Clone Sequence Records
BO06044.3prime Sequence
821 bp (738 high quality bases) assembled on 2005-12-02
> BO06044.3prime
ATGGTCTAGAAAGCTTGCGTTCGTGTACTGATTCTTGAAGGTAAACTCAG
GATGCCTTTCCACACCATGGAAGAATGCAAAGTCACAGATTCGAATATTC
TGGTCCAGGCTAGACAACTTGGCCACCTCCTCGGCCGTCAGTTCGAAATC
GAAGACGTCCAGATTCTGTTTAAGGCGAGCGGGATTCGTGCTCTTGGGAA
TGGCGGATACACCAGTGTCGATAATCCAGCGGAGGAGGACCTGCGCTGGC
GTCTTGCCATGGCTTGCGGCAATCTCCTTCACCTCAGGGATGTCCATCAG
GTCCGGCAGATCTCTCACGATGCCCGCTCCAGCATTAAACTTGGCGATTC
CCTTGGATCCCAACGGGGAGTAGGCAGTTACGGTAATGTTTTCGGACTTG
CAGAAGTCGACCAGATCTCGCTGCTGCAAATAAACGTGGTGCTCAATCTG
GTTGTTGGCCGGCCGGATCTTGCAGTTCTTCAACAGACGGGCCACCTGAT
CCTTGCTGAAGTTGGATACCCCAATGGACTTGGTGAGACCCTTCTCCACC
AGGGCCTCCATAGCAACCCAGATGGCTGCGTGGTTCGTGGTAACGTCGAC
CTCCATTAGGCCCTCCTTGTCGAGCTTAAAGCTTCCGTCCTCGTTGATAT
TAATTGTGAAGGGAGTGTGCACCAAATATAAGTCCACATAGTCCAGTTGC
AGATCTTCCAGTGACTTTTTGATGGTTGGCTCAACTTCGTGGGGGCGGTT
GGAAACGGGTGGCACCTTGGTCACAATGAACAGCTCCTCCCGCTTGACCT
TGCCGGCGTCCAGCCAACGCT
BO06044.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 990 | CG2767-RA | 185..987 | 821..19 | 4015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:53:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 328..1130 | 821..19 | 4015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006217..8006783 | 65..631 | 2820 | 99.8 | Plus |
3R | 32079331 | 3R | 8006837..8006964 | 625..752 | 640 | 100 | Plus |
3R | 32079331 | 3R | 8007332..8007400 | 753..821 | 345 | 100 | Plus |
3R | 32079331 | 3R | 8006103..8006149 | 19..65 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:53:11 has no hits.
BO06044.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:18 Download gff for
BO06044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 185..990 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:33 Download gff for
BO06044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 185..990 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:55 Download gff for
BO06044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 328..1133 | 15..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:51 Download gff for
BO06044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 328..1133 | 15..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:51 Download gff for
BO06044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006099..8006148 | 15..64 | 96 | <- | Plus |
3R | 8006217..8006776 | 65..624 | 100 | <- | Plus |
3R | 8006837..8006964 | 625..752 | 100 | <- | Plus |
3R | 8007332..8007400 | 753..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:55 Download gff for
BO06044.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3831821..3831870 | 15..64 | 96 | <- | Plus |
arm_3R | 3831939..3832498 | 65..624 | 100 | <- | Plus |
arm_3R | 3832559..3832686 | 625..752 | 100 | <- | Plus |
arm_3R | 3833054..3833122 | 753..821 | 100 | | Plus |
BO06044.5prime Sequence
895 bp (771 high quality bases) assembled on 2005-12-02
> BO06044.5prime
GAAGTTATCAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATG
GAGAGAAGATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAG
GAAATCGAAACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACAT
AGATACGGCGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAA
AGCGTTGGCTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTG
ACCAAGGTGCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCAT
CAAAAAGTCACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGG
TGCACACTCCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTC
GACAAGGAGGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCAT
CTGGGTTGCTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTG
GGGTATCCAACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGC
AAGATCCGGCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCA
GCGAGATCTGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCT
ACTCCCCGTTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGC
ATCGTGAGAGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGAT
TGCCGCAAGCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTA
TCGACACTGGTGTATCCGCCATTCCCAAGAGCACGAATCCCGCTCGCCTT
AAACAGAATCTGGACGTCTTCAATTTCAAACTGACGGCCCGAGAG
BO06044.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 990 | CG2767-RA | 1..873 | 17..889 | 4315 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 144..1016 | 17..889 | 4335 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006285..8006783 | 889..391 | 2450 | 99.4 | Minus |
3R | 32079331 | 3R | 8007332..8007516 | 269..85 | 925 | 100 | Minus |
3R | 32079331 | 3R | 8006837..8006964 | 397..270 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8007895..8007967 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:50:04 has no hits.
BO06044.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:19 Download gff for
BO06044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 1..877 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:34 Download gff for
BO06044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-PA | 1..877 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:12 Download gff for
BO06044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 133..1020 | 7..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:16:48 Download gff for
BO06044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 133..1020 | 7..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:16:48 Download gff for
BO06044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8006279..8006776 | 398..895 | 99 | <- | Minus |
3R | 8006837..8006964 | 270..397 | 100 | <- | Minus |
3R | 8007332..8007512 | 89..269 | 100 | <- | Minus |
3R | 8007896..8007978 | 7..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:12 Download gff for
BO06044.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3832001..3832498 | 398..895 | 99 | <- | Minus |
arm_3R | 3832559..3832686 | 270..397 | 100 | <- | Minus |
arm_3R | 3833054..3833234 | 89..269 | 100 | <- | Minus |
arm_3R | 3833618..3833700 | 7..88 | 95 | | Minus |
BO06044.complete Sequence
1021 bp (1021 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630249
> BO06044.complete
GAAGTTATCAGTCGACATGGTCAACACCAAGTTCTTAACGTTCAACAATG
GAGAGAAGATGCCCGTGATTGGCATCGGCACCTGGCAGGCATCTGATGAG
GAAATCGAAACCGCCATCGATGCGGCTTTGGAAGCTGGGTATCGCCACAT
AGATACGGCGCCAGTCTACGGCAATGAGAAGGCCATCGGAAGAGTCCTAA
AGCGTTGGCTGGACGCCGGCAAGGTCAAGCGGGAGGAGCTGTTCATTGTG
ACCAAGGTGCCACCCGTTTCCAACCGCCCCCACGAAGTTGAGCCAACCAT
CAAAAAGTCACTGGAAGATCTGCAACTGGACTATGTGGACTTATATTTGG
TGCACACTCCCTTCACAATTAATATCAACGAGGACGGAAGCTTTAAGCTC
GACAAGGAGGGCCTAATGGAGGTCGACGTTACCACGAACCACGCAGCCAT
CTGGGTTGCTATGGAGGCCCTGGTGGAGAAGGGTCTCACCAAGTCCATTG
GGGTATCCAACTTCAGCAAGGATCAGGTGGCCCGTCTGTTGAAGAACTGC
AAGATCCGGCCGGCCAACAACCAGATTGAGCACCACGTTTATTTGCAGCA
GCGAGATCTGGTCGACTTCTGCAAGTCCGAAAACATTACCGTAACTGCCT
ACTCCCCGTTGGGATCCAAGGGAATCGCCAAGTTTAATGCTGGAGCGGGC
ATCGTGAGAGATCTGCCGGACCTGATGGACATCCCTGAGGTGAAGGAGAT
TGCCGCAAGCCATGGCAAGACGCCAGCGCAGGTCCTCCTCCGCTGGATTA
TCGACACTGGTGTATCCGCCATTCCCAAGAGCACGAATCCCGCTCGCCTT
AAACAGAATCTGGACGTCTTCGATTTCGAACTGACGGCCGAGGAGGTGGC
CAAGTTGTCTAGCCTGGACCAGAATATTCGAATCTGTGACTTTGCATTCT
TCCATGGTGTGGAAAGGCATCCTGAGTTTACCTTCAAGAATCAGTACACG
AACGCAAGCTTTCTAGACCAT
BO06044.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 990 | CG2767-PA | 1..987 | 17..1003 | 4935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-RA | 1309 | CG2767-RA | 144..1130 | 17..1003 | 4935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8006217..8006783 | 957..391 | 2820 | 99.8 | Minus |
3R | 32079331 | 3R | 8007332..8007516 | 269..85 | 925 | 100 | Minus |
3R | 32079331 | 3R | 8006837..8006964 | 397..270 | 640 | 100 | Minus |
3R | 32079331 | 3R | 8007895..8007967 | 89..17 | 365 | 100 | Minus |
3R | 32079331 | 3R | 8006103..8006149 | 1003..957 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:47 has no hits.
BO06044.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:24 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 1..990 | 17..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:50 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 142..1142 | 7..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:40 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 144..1130 | 17..1005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:24 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 142..1142 | 7..1007 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:30 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2767-RA | 144..1130 | 17..1005 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:30 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8007332..8007512 | 89..269 | 100 | <- | Minus |
3R | 8007896..8007967 | 17..88 | 100 | | Minus |
3R | 8006837..8006964 | 270..397 | 100 | <- | Minus |
3R | 8006101..8006148 | 958..1005 | 95 | <- | Minus |
3R | 8006217..8006776 | 398..957 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:40 Download gff for
BO06044.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3831823..3831870 | 958..1005 | 95 | <- | Minus |
arm_3R | 3831939..3832498 | 398..957 | 100 | <- | Minus |
arm_3R | 3832559..3832686 | 270..397 | 100 | <- | Minus |
arm_3R | 3833054..3833234 | 89..269 | 100 | <- | Minus |
arm_3R | 3833618..3833689 | 17..88 | 100 | | Minus |
BO06044.pep Sequence
Translation from 16 to 1021
> BO06044.pep
MVNTKFLTFNNGEKMPVIGIGTWQASDEEIETAIDAALEAGYRHIDTAPV
YGNEKAIGRVLKRWLDAGKVKREELFIVTKVPPVSNRPHEVEPTIKKSLE
DLQLDYVDLYLVHTPFTININEDGSFKLDKEGLMEVDVTTNHAAIWVAME
ALVEKGLTKSIGVSNFSKDQVARLLKNCKIRPANNQIEHHVYLQQRDLVD
FCKSENITVTAYSPLGSKGIAKFNAGAGIVRDLPDLMDIPEVKEIAASHG
KTPAQVLLRWIIDTGVSAIPKSTNPARLKQNLDVFDFELTAEEVAKLSSL
DQNIRICDFAFFHGVERHPEFTFKNQYTNASFLDH
BO06044.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2767-PA | 329 | CG2767-PA | 1..329 | 1..329 | 1705 | 100 | Plus |
CG6084-PA | 316 | CG6084-PA | 8..310 | 9..319 | 622 | 42.8 | Plus |
CG6084-PD | 316 | CG6084-PD | 8..316 | 9..327 | 616 | 42 | Plus |
CG10638-PD | 317 | CG10638-PD | 10..317 | 10..327 | 604 | 40.4 | Plus |
CG10638-PA | 317 | CG10638-PA | 10..317 | 10..327 | 604 | 40.4 | Plus |