -> | Plus |
3L | 20390458..20390634 | 661..837 | 100 | -> | Plus |
3L | 20384813..20384858 | 17..62 | 100 | -> | Plus |
3L | 20388669..20388847 | 63..241 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:27 Download gff for
BO06039.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383986..20384279 | 974..1269 | 99 | | Plus |
arm_3L | 20377913..20377958 | 17..62 | 100 | -> | Plus |
arm_3L | 20381769..20381947 | 63..241 | 100 | -> | Plus |
arm_3L | 20383016..20383308 | 242..534 | 100 | -> | Plus |
arm_3L | 20383368..20383493 | 535..660 | 100 | -> | Plus |
arm_3L | 20383558..20383734 | 661..837 | 100 | -> | Plus |
arm_3L | 20383790..20383925 | 838..973 | 100 | -> | Plus |
BO06039.pep Sequence
Translation from 16 to 1285
> BO06039.pep
MTEDEQINLRNQLARAMPWFGMDIGGTLTKLVYFEPKDITPDEQDREAGI
LRNIRRYLTKNSAYGKTGHRDTHLQMDNVEIRKRRGSLHFIRFQTTDMGN
FLSLAKQKGMAELVTTVCATGGGAFKFEQDFRDQVNMKLAKFDELDTLIK
GILFADLHNRTECYYYENARDILKSEKQQFNFSQPFPFILVNVGSGVSIL
AVYGPDNYKRISGTSLGGGTFLGLCCLLTGCTSFEEAIQLATKGDNRKVD
KLVKDIYGGDYNRFGLPGDLVASSFGQMHLNDKRVSVSREDLANATLVTI
TNNIGSIARMCALNEKIDRVVFVGNFLRVNPISMKLLAYAMEFWSNGTMK
GLFLEHEGYFGALGCLLQFNGELAAALNDGVEHSIHTESDSASEAAQTSS
TADEPPEKAPTSKHSTRASFLDH
BO06039.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-PB | 417 | CG5725-PB | 1..417 | 1..417 | 2171 | 100 | Plus |
fbl-PA | 419 | CG5725-PA | 18..419 | 16..417 | 2097 | 100 | Plus |
fbl-PG | 428 | CG5725-PG | 27..428 | 16..417 | 2097 | 100 | Plus |
fbl-PC | 401 | CG5725-PC | 1..401 | 17..417 | 2093 | 100 | Plus |
fbl-PD | 401 | CG5725-PD | 1..401 | 17..417 | 2093 | 100 | Plus |