Clone Sequence Records
BO06047.3prime Sequence
922 bp (740 high quality bases) assembled on 2005-12-02
> BO06047.3prime
ATGGTCTAGAAAGCTTGCCTGATTATTTGCTCTTCGGTACCAGAAACGTG
CCCGAAAGTCGTCGGAGCAGGTGAGGAAAGCAGGACCATTGGGCGAATGC
GTAATATAGCGGACAGGTCCGTTGTGTCCAAGCGAGTTAAGGGTCAGGCG
GCAGCCGTTACGGGAGTTCCACGAGCAAAGCGAAGTGGTGGCCTCGTCGG
GGAAAAGCACGTAATCCTCTGTGTGGTTGAATACAGCCTCTGTCTGGTGC
TCCTGCTTGCCGGTGGTTCCAGCGCCCGTGTACGTCTGAATGGGACGACT
GGTACACAGCTCCCACAGATAAACCAGTGAATCCATACCGGAAGATAGGA
GGTACTTTCCATTCCGCGTAAACTCCAGTGAGCATATTGCCGCTCCGCCA
TGCGCCTCGGCAATGGTGTTGATGCACCGCCCGCTGATCCCATCCCATAT
TTTGATGTCACCATCATAGCTGCCTGTGGCGTAGAGTTTCCCCGTGGGCG
AATATTTCACGCAAGTAACTCCAGCCTTGTGCTGCTGCGAGGGAATGGCA
CTCACGAAGCATTGGGTGGTGGCCACATCGTAGACCCGCAAGACGTTATG
TTCCGTTCCGATGGCTACGTAGTCACCAGTAGGATGAAAAGACAGGCACA
GCACCGGCTCGCAGTCGGTGAACACCTTGTGGGCCTTCTTTACCGAAGGC
TTGGCAATGTCAAACAACTTAACAGTGCCATCGCGCGAGGCGGAGGCCAG
GATGTGCTCCTTGGGATGGAACTCCAGGTAAGACACTTCATCAGTGTGAT
CATAGAGCGTGCGAATCACTGGATGGCCTTGTTGTTCCCTGCCCGGCTCG
ATATCTTCGGGCGCAGACTTCGCCAGCATCCGCTCCACGTCCAGAATCTT
GATGCTGGCATCCACGCTCCCG
BO06047.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2261-PA | 1275 | CstF-50-RA | 369..1272 | 922..19 | 4520 | 100 | Minus |
| CG2261-PB | 957 | CstF-50-RB | 369..936 | 922..355 | 2840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-50-RA | 1407 | CG2261-RA | 452..1355 | 922..19 | 4520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:51:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31735945..31736512 | 355..922 | 2840 | 100 | Plus |
| 3R | 32079331 | 3R | 31735555..31735892 | 19..356 | 1690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:51:45 has no hits.
BO06047.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:24 Download gff for
BO06047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2261-PA | 369..1275 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:41 Download gff for
BO06047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2261-PA | 369..1275 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:35 Download gff for
BO06047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 452..1358 | 15..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:19 Download gff for
BO06047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 452..1358 | 15..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:19 Download gff for
BO06047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31735551..31735890 | 15..354 | 99 | <- | Plus |
| 3R | 31735945..31736512 | 355..922 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:35 Download gff for
BO06047.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27561273..27561612 | 15..354 | 99 | <- | Plus |
| arm_3R | 27561667..27562234 | 355..922 | 100 | | Plus |
BO06047.5prime Sequence
896 bp (825 high quality bases) assembled on 2005-12-02
> BO06047.5prime
GAAGTTATCAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAG
TGAAGAACCGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTAC
GACGGCCTGGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGA
CCAGTGCGCTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGC
AGACGCTGAGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGC
ATAGACTTGGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACA
TTCCTACGAAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCG
GCGCCTTCAGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCC
AGCATCAAGATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGA
AGATATCGAGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGC
TCTATGATCACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAG
CACATCCTGGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACAT
TGCCAAGCCTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGC
CGGTGCTGTGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGA
ACGGAACATAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTT
CGTGAGTGCCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGA
AATATTCGCCCACGGGGAAACTCTACGCCACAGGCAGCTATGATGGTGAC
ATCAAAATATGGGATGGGATCAGCGGGCGGTGCATCAACACCATTG
BO06047.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2261-PA | 1275 | CstF-50-RA | 1..880 | 17..896 | 4400 | 100 | Plus |
| CG2261-PB | 957 | CstF-50-RB | 1..880 | 17..896 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-50-RA | 1407 | CG2261-RA | 83..963 | 16..896 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31736001..31736881 | 896..16 | 4405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:00:55 has no hits.
BO06047.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:25 Download gff for
BO06047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2261-PB | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:43 Download gff for
BO06047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2261-PB | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:11 Download gff for
BO06047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 77..963 | 10..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:48 Download gff for
BO06047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 77..963 | 10..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:48 Download gff for
BO06047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31736001..31736887 | 10..896 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:11 Download gff for
BO06047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27561723..27562609 | 10..896 | 99 | | Minus |
BO06047.complete Sequence
1306 bp (1306 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630252
> BO06047.complete
GAAGTTATCAGTCGACATGCGTGATGAGATTTTGGACCCCAGTAACCTAG
TGAAGAACCGGGAGATACTCTACCGACTGATGATCAGCCAGCTGATGTAC
GACGGCCTGGAGAAGTTCGCCATGGAGCTGTCCATGCTGGTGAAGGCGGA
CCAGTGCGCTCCCAGTGAACGCCTGCTGCACGTAATGATTGCAGGGATGC
AGACGCTGAGCGACAAGGACAAAACCAACTCGGATGATGTGCTGCCCGGC
ATAGACTTGGAATTCGAGCCGGAGGCTTCGGCCTTGGCCCCGGAACCACA
TTCCTACGAAACCGCGTATGTGACCTCGCACAAGCAGGCCTGTCGCGCCG
GCGCCTTCAGTTGCGATGGTTCCCTGGTGGCCACCGGGAGCGTGGATGCC
AGCATCAAGATTCTGGACGTGGAGCGGATGCTGGCGAAGTCTGCGCCCGA
AGATATCGAGCCGGGCAGGGAACAACAAGGCCATCCAGTGATTCGCACGC
TCTATGATCACACTGATGAAGTGTCTTACCTGGAGTTCCATCCCAAGGAG
CACATCCTGGCCTCCGCCTCGCGCGATGGCACTGTTAAGTTGTTTGACAT
TGCCAAGCCTTCGGTAAAGAAGGCCCACAAGGTGTTCACCGACTGCGAGC
CGGTGCTGTGCCTGTCTTTTCATCCTACTGGTGACTACGTAGCCATCGGA
ACGGAACATAACGTCTTGCGGGTCTACGATGTGGCCACCACCCAATGCTT
CGTGAGTGCCATTCCCTCGCAGCAGCACAAGGCTGGAGTTACTTGCGTGA
AATATTCGCCCACGGGGAAACTCTACGCCACAGGCAGCTATGATGGTGAC
ATCAAAATATGGGATGGGATCAGCGGGCGGTGCATCAACACCATTGCCGA
GGCGCATGGCGGAGCGGCAATATGCTCACTGGAGTTTACGCGGAATGGAA
AGTACCTCCTATCTTCCGGTATGGATTCACTGGTTTATCTGTGGGAGCTG
TGTACCAGTCGTCCCATTCAGACGTACACGGGCGCTGGAACCACCGGCAA
GCAGGAGCACCAGACAGAGGCTGTATTCAACCACACAGAGGATTACGTGC
TTTTCCCCGACGAGGCCACCACTTCGCTTTGCTCGTGGAACTCCCGTAAC
GGCTGCCGCCTGACCCTTAACTCGCTTGGACACAACGGACCTGTCCGCTA
TATTACGCATTCGCCCAATGGTCCTGCTTTCCTCACCTGCTCCGACGACT
TTCGGGCACGTTTCTGGTACCGAAGAGCAAATAATCAGGCAAGCTTTCTA
GACCAT
BO06047.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-50-RA | 1275 | CG2261-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-50-RA | 1407 | CG2261-RA | 83..1355 | 16..1288 | 6365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31735945..31736881 | 952..16 | 4685 | 100 | Minus |
| 3R | 32079331 | 3R | 31735555..31735892 | 1288..951 | 1690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:59:08 has no hits.
BO06047.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:28 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 1..1275 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:55 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 56..1337 | 10..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:25 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 84..1355 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:28 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 56..1337 | 10..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:53 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-50-RA | 84..1355 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:53 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31735553..31735890 | 953..1290 | 99 | <- | Minus |
| 3R | 31735945..31736880 | 17..952 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:25 Download gff for
BO06047.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27561275..27561612 | 953..1290 | 99 | <- | Minus |
| arm_3R | 27561667..27562602 | 17..952 | 100 | | Minus |
BO06047.pep Sequence
Translation from 16 to 1306
> BO06047.pep
MRDEILDPSNLVKNREILYRLMISQLMYDGLEKFAMELSMLVKADQCAPS
ERLLHVMIAGMQTLSDKDKTNSDDVLPGIDLEFEPEASALAPEPHSYETA
YVTSHKQACRAGAFSCDGSLVATGSVDASIKILDVERMLAKSAPEDIEPG
REQQGHPVIRTLYDHTDEVSYLEFHPKEHILASASRDGTVKLFDIAKPSV
KKAHKVFTDCEPVLCLSFHPTGDYVAIGTEHNVLRVYDVATTQCFVSAIP
SQQHKAGVTCVKYSPTGKLYATGSYDGDIKIWDGISGRCINTIAEAHGGA
AICSLEFTRNGKYLLSSGMDSLVYLWELCTSRPIQTYTGAGTTGKQEHQT
EAVFNHTEDYVLFPDEATTSLCSWNSRNGCRLTLNSLGHNGPVRYITHSP
NGPAFLTCSDDFRARFWYRRANNQASFLDH
BO06047.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-50-PA | 424 | CG2261-PA | 1..424 | 1..424 | 2250 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 54..281 | 88..339 | 246 | 26.6 | Plus |
| wds-PA | 361 | CG17437-PA | 54..281 | 88..339 | 246 | 26.6 | Plus |
| wds-PB | 361 | CG17437-PB | 110..326 | 102..339 | 232 | 25.4 | Plus |
| wds-PA | 361 | CG17437-PA | 110..326 | 102..339 | 232 | 25.4 | Plus |
| CG12325-PB | 949 | CG12325-PB | 310..531 | 168..400 | 218 | 26.9 | Plus |
| CG12325-PA | 949 | CG12325-PA | 310..531 | 168..400 | 218 | 26.9 | Plus |
| wds-PB | 361 | CG17437-PB | 67..268 | 161..417 | 175 | 22.3 | Plus |
| wds-PA | 361 | CG17437-PA | 67..268 | 161..417 | 175 | 22.3 | Plus |
