Clone BO06041 Report

Search the DGRC for BO06041

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta7-RA
Protein status:BO06041.pep: validated full length
Sequenced Size:838

Clone Sequence Records

BO06041.3prime Sequence

835 bp (787 high quality bases) assembled on 2005-12-02

> BO06041.3prime
ATGGTCTAGAAAGCTTGCGTATCCCTTTATGGTTTCGGCGAATGTCCAGT
TTTCGTTAACTTGGAAGGGCCCCTCCACGCCGCATCCGTTGACGCTGCAC
ACGCCCACAGTGTATTGGGAAATATTACGAGTATCGCGGTAGTAAAGCAC
CTCCATGCATGTGCGGATCAGTTCGGAAGCTTCTACGGCGGTAAAGTCCC
TGTCCTTGGGCTTCTTCTCACGGACCAGCGGAACGGCCAAATGGCGGGCA
AAACCAGTGGCCACCACGTAGTCCTCGTAGGATCGTCCACGGAGATCCAC
GTTGGCCAGGTACGGAGTCCCCTCGTTGTCCACGCCGCCGACAACCACGT
CAATGTAGAGGGGGTTCATCCGCGAACGACGGTTGTAGAGCACACGGGTC
ATCCAACTGGCCAAGGACTTGGGCTTCATCTCGATGTTGTCGTCGCAGCA
CTGGTCCTCGATCATCTTCTGGTCGATGTTGCGCTTGATGGACTGGATGT
CAGCGAAGTCGCCGCTCCCGCCGAGCAGGATGTTCTTGTTGACCTTAAAG
ACGCGCTCAATGTTTTGGTAGCGGGCCATGGATCCGTAAGACACCAGGGT
GTCGGCGGCCAGCATCACTCCTGAATCATAGCGAATGCCAAGCACGGAAG
TGCCCGTGGTGCTGGAAGCAGTGCTGTGCTTGGTTCCATAGGGTCCCATT
GTGGTCAGCTCCCGCGGTAGCTGCTGGACCGGCGTCTGTCCGCCCGTGAA
GTTGTAGAACTCGCCGGGAGCGGGTCCGTTCTGCCACATGGGCTGCGCTA
GGCTGTTGTAGTTGTTCACATGTCGACTGATAACT

BO06041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG12000-PA 807 CG12000-RA 5..804 818..19 4000 100 Minus
CG12000-PB 807 CG12000-RB 5..804 818..19 4000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 105..904 818..19 4000 100 Minus
Prosbeta7-RA 1215 CG12000-RA 294..1093 818..19 4000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 169..674 2515 99.8 Plus
3R 32079331 3R 5357134..5357284 19..169 755 100 Plus
3R 32079331 3R 5357924..5358071 671..818 740 100 Plus
Blast to na_te.dros performed 2015-02-13 00:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 488..419 109 63.5 Minus

BO06041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:12 Download gff for BO06041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..807 18..821 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:24 Download gff for BO06041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..807 18..821 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:54 Download gff for BO06041.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1099 13..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:26 Download gff for BO06041.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1099 13..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:26 Download gff for BO06041.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5357128..5357283 13..168 98 <- Plus
3R 5357355..5357856 169..670 100 <- Plus
3R 5357924..5358076 671..822 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:54 Download gff for BO06041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182850..1183005 13..168 98 <- Plus
arm_3R 1183077..1183578 169..670 100 <- Plus
arm_3R 1183646..1183798 671..822 99   Plus

BO06041.5prime Sequence

818 bp (761 high quality bases) assembled on 2005-12-02

> BO06041.5prime
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCG
CCGAAACCATAAAGGGAT

BO06041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12000-PA 807 CG12000-RA 1..802 17..818 4010 100 Plus
CG12000-PB 807 CG12000-RB 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 100..902 16..818 4015 100 Plus
Prosbeta7-RA 1215 CG12000-RA 289..1091 16..818 4015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 670..165 2515 99.8 Minus
3R 32079331 3R 5357924..5358076 168..16 765 100 Minus
3R 32079331 3R 5357136..5357284 818..670 745 100 Minus
Blast to na_te.dros performed 2015-02-13 15:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 351..420 109 63.5 Plus

BO06041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:13 Download gff for BO06041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:26 Download gff for BO06041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12000-PB 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:09 Download gff for BO06041.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1091 16..818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:14:07 Download gff for BO06041.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 289..1091 16..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:14:07 Download gff for BO06041.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5357136..5357283 671..818 100 <- Minus
3R 5357355..5357856 169..670 100 <- Minus
3R 5357924..5358076 16..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:09 Download gff for BO06041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182858..1183005 671..818 100 <- Minus
arm_3R 1183077..1183578 169..670 100 <- Minus
arm_3R 1183646..1183798 16..168 100   Minus

BO06041.complete Sequence

838 bp (838 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630247

> BO06041.complete
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCG
CCGAAACCATAAAGGGATACGCAAGCTTTCTAGACCAT

BO06041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 807 CG12000-PB 1..804 17..820 4020 100 Plus
Prosbeta7-RA 807 CG12000-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-RB 1026 CG12000-RB 100..904 16..820 4025 100 Plus
Prosbeta7-RA 1215 CG12000-RA 289..1093 16..820 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5357355..5357860 670..165 2515 99.8 Minus
3R 32079331 3R 5357924..5358076 168..16 765 100 Minus
3R 32079331 3R 5357134..5357284 820..670 755 100 Minus
Blast to na_te.dros performed 2014-11-27 14:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4427..4500 351..420 109 63.5 Plus

BO06041.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:39 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RB 1..807 17..821 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:12 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RB 98..908 16..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:13 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 295..1093 22..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:39 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta4-RB 98..908 16..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:08 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta7-RA 295..1093 22..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:08 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5357132..5357283 671..822 98 <- Minus
3R 5357355..5357856 169..670 100 <- Minus
3R 5357924..5358070 22..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:13 Download gff for BO06041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1182854..1183005 671..822 98 <- Minus
arm_3R 1183077..1183578 169..670 100 <- Minus
arm_3R 1183646..1183792 22..168 100   Minus

BO06041.pep Sequence

Translation from 16 to 838

> BO06041.pep
MLNNYNSLAQPMWQNGPAPGEFYNFTGGQTPVQQLPRELTTMGPYGTKHS
TASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILL
GGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRS
RMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLV
REKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVE
GPFQVNENWTFAETIKGYASFLDH

BO06041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta7-PB 268 CG12000-PB 1..268 1..268 1417 100 Plus
Prosbeta7-PA 268 CG12000-PA 1..268 1..268 1417 100 Plus