Clone Sequence Records
BO06046.3prime Sequence
933 bp (850 high quality bases) assembled on 2005-12-02
> BO06046.3prime
ATGGTCTAGAAAGCTTGCGGTGCTCGGTGGTGGCTGATTGCCCGGCTGCT
GTTCATTGCCAGGATTTGCGTTCGAATTGGGAAAGCCAGTCAATTGGCTG
GTCATGTTATAGATCATTTGCACCATGTCATTGGGCAGGGTCGGGGCATT
GCCGCCGCCGAACTGCTGGCGAATGGTGTTCATGATCATTGGATTCTGAA
GCATCGACAGCAGCTGCTCCACGTCGATCTCGGCGTTGTTGAACAAATTC
CTAACCATTGGCTGGGACAGCATGTTGATTAGGTCTTCCCTTAATCGCCC
CGTTTGGGGCGGCTGGTTCCTGGCGTTTCTGGCCGCTTCCAGGTTGCTCT
TGTACACCTCGTTGTCCGGTTCCAGCTCGATGGCCTTGGCGTAGGCCTGT
TCCGCCTTCTCGAAATTGCCCATGTTGGAGTACGCCACGCCCAGGCGGCA
GTACGCCTTGCTGTAGTTGTTGTTGTACACCAGGGCGGACTTGCAATCGG
TTACGGCGCGTTCGTTCTCACCCAGCCGGATGTGGGCCGCAGCCCGATTG
CAGTAGAAGATCGGATTCTTGGGATCGAAGGCGATGGCACGATTGTACTG
CAGCAGTGCTTCATTGTACTTGTTCTCCTTCATCAGCCGGTTGCCCTCGT
TCTTGATGGATTCGGCCAGGGCCAGGGATTCCGGATTGCGTTCTGTATAC
AGCGACTGGAAGAGCTCGAACATGTCAATGTTATTGGGAACGGCGGCGGC
GGCGGCGCCGATACCAGCACTTCCGCTGGCCACCGCATCATCGTCCGGTG
CGCTCGCAGTGCTGCTGCTCTGTGTGGTGGCCTGCTCCTCACCAGCCGCA
GCCGGCGCTGCCTCCACATCATCGCCCAAGTCAAAGGCCGCCTGCAGGCA
CTGGATCGCCACCTCGATGCTTTCGGTCTGGTC
BO06046.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5094-PA | 996 | Sgt-RA | 79..993 | 933..19 | 4575 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgt-RB | 1463 | CG5094-RB | 356..1270 | 933..19 | 4575 | 100 | Minus |
| Sgt-RA | 1284 | CG5094-RA | 177..1091 | 933..19 | 4575 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17473666..17474580 | 933..19 | 4575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:25:53 has no hits.
BO06046.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:22 Download gff for
BO06046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-PA | 79..996 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:39 Download gff for
BO06046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5094-PA | 79..996 | 18..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:53 Download gff for
BO06046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 177..1091 | 19..933 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:29 Download gff for
BO06046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 177..1091 | 19..933 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:29 Download gff for
BO06046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17473666..17474580 | 19..933 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:53 Download gff for
BO06046.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17473666..17474580 | 19..933 | 100 | | Minus |
BO06046.5prime Sequence
919 bp (725 high quality bases) assembled on 2005-12-02
> BO06046.5prime
GAAGTTATCAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAAC
ACCATTCGCCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCNATGA
CATGGTGCAAATGATCTAT
BO06046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5094-PA | 996 | Sgt-RA | 1..903 | 17..919 | 4496 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgt-RB | 1463 | CG5094-RB | 278..1180 | 17..919 | 4504 | 99.9 | Plus |
| Sgt-RA | 1284 | CG5094-RA | 99..1001 | 17..919 | 4504 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17473588..17474490 | 17..919 | 4504 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:26:01 has no hits.
BO06046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:23 Download gff for
BO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:40 Download gff for
BO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5094-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:54 Download gff for
BO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 99..1001 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:45 Download gff for
BO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 99..1001 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:45 Download gff for
BO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17473588..17474490 | 17..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:54 Download gff for
BO06046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17473588..17474490 | 17..919 | 99 | | Plus |
BO06046.complete Sequence
1027 bp (1027 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630251
> BO06046.complete
GAAGTTATCAGTCGACATGCCGGACGCAGTGCAGCAGAGTTTCGTGCGTA
GCTTCATTGACTACCTGAAGAAGCAGGGGGACGTGATGTCGCCGGACCAG
ACCGAAAGCATCGAGGTGGCGATCCAGTGCCTGCAGGCGGCCTTTGACTT
GGGCGATGATGTGGAGGCAGCGCCGGCTGCGGCTGGTGAGGAGCAGGCCA
CCACACAGAGCAGCAGCACTGCGAGCGCACCGGACGATGATGCGGTGGCC
AGCGGAAGTGCTGGTATCGGCGCCGCCGCCGCCGCCGTTCCCAATAACAT
TGACATGTTCGAGCTCTTCCAGTCGCTGTATACAGAACGCAATCCGGAAT
CCCTGGCCCTGGCCGAATCCATCAAGAACGAGGGCAACCGGCTGATGAAG
GAGAACAAGTACAATGAAGCACTGCTGCAGTACAATCGTGCCATCGCCTT
CGATCCCAAGAATCCGATCTTCTACTGCAATCGGGCTGCGGCCCACATCC
GGCTGGGTGAGAACGAACGCGCCGTAACCGATTGCAAGTCCGCCCTGGTG
TACAACAACAACTACAGCAAGGCGTACTGCCGCCTGGGCGTGGCGTACTC
CAACATGGGCAATTTCGAGAAGGCGGAACAGGCCTACGCCAAGGCCATCG
AGCTGGAACCGGACAACGAGGTGTACAAGAGCAACCTGGAAGCGGCCAGA
AACGCCAGGAACCAGCCGCCCCAAACGGGGCGATTAAGGGAAGACCTAAT
CAACATGCTGTCCCAGCCAATGGTTAGGAATTTGTTCAACAACGCCGAGA
TCGACGTGGAGCAGCTGCTGTCGATGCTTCAGAATCCAATGATCATGAAC
ACCATTCGCCAGCAGTTCGGCGGCGGCAATGCCCCGACCCTGCCCAATGA
CATGGTGCAAATGATCTATAACATGACCAGCCAATTGACTGGCTTTCCCA
ATTCGAACGCAAATCCTGGCAATGAACAGCAGCCGGGCAATCAGCCACCA
CCGAGCACCGCAAGCTTTCTAGACCAT
BO06046.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgt-RB | 996 | CG5094-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
| Sgt-RA | 996 | CG5094-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgt-RB | 1463 | CG5094-RB | 278..1270 | 17..1009 | 4965 | 100 | Plus |
| Sgt-RA | 1284 | CG5094-RA | 99..1091 | 17..1009 | 4965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17473588..17474580 | 17..1009 | 4965 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:46:30 has no hits.
BO06046.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:26 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 1..996 | 17..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:53 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 106..1098 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:55 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 99..1091 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:26 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 106..1098 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:19 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sgt-RA | 99..1091 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:19 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17473588..17474580 | 17..1011 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:55 Download gff for
BO06046.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17473588..17474580 | 17..1011 | 99 | | Plus |
BO06046.pep Sequence
Translation from 16 to 1027
> BO06046.pep
MPDAVQQSFVRSFIDYLKKQGDVMSPDQTESIEVAIQCLQAAFDLGDDVE
AAPAAAGEEQATTQSSSTASAPDDDAVASGSAGIGAAAAAVPNNIDMFEL
FQSLYTERNPESLALAESIKNEGNRLMKENKYNEALLQYNRAIAFDPKNP
IFYCNRAAAHIRLGENERAVTDCKSALVYNNNYSKAYCRLGVAYSNMGNF
EKAEQAYAKAIELEPDNEVYKSNLEAARNARNQPPQTGRLREDLINMLSQ
PMVRNLFNNAEIDVEQLLSMLQNPMIMNTIRQQFGGGNAPTLPNDMVQMI
YNMTSQLTGFPNSNANPGNEQQPGNQPPPSTASFLDH
BO06046.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sgt-PB | 331 | CG5094-PB | 1..331 | 1..331 | 1702 | 100 | Plus |
| Sgt-PA | 331 | CG5094-PA | 1..331 | 1..331 | 1702 | 100 | Plus |
| Hop-PA | 490 | CG2720-PA | 306..485 | 109..287 | 212 | 29 | Plus |
| Hop-PA | 490 | CG2720-PA | 7..107 | 119..219 | 182 | 32.7 | Plus |
| CG18472-PA | 469 | CG18472-PA | 224..339 | 111..225 | 175 | 32.8 | Plus |
| unc-45-PA | 947 | CG2708-PA | 6..143 | 109..237 | 167 | 32.6 | Plus |
