Clone BO06043 Report

Search the DGRC for BO06043

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG5522-RC
Protein status:BO06043.pep: Imported from assembly
Sequenced Size:2029

Clone Sequence Records

BO06043.3prime Sequence

942 bp (783 high quality bases) assembled on 2005-12-02

> BO06043.3prime
ATGGTCTAGAAAGCTTGCTTCAAAGGACATTAGGTTGGTGGGCAGAGGTT
TGGGCACTCGCATGGTGGCCAATTTGCAAATGGCATTCGACCAGAGATGC
GTCATCTGGGGACTGTCCGTCCGGAAGCGATAGACGGTGCCCAGAGTTCG
GTGGCACAGTTCGAAGGTGTTCTTGTGCTTGGTGTTATCGCTCACGTGGG
CATACCATCCATCCAATGGACACACTTTGCACGGTTCCCGCTTAAAGTCG
TTGCGTTCGCTTCCTTTAAAGGATTTGGGTGGGAAATACACCAGCGAGTT
GGCCCAAATCTGTAGCCAGTATCGTTGCCAAGATGCCACCGCTGGCTTCC
TTCCCTCCTTTTGAACTGTTTTACGCCGGACACATCCGTGCATGGCGGCT
GCTGCCTCTGGTGACATCAAATCGCAATCGCTGCCGGTAAAATCACACAT
AATTCCCTCTGCACTTTCCAACGATGTTAGATCTGCTTGGGATAGGGCAT
CGCTGTGCTCCAAGACCGAATCATCTAGCAGGTGGTGACGAGGCTGCACT
TGACTCGGATCAAGTTCCAGGTGCAGGTGGTGAGGATGTCCATCGCTGTG
GTTGTGCGTTGCAATCTTGCCAAAAATGTTGGTGCCCAGACTGCGACACT
TGCGATGGCCTGGCACAAATTTTGTGCCGCTTGCCATTCGCATGGAGCCA
ATGGTTTTGGCCGGCGAGAGATTTAGGCATCCAAGGGCCGGAGTAACTAC
TTCCACATTGAAGGACTCTTTTGAGCTGCAGGACGAAGAACTGGGTCCAG
AGGGCGACGCAGGTTCCAGGTTTAGAGAGCGCTTGTACTGATCCTCCTCG
AATATGTTCTGCAACTCCTCTATATACCTTATCGAAGTCAAATACTTTTG
TGTCGCCTCATGCTTCTGCAAATGCTTATAGTTCGACTGTTG

BO06043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-PD 1998 CG5522-RD 1072..1995 942..19 4620 100 Minus
CG5522-PC 1998 CG5522-RC 1072..1995 942..19 4620 100 Minus
CG5522-PF 1998 CG5522-RF 1072..1995 942..19 4620 100 Minus
CG5522-PA 2109 CG5522-RA 1497..2106 628..19 3050 100 Minus
CG5522-PE 2109 CG5522-RE 1497..2106 628..19 3050 100 Minus
CG5522-PB 2109 CG5522-RB 1497..2106 628..19 3050 100 Minus
CG5522-PA 2109 CG5522-RA 1072..1385 942..629 1570 100 Minus
CG5522-PE 2109 CG5522-RE 1072..1385 942..629 1570 100 Minus
CG5522-PB 2109 CG5522-RB 1072..1385 942..629 1570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 3478 CG5522-RF 1431..2354 942..19 4620 100 Minus
CG5522-RC 3516 CG5522-RC 1469..2392 942..19 4620 100 Minus
CG5522-RD 2358 CG5522-RD 1330..2253 942..19 4620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16790739..16791348 628..19 3050 100 Minus
2R 25286936 2R 16789712..16789915 832..629 1020 100 Minus
2R 25286936 2R 16789526..16789636 942..832 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:50:56 has no hits.

BO06043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:15 Download gff for BO06043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PF 1072..1998 15..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:30 Download gff for BO06043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PC 1072..1998 15..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:01 Download gff for BO06043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 1330..2258 13..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:10 Download gff for BO06043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 1330..2258 13..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:10 Download gff for BO06043.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16789526..16789635 833..942 100 -> Minus
2R 16789712..16789915 629..832 100 -> Minus
2R 16790739..16791353 13..628 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:01 Download gff for BO06043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12677031..12677140 833..942 100 -> Minus
arm_2R 12677217..12677420 629..832 100 -> Minus
arm_2R 12678244..12678858 13..628 99   Minus

BO06043.5prime Sequence

907 bp (796 high quality bases) assembled on 2005-12-02

> BO06043.5prime
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGGAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAG

BO06043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-PA 2109 CG5522-RA 1..891 17..907 4430 99.8 Plus
CG5522-PD 1998 CG5522-RD 1..891 17..907 4430 99.8 Plus
CG5522-PC 1998 CG5522-RC 1..891 17..907 4430 99.8 Plus
CG5522-PE 2109 CG5522-RE 1..891 17..907 4430 99.8 Plus
CG5522-PB 2109 CG5522-RB 1..891 17..907 4430 99.8 Plus
CG5522-PF 1998 CG5522-RF 1..891 17..907 4430 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 3478 CG5522-RF 359..1250 16..907 4445 99.9 Plus
CG5522-RB 3589 CG5522-RB 359..1250 16..907 4445 99.9 Plus
CG5522-RE 3627 CG5522-RE 397..1288 16..907 4445 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:11:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16788324..16788666 75..417 1715 100 Plus
2R 25286936 2R 16788791..16789121 418..748 1655 100 Plus
2R 25286936 2R 16789182..16789345 744..907 805 99.4 Plus
2R 25286936 2R 16788200..16788260 16..76 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:11:46 has no hits.

BO06043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:17 Download gff for BO06043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PD 1..891 17..907 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:32 Download gff for BO06043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-PF 1..891 17..907 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:06 Download gff for BO06043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RE 397..1288 16..907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:11 Download gff for BO06043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5522-RE 397..1288 16..907 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:11 Download gff for BO06043.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16788200..16788260 16..76 100 -> Plus
2R 16788326..16788666 77..417 100 -> Plus
2R 16788791..16789118 418..745 100 -> Plus
2R 16789184..16789345 746..907 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:06 Download gff for BO06043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12675705..12675765 16..76 100 -> Plus
arm_2R 12675831..12676171 77..417 100 -> Plus
arm_2R 12676296..12676623 418..745 100 -> Plus
arm_2R 12676689..12676850 746..907 99   Plus

BO06043.complete Sequence

2029 bp assembled on 2008-08-14

GenBank Submission: FJ630248

> BO06043.complete
GAAGTTATCAGTCGACATGATGCGATACTCGGAAATCTCACGCGACCTGT
CCACGGATAATCTGCGCTACTCAGAGTTAAGCAGAAAGCCCACCACGGAC
TATAATGGATATACGGGTCAGGCCTATGCCGCGACTCAATTCAAGCAGAG
CTCACCTCCTCCTCCTCCTTCACAACAGCAGCAGCAGCCAACTCGGGTGT
CCAAGCAACGAAGTCCGAATACCAATGGTAGTGCCCACACCATGGCCTGT
TTGCGCCAGGAGAAGACCTACAAGGAGCAGCAAATGGAACCGCCCAGTAT
GCAACCGCAGGCCAGCAAAACTCTAAATATCAAGAGCACGCGCCGCAAGA
ATTCCATCGGTTGTTTGAATAGTTTCTCCTCCTCGCCAGATTCGCCTGGT
TGCTACTACACTATAGCAGCCTCGGCAGCACCACCGTCCAAGTCGCAAAG
TTTACCAGCCCACGCCTCCATCAAGCAGTTGGATGCGGTTATTTTGAGCG
CGTTACGTGTACCCGCCGATGTGTTGGCTAATCAGATTACGCTACTGGAT
TTCCCAGTCTTTGCCCAGATCCAACCGGATGAGCTGAGCAGTTGTGCGTG
GACGAAAAAGGATAAGCATGTCAATACGCCGAACATTGTGGCATTTACTA
AGCGATTTAACCACACGAGCTTTTGGACAGTCCAGGAGATTCTCAATGCC
GAGCAGCCAAAGCAGAGAGCCGAGATTATTACACACTTTATAAAGGTGGC
CAAAAAACTCCACGAGCTCAACAATCTGCACTCGCTGTTTGCCATTATTT
CGGCCATGCAAAGCGCCAGCATATATCGCCTAACTAAAACCTGGGCTTGC
TTATCGAAAAAGGATCGAAATGCATTCGATCGCCTCAGCGATATATTCAG
TGATCAGGACAACTGGGCGAATCTGCGCTCCTACCTCGAGAGCCTCCGCC
TGCCCTGCATCCCCTATCTGGGTCTCTTTCTCACCGATCTGATCTACATC
GATTTGGCCCACCCACATAAGGGCGGATTGGAGCCAGAGCAGCGTCGCAA
TAAGATGAACAATATATTGCGTGTAATTTCGAACTATCAACAGTCGAACT
ATAAGCATTTGCAGAAGCATGAGGCGACACAAAAGTATTTGACTTCGATA
AGGTATATAGAGGAGTTGCAGAACATATTCGAGGAGGATCAGTACAAGCG
CTCTCTAAACCTGGAACCTGCGTCGCCCTCTGGACCCAGTTCTTCGTCCT
GCAGCTCAAAAGAGTCCTTCAATGTGGAAGTAGTTACTCCGGCCCTTGGA
TGCCTAAATCTCTCGCCGGCCAAAACCATTGGCTCCATGCGAATGGCAAG
CGGCACAAAATTTGTGCCAGGCCATCGCAAGTGTCGCAGTCTGGGCACCA
ACATTTTTGGCAAGATTGCAACGCACAACCACAGCGATGGACATCCTCAC
CACCTGCACCTGGAACTTGATCCGAGTCAAGTGCAGCCTCGTCACCACCT
GCTAGATGATTCGGTCTTGGAGCACAGCGATGCCCTATCCCAAGCAGATC
TAACATCGTTGGAAAGTGCAGAGGGAATTATGTGTGATTTTACCGGCAGC
GATTGCGATTTGATGTCACCAGAGGCAGCAGCCGCCATGCACGGATGTGT
CCGGCGTAAAACAGTTCAAAAGGAGGGAAGGAAGCCAGCGGTGGCATCTT
GGCAACGATACTGGCTACAGATTTGGGCCAACTCGCTGGTGTATTTCCCA
CCCAAATCCTTTAAAGGAAGCGAACGCAACGACTTTAAGCGGGAACCGTG
CAAAGTGTGTCCATTGGATGGATGGTATGCCCACGTGAGCGATAACACCA
AGCACAAGAACACCTTCGAACTGTGCCACCGAACTCTGGGCACCGTCTAT
CGCTTCCGGACGGACAGTCCCCAGATGACGCATCTCTGGTCGAATGCCAT
TTGCAAATTGGCCACCATGCGAGTGCCCAAACCTCTGCCCACCAACCTAA
TGTCCTTTGAAGCAAGCTTTCTAGACCAT

BO06043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 1998 CG5522-PF 1..1995 17..2011 9975 100 Plus
CG5522-RC 1998 CG5522-PC 1..1995 17..2011 9975 100 Plus
CG5522-RD 1998 CG5522-PD 1..1995 17..2011 9975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-RF 3478 CG5522-RF 359..2354 16..2011 9980 100 Plus
CG5522-RC 3516 CG5522-RC 397..2392 16..2011 9980 100 Plus
CG5522-RD 2358 CG5522-RD 258..2253 16..2011 9980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16790739..16791348 1402..2011 3050 100 Plus
2R 25286936 2R 16789182..16789636 744..1198 2275 100 Plus
2R 25286936 2R 16788324..16788666 75..417 1715 100 Plus
2R 25286936 2R 16788791..16789121 418..748 1655 100 Plus
2R 25286936 2R 16789712..16789915 1198..1401 1020 100 Plus
2R 25286936 2R 16788200..16788260 16..76 305 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:56:02 has no hits.

BO06043.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:07 Download gff for BO06043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RF 359..2359 16..2017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:47 Download gff for BO06043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 259..2253 17..2013 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:59 Download gff for BO06043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RF 360..2354 17..2013 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:09 Download gff for BO06043.complete
Subject Subject Range Query Range Percent Splice Strand
CG5522-RD 259..2253 17..2013 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:09 Download gff for BO06043.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16788791..16789118 418..745 100 -> Plus
2R 16788201..16788260 17..76 100 -> Plus
2R 16788326..16788666 77..417 100 -> Plus
2R 16789184..16789635 746..1197 100 -> Plus
2R 16789712..16789915 1198..1401 100 -> Plus
2R 16790739..16791348 1402..2013 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:47 Download gff for BO06043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12676296..12676623 418..745 100 -> Plus
arm_2R 12675706..12675765 17..76 100 -> Plus
arm_2R 12675831..12676171 77..417 100 -> Plus
arm_2R 12676689..12677140 746..1197 100 -> Plus
arm_2R 12677217..12677420 1198..1401 100 -> Plus
arm_2R 12678244..12678853 1402..2013 99   Plus

BO06043.pep Sequence

Translation from 16 to 2029

> BO06043.pep
MMRYSEISRDLSTDNLRYSELSRKPTTDYNGYTGQAYAATQFKQSSPPPP
PSQQQQQPTRVSKQRSPNTNGSAHTMACLRQEKTYKEQQMEPPSMQPQAS
KTLNIKSTRRKNSIGCLNSFSSSPDSPGCYYTIAASAAPPSKSQSLPAHA
SIKQLDAVILSALRVPADVLANQITLLDFPVFAQIQPDELSSCAWTKKDK
HVNTPNIVAFTKRFNHTSFWTVQEILNAEQPKQRAEIITHFIKVAKKLHE
LNNLHSLFAIISAMQSASIYRLTKTWACLSKKDRNAFDRLSDIFSDQDNW
ANLRSYLESLRLPCIPYLGLFLTDLIYIDLAHPHKGGLEPEQRRNKMNNI
LRVISNYQQSNYKHLQKHEATQKYLTSIRYIEELQNIFEEDQYKRSLNLE
PASPSGPSSSSCSSKESFNVEVVTPALGCLNLSPAKTIGSMRMASGTKFV
PGHRKCRSLGTNIFGKIATHNHSDGHPHHLHLELDPSQVQPRHHLLDDSV
LEHSDALSQADLTSLESAEGIMCDFTGSDCDLMSPEAAAAMHGCVRRKTV
QKEGRKPAVASWQRYWLQIWANSLVYFPPKSFKGSERNDFKREPCKVCPL
DGWYAHVSDNTKHKNTFELCHRTLGTVYRFRTDSPQMTHLWSNAICKLAT
MRVPKPLPTNLMSFEASFLDH

BO06043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5522-PF 665 CG5522-PF 1..665 1..665 3525 100 Plus
CG5522-PC 665 CG5522-PC 1..665 1..665 3525 100 Plus
CG5522-PD 665 CG5522-PD 1..665 1..665 3525 100 Plus
CG5522-PB 702 CG5522-PB 1..702 1..665 3471 94.6 Plus
CG5522-PE 702 CG5522-PE 1..702 1..665 3471 94.6 Plus