Clone Sequence Records
BO06040.3prime Sequence
368 bp (367 high quality bases) assembled on 2005-12-02
> BO06040.3prime
ATGGTCTAGAAAGCTTGCCTCGCTCTCATCATCGTCGTCCTCGTCGGACT
CCTCCTTCTTGCTCTTCTTCGCCACCTTTTTCGCTGGTTTCGCGCGCTTC
TTGGCTCCACCACCGTTGGCAGCACTGCTGCCACCATTGGCCTCGAACTC
CTTGACCGCCCGATCGTAGTCGTCCTTGGCCTTAGCAGCCTTGGCCTCCC
ACTCAGACTTGTCCTTCATTGCCCTCCATAATTCACCACCGCGCTTGGCC
ACCTCGGTGACCTTGATGCCGGGATTCTCGCGCTTGATCGACTCGCGGGC
ACTGTTGAGCCACAGCATGTAGGCGGAGAGTGGGCGTTTTGGCTTATCAG
ACATGTCGACTGATAACT
BO06040.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17950-PA | 339 | HmgD-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
CG17950-PB | 339 | HmgD-RB | 1..336 | 354..19 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1005 | 354..19 | 1680 | 100 | Minus |
HmgD-RC | 967 | CG17950-RC | 142..477 | 354..19 | 1680 | 100 | Minus |
HmgD-RB | 1279 | CG17950-RB | 94..429 | 354..19 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715877 | 204..19 | 930 | 100 | Minus |
2R | 25286936 | 2R | 21715468..21715618 | 354..204 | 755 | 100 | Minus |
2R | 25286936 | 2R | 21698391..21698510 | 208..327 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:44:28 has no hits.
BO06040.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:10 Download gff for
BO06040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-PB | 1..339 | 18..354 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:21 Download gff for
BO06040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17950-PB | 1..339 | 18..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:06 Download gff for
BO06040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 86..430 | 19..362 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:21 Download gff for
BO06040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 85..429 | 19..362 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:21 Download gff for
BO06040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715459..21715617 | 205..362 | 97 | -> | Minus |
2R | 21715692..21715877 | 19..204 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:06 Download gff for
BO06040.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602964..17603122 | 205..362 | 97 | -> | Minus |
arm_2R | 17603197..17603382 | 19..204 | 100 | | Minus |
BO06040.5prime Sequence
368 bp (367 high quality bases) assembled on 2005-12-02
> BO06040.5prime
GAAGTTATCAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGGCAAGCTTTCTAGACC
BO06040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17950-PA | 339 | HmgD-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
CG17950-PB | 339 | HmgD-RB | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1005 | 17..352 | 1680 | 100 | Plus |
HmgD-RC | 967 | CG17950-RC | 142..477 | 17..352 | 1680 | 100 | Plus |
HmgD-RB | 1279 | CG17950-RB | 94..429 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715877 | 167..352 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21715468..21715618 | 17..167 | 755 | 100 | Plus |
2R | 25286936 | 2R | 21698391..21698510 | 163..44 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:51:32 has no hits.
BO06040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:10 Download gff for
BO06040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-PB | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:22 Download gff for
BO06040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17950-PB | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:32 Download gff for
BO06040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 86..430 | 9..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:01:47 Download gff for
BO06040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 85..429 | 9..352 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:01:47 Download gff for
BO06040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715459..21715617 | 9..166 | 97 | -> | Plus |
2R | 21715692..21715877 | 167..352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:32 Download gff for
BO06040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602964..17603122 | 9..166 | 97 | -> | Plus |
arm_2R | 17603197..17603382 | 167..352 | 100 | | Plus |
BO06040.complete Sequence
370 bp (370 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630246
> BO06040.complete
GAAGTTATCAGTCGACATGTCTGATAAGCCAAAACGCCCACTCTCCGCCT
ACATGCTGTGGCTCAACAGTGCCCGCGAGTCGATCAAGCGCGAGAATCCC
GGCATCAAGGTCACCGAGGTGGCCAAGCGCGGTGGTGAATTATGGAGGGC
AATGAAGGACAAGTCTGAGTGGGAGGCCAAGGCTGCTAAGGCCAAGGACG
ACTACGATCGGGCGGTCAAGGAGTTCGAGGCCAATGGTGGCAGCAGTGCT
GCCAACGGTGGTGGAGCCAAGAAGCGCGCGAAACCAGCGAAAAAGGTGGC
GAAGAAGAGCAAGAAGGAGGAGTCCGACGAGGACGACGATGATGAGAGCG
AGGCAAGCTTTCTAGACCAT
BO06040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 339 | CG17950-PD | 1..336 | 17..352 | 1680 | 100 | Plus |
HmgD-RC | 339 | CG17950-PC | 1..336 | 17..352 | 1680 | 100 | Plus |
HmgD-RB | 339 | CG17950-PB | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-RD | 1495 | CG17950-RD | 670..1005 | 17..352 | 1680 | 100 | Plus |
HmgD-RC | 967 | CG17950-RC | 142..477 | 17..352 | 1680 | 100 | Plus |
HmgD-RB | 1279 | CG17950-RB | 94..429 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21715692..21715877 | 167..352 | 930 | 100 | Plus |
2R | 25286936 | 2R | 21715468..21715618 | 17..167 | 755 | 100 | Plus |
2R | 25286936 | 2R | 21698391..21698510 | 163..44 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:05:11 has no hits.
BO06040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:28 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 1..339 | 17..353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:59 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 318..662 | 9..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:26 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RA | 95..430 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:28 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 318..662 | 9..352 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:02 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HmgD-RB | 94..429 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:02 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21715468..21715617 | 17..166 | 100 | -> | Plus |
2R | 21715692..21715877 | 167..354 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:26 Download gff for
BO06040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17602973..17603122 | 17..166 | 100 | -> | Plus |
arm_2R | 17603197..17603382 | 167..354 | 98 | | Plus |
BO06040.pep Sequence
Translation from 16 to 370
> BO06040.pep
MSDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKS
EWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKK
EESDEDDDDESEASFLDH
BO06040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HmgD-PD | 112 | CG17950-PD | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PC | 112 | CG17950-PC | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PB | 112 | CG17950-PB | 1..112 | 1..112 | 577 | 100 | Plus |
HmgD-PA | 112 | CG17950-PA | 1..112 | 1..112 | 577 | 100 | Plus |
HmgZ-PD | 111 | CG17921-PD | 4..111 | 3..112 | 382 | 64.9 | Plus |