Clone Sequence Records
BO06043.3prime Sequence
942 bp (783 high quality bases) assembled on 2005-12-02
> BO06043.3prime
ATGGTCTAGAAAGCTTGCTTCAAAGGACATTAGGTTGGTGGGCAGAGGTT
TGGGCACTCGCATGGTGGCCAATTTGCAAATGGCATTCGACCAGAGATGC
GTCATCTGGGGACTGTCCGTCCGGAAGCGATAGACGGTGCCCAGAGTTCG
GTGGCACAGTTCGAAGGTGTTCTTGTGCTTGGTGTTATCGCTCACGTGGG
CATACCATCCATCCAATGGACACACTTTGCACGGTTCCCGCTTAAAGTCG
TTGCGTTCGCTTCCTTTAAAGGATTTGGGTGGGAAATACACCAGCGAGTT
GGCCCAAATCTGTAGCCAGTATCGTTGCCAAGATGCCACCGCTGGCTTCC
TTCCCTCCTTTTGAACTGTTTTACGCCGGACACATCCGTGCATGGCGGCT
GCTGCCTCTGGTGACATCAAATCGCAATCGCTGCCGGTAAAATCACACAT
AATTCCCTCTGCACTTTCCAACGATGTTAGATCTGCTTGGGATAGGGCAT
CGCTGTGCTCCAAGACCGAATCATCTAGCAGGTGGTGACGAGGCTGCACT
TGACTCGGATCAAGTTCCAGGTGCAGGTGGTGAGGATGTCCATCGCTGTG
GTTGTGCGTTGCAATCTTGCCAAAAATGTTGGTGCCCAGACTGCGACACT
TGCGATGGCCTGGCACAAATTTTGTGCCGCTTGCCATTCGCATGGAGCCA
ATGGTTTTGGCCGGCGAGAGATTTAGGCATCCAAGGGCCGGAGTAACTAC
TTCCACATTGAAGGACTCTTTTGAGCTGCAGGACGAAGAACTGGGTCCAG
AGGGCGACGCAGGTTCCAGGTTTAGAGAGCGCTTGTACTGATCCTCCTCG
AATATGTTCTGCAACTCCTCTATATACCTTATCGAAGTCAAATACTTTTG
TGTCGCCTCATGCTTCTGCAAATGCTTATAGTTCGACTGTTG
BO06043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-PD | 1998 | CG5522-RD | 1072..1995 | 942..19 | 4620 | 100 | Minus |
CG5522-PC | 1998 | CG5522-RC | 1072..1995 | 942..19 | 4620 | 100 | Minus |
CG5522-PF | 1998 | CG5522-RF | 1072..1995 | 942..19 | 4620 | 100 | Minus |
CG5522-PA | 2109 | CG5522-RA | 1497..2106 | 628..19 | 3050 | 100 | Minus |
CG5522-PE | 2109 | CG5522-RE | 1497..2106 | 628..19 | 3050 | 100 | Minus |
CG5522-PB | 2109 | CG5522-RB | 1497..2106 | 628..19 | 3050 | 100 | Minus |
CG5522-PA | 2109 | CG5522-RA | 1072..1385 | 942..629 | 1570 | 100 | Minus |
CG5522-PE | 2109 | CG5522-RE | 1072..1385 | 942..629 | 1570 | 100 | Minus |
CG5522-PB | 2109 | CG5522-RB | 1072..1385 | 942..629 | 1570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 3478 | CG5522-RF | 1431..2354 | 942..19 | 4620 | 100 | Minus |
CG5522-RC | 3516 | CG5522-RC | 1469..2392 | 942..19 | 4620 | 100 | Minus |
CG5522-RD | 2358 | CG5522-RD | 1330..2253 | 942..19 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16790739..16791348 | 628..19 | 3050 | 100 | Minus |
2R | 25286936 | 2R | 16789712..16789915 | 832..629 | 1020 | 100 | Minus |
2R | 25286936 | 2R | 16789526..16789636 | 942..832 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:50:56 has no hits.
BO06043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:15 Download gff for
BO06043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PF | 1072..1998 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:30 Download gff for
BO06043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PC | 1072..1998 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:01 Download gff for
BO06043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 1330..2258 | 13..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:10 Download gff for
BO06043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 1330..2258 | 13..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:10 Download gff for
BO06043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16789526..16789635 | 833..942 | 100 | -> | Minus |
2R | 16789712..16789915 | 629..832 | 100 | -> | Minus |
2R | 16790739..16791353 | 13..628 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:01 Download gff for
BO06043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12677031..12677140 | 833..942 | 100 | -> | Minus |
arm_2R | 12677217..12677420 | 629..832 | 100 | -> | Minus |
arm_2R | 12678244..12678858 | 13..628 | 99 | | Minus |
BO06043.5prime Sequence
907 bp (796 high quality bases) assembled on 2005-12-02
> BO06043.5prime
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGGAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAG
BO06043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-PA | 2109 | CG5522-RA | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG5522-PD | 1998 | CG5522-RD | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG5522-PC | 1998 | CG5522-RC | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG5522-PE | 2109 | CG5522-RE | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG5522-PB | 2109 | CG5522-RB | 1..891 | 17..907 | 4430 | 99.8 | Plus |
CG5522-PF | 1998 | CG5522-RF | 1..891 | 17..907 | 4430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 3478 | CG5522-RF | 359..1250 | 16..907 | 4445 | 99.9 | Plus |
CG5522-RB | 3589 | CG5522-RB | 359..1250 | 16..907 | 4445 | 99.9 | Plus |
CG5522-RE | 3627 | CG5522-RE | 397..1288 | 16..907 | 4445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16788324..16788666 | 75..417 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 16788791..16789121 | 418..748 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 16789182..16789345 | 744..907 | 805 | 99.4 | Plus |
2R | 25286936 | 2R | 16788200..16788260 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:11:46 has no hits.
BO06043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:17 Download gff for
BO06043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PD | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:32 Download gff for
BO06043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-PF | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:06 Download gff for
BO06043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RE | 397..1288 | 16..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:11 Download gff for
BO06043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RE | 397..1288 | 16..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:11 Download gff for
BO06043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16788200..16788260 | 16..76 | 100 | -> | Plus |
2R | 16788326..16788666 | 77..417 | 100 | -> | Plus |
2R | 16788791..16789118 | 418..745 | 100 | -> | Plus |
2R | 16789184..16789345 | 746..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:06 Download gff for
BO06043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12675705..12675765 | 16..76 | 100 | -> | Plus |
arm_2R | 12675831..12676171 | 77..417 | 100 | -> | Plus |
arm_2R | 12676296..12676623 | 418..745 | 100 | -> | Plus |
arm_2R | 12676689..12676850 | 746..907 | 99 | | Plus |
BO06043.complete Sequence
2029 bp assembled on 2008-08-14
GenBank Submission: FJ630248
> BO06043.complete
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAGGACAACTGGGCGAATCTGCGCTCCTACCTCGAGAGCCTCCGCC
TGCCCTGCATCCCCTATCTGGGTCTCTTTCTCACCGATCTGATCTACATC
GATTTGGCCCACCCACATAAGGGCGGATTGGAGCCAGAGCAGCGTCGCAA
TAAGATGAACAATATATTGCGTGTAATTTCGAACTATCAACAGTCGAACT
ATAAGCATTTGCAGAAGCATGAGGCGACACAAAAGTATTTGACTTCGATA
AGGTATATAGAGGAGTTGCAGAACATATTCGAGGAGGATCAGTACAAGCG
CTCTCTAAACCTGGAACCTGCGTCGCCCTCTGGACCCAGTTCTTCGTCCT
GCAGCTCAAAAGAGTCCTTCAATGTGGAAGTAGTTACTCCGGCCCTTGGA
TGCCTAAATCTCTCGCCGGCCAAAACCATTGGCTCCATGCGAATGGCAAG
CGGCACAAAATTTGTGCCAGGCCATCGCAAGTGTCGCAGTCTGGGCACCA
ACATTTTTGGCAAGATTGCAACGCACAACCACAGCGATGGACATCCTCAC
CACCTGCACCTGGAACTTGATCCGAGTCAAGTGCAGCCTCGTCACCACCT
GCTAGATGATTCGGTCTTGGAGCACAGCGATGCCCTATCCCAAGCAGATC
TAACATCGTTGGAAAGTGCAGAGGGAATTATGTGTGATTTTACCGGCAGC
GATTGCGATTTGATGTCACCAGAGGCAGCAGCCGCCATGCACGGATGTGT
CCGGCGTAAAACAGTTCAAAAGGAGGGAAGGAAGCCAGCGGTGGCATCTT
GGCAACGATACTGGCTACAGATTTGGGCCAACTCGCTGGTGTATTTCCCA
CCCAAATCCTTTAAAGGAAGCGAACGCAACGACTTTAAGCGGGAACCGTG
CAAAGTGTGTCCATTGGATGGATGGTATGCCCACGTGAGCGATAACACCA
AGCACAAGAACACCTTCGAACTGTGCCACCGAACTCTGGGCACCGTCTAT
CGCTTCCGGACGGACAGTCCCCAGATGACGCATCTCTGGTCGAATGCCAT
TTGCAAATTGGCCACCATGCGAGTGCCCAAACCTCTGCCCACCAACCTAA
TGTCCTTTGAAGCAAGCTTTCTAGACCAT
BO06043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 1998 | CG5522-PF | 1..1995 | 17..2011 | 9975 | 100 | Plus |
CG5522-RC | 1998 | CG5522-PC | 1..1995 | 17..2011 | 9975 | 100 | Plus |
CG5522-RD | 1998 | CG5522-PD | 1..1995 | 17..2011 | 9975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-RF | 3478 | CG5522-RF | 359..2354 | 16..2011 | 9980 | 100 | Plus |
CG5522-RC | 3516 | CG5522-RC | 397..2392 | 16..2011 | 9980 | 100 | Plus |
CG5522-RD | 2358 | CG5522-RD | 258..2253 | 16..2011 | 9980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16790739..16791348 | 1402..2011 | 3050 | 100 | Plus |
2R | 25286936 | 2R | 16789182..16789636 | 744..1198 | 2275 | 100 | Plus |
2R | 25286936 | 2R | 16788324..16788666 | 75..417 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 16788791..16789121 | 418..748 | 1655 | 100 | Plus |
2R | 25286936 | 2R | 16789712..16789915 | 1198..1401 | 1020 | 100 | Plus |
2R | 25286936 | 2R | 16788200..16788260 | 16..76 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:56:02 has no hits.
BO06043.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:07 Download gff for
BO06043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RF | 359..2359 | 16..2017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:47 Download gff for
BO06043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 259..2253 | 17..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:59 Download gff for
BO06043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RF | 360..2354 | 17..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:09 Download gff for
BO06043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5522-RD | 259..2253 | 17..2013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:09 Download gff for
BO06043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16788791..16789118 | 418..745 | 100 | -> | Plus |
2R | 16788201..16788260 | 17..76 | 100 | -> | Plus |
2R | 16788326..16788666 | 77..417 | 100 | -> | Plus |
2R | 16789184..16789635 | 746..1197 | 100 | -> | Plus |
2R | 16789712..16789915 | 1198..1401 | 100 | -> | Plus |
2R | 16790739..16791348 | 1402..2013 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:47 Download gff for
BO06043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12676296..12676623 | 418..745 | 100 | -> | Plus |
arm_2R | 12675706..12675765 | 17..76 | 100 | -> | Plus |
arm_2R | 12675831..12676171 | 77..417 | 100 | -> | Plus |
arm_2R | 12676689..12677140 | 746..1197 | 100 | -> | Plus |
arm_2R | 12677217..12677420 | 1198..1401 | 100 | -> | Plus |
arm_2R | 12678244..12678853 | 1402..2013 | 99 | | Plus |
BO06043.pep Sequence
Translation from 16 to 2029
> BO06043.pep
MMRYSEISRDLSTDNLRYSELSRKPTTDYNGYTGQAYAATQFKQSSPPPP
PSQQQQQPTRVSKQRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQAS
KTLNIKSTRRKNSIGCLNSFSSSPDSPGCYYTIAASAAPPSKSQSLPAHA
SIKQLDAVILSALRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDK
HVNTPNIVAFTKRFNHTSFWTVQEILNAEQPKQRAEIITHFIKVAKKLHE
LNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSDIFSDQDNW
ANLRSYLESLRLPCIPYLGLFLTDLIYIDLAHPHKGGLEPEQRRNKMNNI
LRVISNYQQSNYKHLQKHEATQKYLTSIRYIEELQNIFEEDQYKRSLNLE
PASPSGPSSSSCSSKESFNVEVVTPALGCLNLSPAKTIGSMRMASGTKFV
PGHRKCRSLGTNIFGKIATHNHSDGHPHHLHLELDPSQVQPRHHLLDDSV
LEHSDALSQADLTSLESAEGIMCDFTGSDCDLMSPEAAAAMHGCVRRKTV
QKEGRKPAVASWQRYWLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPL
DGWYAHVSDNTKHKNTFELCHRTLGTVYRFRTDSPQMTHLWSNAICKLAT
MRVPKPLPTNLMSFEASFLDH
BO06043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5522-PF | 665 | CG5522-PF | 1..665 | 1..665 | 3525 | 100 | Plus |
CG5522-PC | 665 | CG5522-PC | 1..665 | 1..665 | 3525 | 100 | Plus |
CG5522-PD | 665 | CG5522-PD | 1..665 | 1..665 | 3525 | 100 | Plus |
CG5522-PB | 702 | CG5522-PB | 1..702 | 1..665 | 3471 | 94.6 | Plus |
CG5522-PE | 702 | CG5522-PE | 1..702 | 1..665 | 3471 | 94.6 | Plus |