Clone Sequence Records
BO06045.3prime Sequence
891 bp (796 high quality bases) assembled on 2005-12-02
> BO06045.3prime
ATGGTCTAGAAAGCTTGCGAACTCGTCGTTGAACGGGTAGTACTTATGGC
CCGACATTCCCGAAAAGGGTACCGTGCGCTGCCCGGTGTGATACTGCTCC
ATGCCGGCGACGTCGTCTGGACTCAGCTCGAAGTCGAAGACGCGGAAGTT
CTCCTCGATGCGGGCCTTGTTCGACGACTTGGGCAGTGGCACCACGCCTA
GCTGGACCAGATAACGCAGGCAGATCTGTGCCGTGGTGCGGCCGTACTTC
TTGGCCAGATTCTGGGCATGCTCGTCGTAGAGGAAGGGCGGCCACTGCCG
AGCGGGCTGGGGACGTGCCAGGGGGCAGTAGGCGCAGATGACCAGTCCGT
GGCGCTTGGCATGCTCCCGGAGCTGGCGCTGCTGAAAGCCTGGGTGGCAC
TCCACCTGGTTCACTACCGGCCGGATGCGGCAGTTGGCTAGCACTCGCTC
CGTCTGCGCGGCGTTGAAGTTGGACAGGCCGATGCTGCGCGTCAGGCCCA
GATCCACCAGCTTCTCCATCTCGCGCCAGGTGTCCAGATAGTCCACGTCC
GTCAGCTCCAGGGTTCCGTGCACGTTGCTGTCATTGTGGAACTTCTGGCC
CACCGGCATGTGCATCAGGTAGAGGTCTACGTATTCCAAACCCAGGTTGC
TAAGGCTCAGGCGGCAGGCGCGCTCCACCAATGCAGGGTCGTGGTGGATT
CCGCCTAGCTTGGTGGTCACGAAAACCTCCTCGCGTGTGACCACTCCCTC
GGCGATCTTCTCGGAGATCGCCTGGCCCACCTCAGCCTCGTTCTCGTAGA
CGAAGGCGGTGTCCCAGTGCCGGTAGCCCACGTCGAGGGCGTGGCGCGTT
GAGTGGTAGGCGTCCGACTCGAACGACTTCCAGGTGCCAAG
BO06045.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-PA | 936 | CG9436-RA | 61..933 | 891..19 | 4315 | 99.7 | Minus |
CG10863-PA | 951 | CG10863-RA | 433..476 | 534..491 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 1303 | CG9436-RA | 193..1065 | 891..19 | 4335 | 99.8 | Minus |
CG10863-RA | 1089 | CG10863-RA | 466..537 | 534..463 | 210 | 86.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6757839..6758711 | 19..891 | 4335 | 99.8 | Plus |
3L | 28110227 | 3L | 3941683..3941754 | 463..534 | 210 | 86.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:10:51 has no hits.
BO06045.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:20 Download gff for
BO06045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 61..936 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:35 Download gff for
BO06045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 61..936 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:14 Download gff for
BO06045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 193..1065 | 19..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:37 Download gff for
BO06045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 193..1065 | 19..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:37 Download gff for
BO06045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6757839..6758711 | 19..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:14 Download gff for
BO06045.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2645344..2646216 | 19..891 | 99 | | Plus |
BO06045.5prime Sequence
934 bp (782 high quality bases) assembled on 2005-12-02
> BO06045.5prime
GAAGTTATCAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACA
ACGGGCGCGAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAG
TCGGACGCCTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCA
CCTGGACACCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGA
TCTCCGAGAAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTG
ACCACCAAGCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGC
CTGCCGCCTGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACC
TGATGCACATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCAC
GGAACCCTGGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGAT
GGAGAAGCTGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACT
TCAACGCCGCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCG
GTAGTGAACCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCG
GGAGCATGCCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGG
CACGTCCCCAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCAT
GCCCAGAATCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCT
GCGTTATCTGGTCCAGCTAGGCGTGGTGCCACTGCCCCAGTCGTCGAACA
AGGCCCGCATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCA
GACGACGTCGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACC
CTTTTCGGGGATGTCGGGGCATAAGTACTACCCG
BO06045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-PA | 936 | CG9436-RA | 1..918 | 17..934 | 4515 | 99.6 | Plus |
CG10863-PA | 951 | CG10863-RA | 433..476 | 434..477 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 1303 | CG9436-RA | 133..1050 | 17..934 | 4545 | 99.7 | Plus |
CG10863-RA | 1089 | CG10863-RA | 466..537 | 434..505 | 210 | 86.1 | Plus |
CG12766-RA | 1075 | CG12766-RA | 152..289 | 124..261 | 180 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6757854..6758771 | 934..17 | 4545 | 99.7 | Minus |
3L | 28110227 | 3L | 3941683..3941754 | 505..434 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:51:08 has no hits.
BO06045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:21 Download gff for
BO06045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:37 Download gff for
BO06045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-PA | 1..918 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:53 Download gff for
BO06045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1050 | 17..934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:18 Download gff for
BO06045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1050 | 17..934 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:18 Download gff for
BO06045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6757854..6758771 | 17..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:53 Download gff for
BO06045.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2645359..2646276 | 17..934 | 99 | | Minus |
BO06045.complete Sequence
967 bp (967 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630250
> BO06045.complete
GAAGTTATCAGTCGACATGACCAATCTGGCTCCCACCATCCGGCTGAACA
ACGGGCGCGAGATGCCAACTCTGGGCCTTGGCACCTGGAAGTCGTTCGAG
TCGGACGCCTACCACTCAACGCGCCACGCCCTCGACGTGGGCTACCGGCA
CCTGGACACCGCCTTCGTCTACGAGAACGAGGCTGAGGTGGGCCAGGCGA
TCTCCGAGAAGATCGCCGAGGGAGTGGTCACACGCGAGGAGGTTTTCGTG
ACCACCAAGCTAGGCGGAATCCACCACGACCCTGCATTGGTGGAGCGCGC
CTGCCGCCTGAGCCTTAGCAACCTGGGTTTGGAATACGTAGACCTCTACC
TGATGCACATGCCGGTGGGCCAGAAGTTCCACAATGACAGCAACGTGCAC
GGAACCCTGGAGCTGACGGACGTGGACTATCTGGACACCTGGCGCGAGAT
GGAGAAGCTGGTGGATCTGGGCCTGACGCGCAGCATCGGCCTGTCCAACT
TCAACGCCGCGCAGACGGAGCGAGTGCTAGCCAACTGCCGCATCCGGCCG
GTAGTGAACCAGGTGGAGTGCCACCCAGGCTTTCAGCAGCGCCAGCTCCG
GGAGCATGCCAAGCGCCACGGACTGGTCATCTGCGCCTACTGCCCCCTGG
CACGTCCCCAGCCCGCTCGGCAGTGGCCGCCCTTCCTCTACGACGAGCAT
GCCCAGAATCTGGCCAAGAAGTACGGCCGCACCACGGCACAGATCTGCCT
GCGTTATCTGGTCCAGCTAGGCGTGGTGCCACTGCCCAAGTCGTCGAACA
AGGCCCGCATCGAGGAGAACTTCCGCGTCTTCGACTTCGAGCTGAGTCCA
GACGACGTCGCCGGCATGGAGCAGTATCACACCGGGCAGCGCACGGTACC
CTTTTCGGGAATGTCGGGCCATAAGTACTACCCGTTCAACGACGAGTTCG
CAAGCTTTCTAGACCAT
BO06045.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 936 | CG9436-PA | 1..933 | 17..949 | 4665 | 100 | Plus |
CG10863-RA | 951 | CG10863-PA | 433..504 | 434..505 | 210 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:47:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-RA | 1303 | CG9436-RA | 133..1065 | 17..949 | 4665 | 100 | Plus |
CG10863-RA | 1089 | CG10863-RA | 466..537 | 434..505 | 210 | 86.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6757839..6758771 | 949..17 | 4665 | 100 | Minus |
3L | 28110227 | 3L | 3941683..3941754 | 505..434 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:47:25 has no hits.
BO06045.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:25 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 1..936 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:52 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 129..1061 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:19 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1065 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:25 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 116..1048 | 17..949 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:26 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9436-RA | 133..1065 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:26 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6757837..6758771 | 17..951 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:19 Download gff for
BO06045.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2645342..2646276 | 17..951 | 99 | | Minus |
BO06045.pep Sequence
Translation from 16 to 967
> BO06045.pep
MTNLAPTIRLNNGREMPTLGLGTWKSFESDAYHSTRHALDVGYRHLDTAF
VYENEAEVGQAISEKIAEGVVTREEVFVTTKLGGIHHDPALVERACRLSL
SNLGLEYVDLYLMHMPVGQKFHNDSNVHGTLELTDVDYLDTWREMEKLVD
LGLTRSIGLSNFNAAQTERVLANCRIRPVVNQVECHPGFQQRQLREHAKR
HGLVICAYCPLARPQPARQWPPFLYDEHAQNLAKKYGRTTAQICLRYLVQ
LGVVPLPKSSNKARIEENFRVFDFELSPDDVAGMEQYHTGQRTVPFSGMS
GHKYYPFNDEFASFLDH
BO06045.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9436-PA | 311 | CG9436-PA | 1..311 | 1..311 | 1661 | 100 | Plus |
CG10638-PD | 317 | CG10638-PD | 3..317 | 4..311 | 950 | 57.1 | Plus |
CG10638-PA | 317 | CG10638-PA | 3..317 | 4..311 | 950 | 57.1 | Plus |
CG10863-PA | 316 | CG10863-PA | 1..316 | 1..311 | 910 | 51.9 | Plus |
CG12766-PA | 320 | CG12766-PA | 12..320 | 11..314 | 835 | 50.5 | Plus |