Clone Sequence Records
BO06041.3prime Sequence
835 bp (787 high quality bases) assembled on 2005-12-02
> BO06041.3prime
ATGGTCTAGAAAGCTTGCGTATCCCTTTATGGTTTCGGCGAATGTCCAGT
TTTCGTTAACTTGGAAGGGCCCCTCCACGCCGCATCCGTTGACGCTGCAC
ACGCCCACAGTGTATTGGGAAATATTACGAGTATCGCGGTAGTAAAGCAC
CTCCATGCATGTGCGGATCAGTTCGGAAGCTTCTACGGCGGTAAAGTCCC
TGTCCTTGGGCTTCTTCTCACGGACCAGCGGAACGGCCAAATGGCGGGCA
AAACCAGTGGCCACCACGTAGTCCTCGTAGGATCGTCCACGGAGATCCAC
GTTGGCCAGGTACGGAGTCCCCTCGTTGTCCACGCCGCCGACAACCACGT
CAATGTAGAGGGGGTTCATCCGCGAACGACGGTTGTAGAGCACACGGGTC
ATCCAACTGGCCAAGGACTTGGGCTTCATCTCGATGTTGTCGTCGCAGCA
CTGGTCCTCGATCATCTTCTGGTCGATGTTGCGCTTGATGGACTGGATGT
CAGCGAAGTCGCCGCTCCCGCCGAGCAGGATGTTCTTGTTGACCTTAAAG
ACGCGCTCAATGTTTTGGTAGCGGGCCATGGATCCGTAAGACACCAGGGT
GTCGGCGGCCAGCATCACTCCTGAATCATAGCGAATGCCAAGCACGGAAG
TGCCCGTGGTGCTGGAAGCAGTGCTGTGCTTGGTTCCATAGGGTCCCATT
GTGGTCAGCTCCCGCGGTAGCTGCTGGACCGGCGTCTGTCCGCCCGTGAA
GTTGTAGAACTCGCCGGGAGCGGGTCCGTTCTGCCACATGGGCTGCGCTA
GGCTGTTGTAGTTGTTCACATGTCGACTGATAACT
BO06041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12000-PA | 807 | CG12000-RA | 5..804 | 818..19 | 4000 | 100 | Minus |
CG12000-PB | 807 | CG12000-RB | 5..804 | 818..19 | 4000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 1026 | CG12000-RB | 105..904 | 818..19 | 4000 | 100 | Minus |
Prosbeta7-RA | 1215 | CG12000-RA | 294..1093 | 818..19 | 4000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5357355..5357860 | 169..674 | 2515 | 99.8 | Plus |
3R | 32079331 | 3R | 5357134..5357284 | 19..169 | 755 | 100 | Plus |
3R | 32079331 | 3R | 5357924..5358071 | 671..818 | 740 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 00:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 488..419 | 109 | 63.5 | Minus |
BO06041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:12 Download gff for
BO06041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..807 | 18..821 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:24 Download gff for
BO06041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..807 | 18..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:54 Download gff for
BO06041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1099 | 13..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:26 Download gff for
BO06041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1099 | 13..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:26 Download gff for
BO06041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5357128..5357283 | 13..168 | 98 | <- | Plus |
3R | 5357355..5357856 | 169..670 | 100 | <- | Plus |
3R | 5357924..5358076 | 671..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:54 Download gff for
BO06041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1182850..1183005 | 13..168 | 98 | <- | Plus |
arm_3R | 1183077..1183578 | 169..670 | 100 | <- | Plus |
arm_3R | 1183646..1183798 | 671..822 | 99 | | Plus |
BO06041.5prime Sequence
818 bp (761 high quality bases) assembled on 2005-12-02
> BO06041.5prime
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCG
CCGAAACCATAAAGGGAT
BO06041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12000-PA | 807 | CG12000-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG12000-PB | 807 | CG12000-RB | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 1026 | CG12000-RB | 100..902 | 16..818 | 4015 | 100 | Plus |
Prosbeta7-RA | 1215 | CG12000-RA | 289..1091 | 16..818 | 4015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5357355..5357860 | 670..165 | 2515 | 99.8 | Minus |
3R | 32079331 | 3R | 5357924..5358076 | 168..16 | 765 | 100 | Minus |
3R | 32079331 | 3R | 5357136..5357284 | 818..670 | 745 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 15:49:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 351..420 | 109 | 63.5 | Plus |
BO06041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:13 Download gff for
BO06041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:26 Download gff for
BO06041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12000-PB | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:09 Download gff for
BO06041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1091 | 16..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:14:07 Download gff for
BO06041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 289..1091 | 16..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:14:07 Download gff for
BO06041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5357136..5357283 | 671..818 | 100 | <- | Minus |
3R | 5357355..5357856 | 169..670 | 100 | <- | Minus |
3R | 5357924..5358076 | 16..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:09 Download gff for
BO06041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1182858..1183005 | 671..818 | 100 | <- | Minus |
arm_3R | 1183077..1183578 | 169..670 | 100 | <- | Minus |
arm_3R | 1183646..1183798 | 16..168 | 100 | | Minus |
BO06041.complete Sequence
838 bp (838 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630247
> BO06041.complete
GAAGTTATCAGTCGACATGTTGAACAACTACAACAGCCTAGCGCAGCCCA
TGTGGCAGAACGGACCCGCTCCCGGCGAGTTCTACAACTTCACGGGCGGA
CAGACGCCGGTCCAGCAGCTACCGCGGGAGCTGACCACAATGGGACCCTA
TGGAACCAAGCACAGCACTGCTTCCAGCACCACGGGCACTTCCGTGCTTG
GCATTCGCTATGATTCAGGAGTGATGCTGGCCGCCGACACCCTGGTGTCT
TACGGATCCATGGCCCGCTACCAAAACATTGAGCGCGTCTTTAAGGTCAA
CAAGAACATCCTGCTCGGCGGGAGCGGCGACTTCGCTGACATCCAGTCCA
TCAAGCGCAACATCGACCAGAAGATGATCGAGGACCAGTGCTGCGACGAC
AACATCGAGATGAAGCCCAAGTCCTTGGCCAGTTGGATGACCCGTGTGCT
CTACAACCGTCGTTCGCGGATGAACCCCCTCTACATTGACGTGGTTGTCG
GCGGCGTGGACAACGAGGGGACTCCGTACCTGGCCAACGTGGATCTCCGT
GGACGATCCTACGAGGACTACGTGGTGGCCACTGGTTTTGCCCGCCATTT
GGCCGTTCCGCTGGTCCGTGAGAAGAAGCCCAAGGACAGGGACTTTACCG
CCGTAGAAGCTTCCGAACTGATCCGCACATGCATGGAGGTGCTTTACTAC
CGCGATACTCGTAATATTTCCCAATACACTGTGGGCGTGTGCAGCGTCAA
CGGATGCGGCGTGGAGGGGCCCTTCCAAGTTAACGAAAACTGGACATTCG
CCGAAACCATAAAGGGATACGCAAGCTTTCTAGACCAT
BO06041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 807 | CG12000-PB | 1..804 | 17..820 | 4020 | 100 | Plus |
Prosbeta7-RA | 807 | CG12000-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-RB | 1026 | CG12000-RB | 100..904 | 16..820 | 4025 | 100 | Plus |
Prosbeta7-RA | 1215 | CG12000-RA | 289..1093 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5357355..5357860 | 670..165 | 2515 | 99.8 | Minus |
3R | 32079331 | 3R | 5357924..5358076 | 168..16 | 765 | 100 | Minus |
3R | 32079331 | 3R | 5357134..5357284 | 820..670 | 755 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:15:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4427..4500 | 351..420 | 109 | 63.5 | Plus |
BO06041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:39 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RB | 1..807 | 17..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:12 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RB | 98..908 | 16..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:13 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 295..1093 | 22..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:39 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta4-RB | 98..908 | 16..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:08 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta7-RA | 295..1093 | 22..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:08 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5357132..5357283 | 671..822 | 98 | <- | Minus |
3R | 5357355..5357856 | 169..670 | 100 | <- | Minus |
3R | 5357924..5358070 | 22..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:13 Download gff for
BO06041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1182854..1183005 | 671..822 | 98 | <- | Minus |
arm_3R | 1183077..1183578 | 169..670 | 100 | <- | Minus |
arm_3R | 1183646..1183792 | 22..168 | 100 | | Minus |
BO06041.pep Sequence
Translation from 16 to 838
> BO06041.pep
MLNNYNSLAQPMWQNGPAPGEFYNFTGGQTPVQQLPRELTTMGPYGTKHS
TASSTTGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILL
GGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRS
RMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLV
REKKPKDRDFTAVEASELIRTCMEVLYYRDTRNISQYTVGVCSVNGCGVE
GPFQVNENWTFAETIKGYASFLDH
BO06041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta7-PB | 268 | CG12000-PB | 1..268 | 1..268 | 1417 | 100 | Plus |
Prosbeta7-PA | 268 | CG12000-PA | 1..268 | 1..268 | 1417 | 100 | Plus |