Clone BO06049 Report

Search the DGRC for BO06049

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptArf79F-RA
Protein status:BO06049.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO06049.3prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-02

> BO06049.3prime
ATGGTCTAGAAAGCTTGCGCGATTAGCGTTCTTCAATTGGTTGGACAGCC
AGTCGAGTCCCTCGTACAGCCCATCACCGCTAGTTGCACACGTCGCCTGG
ATGTACCAGTTGCGGTTTCTGAGTGAGTGCAAGCCGAGCTTGTCGGTGAT
TTCGGCCGCGTTCATTGCATTTGGCAGATCCTGTTTGTTTGCGAAGATTA
GTAAGACTGCATCCCTCAGCTCGTCCTCTGCCAGCATGCGCATCAACTCC
TCTCTCGCCTCACCGATACGCTCTCGGTCATTGCTGTCCACGACGAAGAT
AAGACCTTGTGTATTCTGGAAGTAGTGCCTCCACAGGGGACGAATTTTGT
CTTGGCCACCCACATCCCACACTGTAAAGCTAATATTCTTGTATTCTACA
GTCTCCACATTGAAACCAATGGTAGGTATCGTTGTAACAATTTCGCCTAA
TTTGAGTTTGTACAGAATTGTGGTTTTACCAGCGGCATCCAAACCGACCA
TCAATATCCTCATTTCCTTTTTGCCGAATAGGCCTTTGAATAAGTTCGCG
AATACGTTTCCCATGTCGACTGATAACT

BO06049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8385-PA 549 Arf79F-RA 1..546 564..19 2730 100 Minus
CG8385-PD 549 Arf79F-RD 1..546 564..19 2730 100 Minus
CG8385-PB 549 Arf79F-RB 1..546 564..19 2730 100 Minus
CG8385-PE 549 Arf79F-RE 1..546 564..19 2730 100 Minus
CG8385-PC 549 Arf79F-RC 1..546 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 1464 CG8385-RJ 341..887 565..19 2735 100 Minus
Arf79F-RI 1459 CG8385-RI 336..882 565..19 2735 100 Minus
Arf79F-RH 1456 CG8385-RH 205..751 565..19 2735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22869085..22869248 19..182 820 100 Plus
3L 28110227 3L 22869840..22869990 415..565 755 100 Plus
3L 28110227 3L 22869345..22869475 180..310 640 99.2 Plus
3L 28110227 3L 22869664..22869775 306..417 560 100 Plus
4 1348131 4 1124441..1124667 492..266 505 81.5 Minus
2R 25286936 2R 15323847..15324028 468..287 235 75.3 Minus
Blast to na_te.dros performed on 2015-02-13 12:01:08 has no hits.

BO06049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:26 Download gff for BO06049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PE 1..549 15..564 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:44 Download gff for BO06049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PC 1..549 15..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:14 Download gff for BO06049.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..756 11..572 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:57 Download gff for BO06049.3prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..756 11..572 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:57 Download gff for BO06049.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22869080..22869246 11..180 97 <- Plus
3L 22869346..22869471 181..306 100 <- Plus
3L 22869665..22869774 307..416 100 <- Plus
3L 22869842..22869994 417..572 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:14 Download gff for BO06049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22862180..22862346 11..180 97 <- Plus
arm_3L 22862446..22862571 181..306 100 <- Plus
arm_3L 22862765..22862874 307..416 100 <- Plus
arm_3L 22862942..22863094 417..572 98   Plus

BO06049.5prime Sequence

578 bp (577 high quality bases) assembled on 2005-12-02

> BO06049.5prime
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCGCAAGCTTTCTAGACC

BO06049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8385-PA 549 Arf79F-RA 1..546 17..562 2730 100 Plus
CG8385-PD 549 Arf79F-RD 1..546 17..562 2730 100 Plus
CG8385-PB 549 Arf79F-RB 1..546 17..562 2730 100 Plus
CG8385-PE 549 Arf79F-RE 1..546 17..562 2730 100 Plus
CG8385-PC 549 Arf79F-RC 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 1464 CG8385-RJ 341..887 16..562 2735 100 Plus
Arf79F-RI 1459 CG8385-RI 336..882 16..562 2735 100 Plus
Arf79F-RH 1456 CG8385-RH 205..751 16..562 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22869085..22869248 562..399 820 100 Minus
3L 28110227 3L 22869840..22869990 166..16 755 100 Minus
3L 28110227 3L 22869345..22869475 401..271 640 99.2 Minus
3L 28110227 3L 22869664..22869775 275..164 560 100 Minus
4 1348131 4 1124441..1124667 89..315 505 81.5 Plus
2R 25286936 2R 15323847..15324028 113..294 235 75.3 Plus
Blast to na_te.dros performed on 2015-02-10 15:06:08 has no hits.

BO06049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:27 Download gff for BO06049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PE 1..549 17..566 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:46 Download gff for BO06049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8385-PC 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:43 Download gff for BO06049.5prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..756 9..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:46 Download gff for BO06049.5prime
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 198..756 9..570 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:46 Download gff for BO06049.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22869080..22869246 401..570 97 <- Minus
3L 22869346..22869471 275..400 100 <- Minus
3L 22869665..22869774 165..274 100 <- Minus
3L 22869842..22869994 9..164 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:43 Download gff for BO06049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22862180..22862346 401..570 97 <- Minus
arm_3L 22862446..22862571 275..400 100 <- Minus
arm_3L 22862765..22862874 165..274 100 <- Minus
arm_3L 22862942..22863094 9..164 98   Minus

BO06049.complete Sequence

580 bp (580 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630253

> BO06049.complete
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCGCAAGCTTTCTAGACCAT

BO06049.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 549 CG8385-PJ 1..546 17..562 2730 100 Plus
Arf79F-RI 549 CG8385-PI 1..546 17..562 2730 100 Plus
Arf79F-RH 549 CG8385-PH 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-RJ 1464 CG8385-RJ 341..887 16..562 2735 100 Plus
Arf79F-RI 1459 CG8385-RI 336..882 16..562 2735 100 Plus
Arf79F-RH 1456 CG8385-RH 205..751 16..562 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22869085..22869248 562..399 820 100 Minus
3L 28110227 3L 22869840..22869990 166..16 755 100 Minus
3L 28110227 3L 22869345..22869475 401..271 640 99.2 Minus
3L 28110227 3L 22869664..22869775 275..164 560 100 Minus
4 1348131 4 1124441..1124667 89..315 505 81.5 Plus
2R 25286936 2R 15323847..15324028 113..294 235 75.3 Plus
Blast to na_te.dros performed on 2014-11-27 02:06:22 has no hits.

BO06049.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:23 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RE 1..549 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:37 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 203..761 9..570 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:26 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 206..751 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:23 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RE 394..952 9..570 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:28 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
Arf79F-RH 206..751 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:28 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22869346..22869471 275..400 100 <- Minus
3L 22869665..22869774 165..274 100 <- Minus
3L 22869842..22869989 17..164 100   Minus
3L 22869083..22869246 401..564 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:26 Download gff for BO06049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22862446..22862571 275..400 100 <- Minus
arm_3L 22862765..22862874 165..274 100 <- Minus
arm_3L 22862942..22863089 17..164 100   Minus
arm_3L 22862183..22862346 401..564 98 <- Minus

BO06049.pep Sequence

Translation from 16 to 580

> BO06049.pep
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI
GEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRN
RNWYIQATCATSGDGLYEGLDWLSNQLKNANRASFLDH

BO06049.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Arf79F-PJ 182 CG8385-PJ 1..182 1..182 946 100 Plus
Arf79F-PI 182 CG8385-PI 1..182 1..182 946 100 Plus
Arf79F-PH 182 CG8385-PH 1..182 1..182 946 100 Plus
Arf79F-PF 182 CG8385-PF 1..182 1..182 946 100 Plus
Arf79F-PC 182 CG8385-PC 1..182 1..182 946 100 Plus