Clone Sequence Records
BO06049.3prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-02
> BO06049.3prime
ATGGTCTAGAAAGCTTGCGCGATTAGCGTTCTTCAATTGGTTGGACAGCC
AGTCGAGTCCCTCGTACAGCCCATCACCGCTAGTTGCACACGTCGCCTGG
ATGTACCAGTTGCGGTTTCTGAGTGAGTGCAAGCCGAGCTTGTCGGTGAT
TTCGGCCGCGTTCATTGCATTTGGCAGATCCTGTTTGTTTGCGAAGATTA
GTAAGACTGCATCCCTCAGCTCGTCCTCTGCCAGCATGCGCATCAACTCC
TCTCTCGCCTCACCGATACGCTCTCGGTCATTGCTGTCCACGACGAAGAT
AAGACCTTGTGTATTCTGGAAGTAGTGCCTCCACAGGGGACGAATTTTGT
CTTGGCCACCCACATCCCACACTGTAAAGCTAATATTCTTGTATTCTACA
GTCTCCACATTGAAACCAATGGTAGGTATCGTTGTAACAATTTCGCCTAA
TTTGAGTTTGTACAGAATTGTGGTTTTACCAGCGGCATCCAAACCGACCA
TCAATATCCTCATTTCCTTTTTGCCGAATAGGCCTTTGAATAAGTTCGCG
AATACGTTTCCCATGTCGACTGATAACT
BO06049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8385-PA | 549 | Arf79F-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
CG8385-PD | 549 | Arf79F-RD | 1..546 | 564..19 | 2730 | 100 | Minus |
CG8385-PB | 549 | Arf79F-RB | 1..546 | 564..19 | 2730 | 100 | Minus |
CG8385-PE | 549 | Arf79F-RE | 1..546 | 564..19 | 2730 | 100 | Minus |
CG8385-PC | 549 | Arf79F-RC | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 1464 | CG8385-RJ | 341..887 | 565..19 | 2735 | 100 | Minus |
Arf79F-RI | 1459 | CG8385-RI | 336..882 | 565..19 | 2735 | 100 | Minus |
Arf79F-RH | 1456 | CG8385-RH | 205..751 | 565..19 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22869085..22869248 | 19..182 | 820 | 100 | Plus |
3L | 28110227 | 3L | 22869840..22869990 | 415..565 | 755 | 100 | Plus |
3L | 28110227 | 3L | 22869345..22869475 | 180..310 | 640 | 99.2 | Plus |
3L | 28110227 | 3L | 22869664..22869775 | 306..417 | 560 | 100 | Plus |
4 | 1348131 | 4 | 1124441..1124667 | 492..266 | 505 | 81.5 | Minus |
2R | 25286936 | 2R | 15323847..15324028 | 468..287 | 235 | 75.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:01:08 has no hits.
BO06049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:26 Download gff for
BO06049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PE | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:44 Download gff for
BO06049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PC | 1..549 | 15..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:14 Download gff for
BO06049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..756 | 11..572 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:57 Download gff for
BO06049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..756 | 11..572 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:57 Download gff for
BO06049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22869080..22869246 | 11..180 | 97 | <- | Plus |
3L | 22869346..22869471 | 181..306 | 100 | <- | Plus |
3L | 22869665..22869774 | 307..416 | 100 | <- | Plus |
3L | 22869842..22869994 | 417..572 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:14 Download gff for
BO06049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22862180..22862346 | 11..180 | 97 | <- | Plus |
arm_3L | 22862446..22862571 | 181..306 | 100 | <- | Plus |
arm_3L | 22862765..22862874 | 307..416 | 100 | <- | Plus |
arm_3L | 22862942..22863094 | 417..572 | 98 | | Plus |
BO06049.5prime Sequence
578 bp (577 high quality bases) assembled on 2005-12-02
> BO06049.5prime
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCGCAAGCTTTCTAGACC
BO06049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8385-PA | 549 | Arf79F-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG8385-PD | 549 | Arf79F-RD | 1..546 | 17..562 | 2730 | 100 | Plus |
CG8385-PB | 549 | Arf79F-RB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG8385-PE | 549 | Arf79F-RE | 1..546 | 17..562 | 2730 | 100 | Plus |
CG8385-PC | 549 | Arf79F-RC | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 1464 | CG8385-RJ | 341..887 | 16..562 | 2735 | 100 | Plus |
Arf79F-RI | 1459 | CG8385-RI | 336..882 | 16..562 | 2735 | 100 | Plus |
Arf79F-RH | 1456 | CG8385-RH | 205..751 | 16..562 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22869085..22869248 | 562..399 | 820 | 100 | Minus |
3L | 28110227 | 3L | 22869840..22869990 | 166..16 | 755 | 100 | Minus |
3L | 28110227 | 3L | 22869345..22869475 | 401..271 | 640 | 99.2 | Minus |
3L | 28110227 | 3L | 22869664..22869775 | 275..164 | 560 | 100 | Minus |
4 | 1348131 | 4 | 1124441..1124667 | 89..315 | 505 | 81.5 | Plus |
2R | 25286936 | 2R | 15323847..15324028 | 113..294 | 235 | 75.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:06:08 has no hits.
BO06049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:27 Download gff for
BO06049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PE | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:46 Download gff for
BO06049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8385-PC | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:43 Download gff for
BO06049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..756 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:46 Download gff for
BO06049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 198..756 | 9..570 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:46 Download gff for
BO06049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22869080..22869246 | 401..570 | 97 | <- | Minus |
3L | 22869346..22869471 | 275..400 | 100 | <- | Minus |
3L | 22869665..22869774 | 165..274 | 100 | <- | Minus |
3L | 22869842..22869994 | 9..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:43 Download gff for
BO06049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22862180..22862346 | 401..570 | 97 | <- | Minus |
arm_3L | 22862446..22862571 | 275..400 | 100 | <- | Minus |
arm_3L | 22862765..22862874 | 165..274 | 100 | <- | Minus |
arm_3L | 22862942..22863094 | 9..164 | 98 | | Minus |
BO06049.complete Sequence
580 bp (580 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630253
> BO06049.complete
GAAGTTATCAGTCGACATGGGAAACGTATTCGCGAACTTATTCAAAGGCC
TATTCGGCAAAAAGGAAATGAGGATATTGATGGTCGGTTTGGATGCCGCT
GGTAAAACCACAATTCTGTACAAACTCAAATTAGGCGAAATTGTTACAAC
GATACCTACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATTA
GCTTTACAGTGTGGGATGTGGGTGGCCAAGACAAAATTCGTCCCCTGTGG
AGGCACTACTTCCAGAATACACAAGGTCTTATCTTCGTCGTGGACAGCAA
TGACCGAGAGCGTATCGGTGAGGCGAGAGAGGAGTTGATGCGCATGCTGG
CAGAGGACGAGCTGAGGGATGCAGTCTTACTAATCTTCGCAAACAAACAG
GATCTGCCAAATGCAATGAACGCGGCCGAAATCACCGACAAGCTCGGCTT
GCACTCACTCAGAAACCGCAACTGGTACATCCAGGCGACGTGTGCAACTA
GCGGTGATGGGCTGTACGAGGGACTCGACTGGCTGTCCAACCAATTGAAG
AACGCTAATCGCGCAAGCTTTCTAGACCAT
BO06049.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 549 | CG8385-PJ | 1..546 | 17..562 | 2730 | 100 | Plus |
Arf79F-RI | 549 | CG8385-PI | 1..546 | 17..562 | 2730 | 100 | Plus |
Arf79F-RH | 549 | CG8385-PH | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-RJ | 1464 | CG8385-RJ | 341..887 | 16..562 | 2735 | 100 | Plus |
Arf79F-RI | 1459 | CG8385-RI | 336..882 | 16..562 | 2735 | 100 | Plus |
Arf79F-RH | 1456 | CG8385-RH | 205..751 | 16..562 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22869085..22869248 | 562..399 | 820 | 100 | Minus |
3L | 28110227 | 3L | 22869840..22869990 | 166..16 | 755 | 100 | Minus |
3L | 28110227 | 3L | 22869345..22869475 | 401..271 | 640 | 99.2 | Minus |
3L | 28110227 | 3L | 22869664..22869775 | 275..164 | 560 | 100 | Minus |
4 | 1348131 | 4 | 1124441..1124667 | 89..315 | 505 | 81.5 | Plus |
2R | 25286936 | 2R | 15323847..15324028 | 113..294 | 235 | 75.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:06:22 has no hits.
BO06049.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:23 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RE | 1..549 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:37 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 203..761 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:26 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 206..751 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:23 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RE | 394..952 | 9..570 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:28 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arf79F-RH | 206..751 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:28 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22869346..22869471 | 275..400 | 100 | <- | Minus |
3L | 22869665..22869774 | 165..274 | 100 | <- | Minus |
3L | 22869842..22869989 | 17..164 | 100 | | Minus |
3L | 22869083..22869246 | 401..564 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:26 Download gff for
BO06049.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22862446..22862571 | 275..400 | 100 | <- | Minus |
arm_3L | 22862765..22862874 | 165..274 | 100 | <- | Minus |
arm_3L | 22862942..22863089 | 17..164 | 100 | | Minus |
arm_3L | 22862183..22862346 | 401..564 | 98 | <- | Minus |
BO06049.pep Sequence
Translation from 16 to 580
> BO06049.pep
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG
FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERI
GEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRN
RNWYIQATCATSGDGLYEGLDWLSNQLKNANRASFLDH
BO06049.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arf79F-PJ | 182 | CG8385-PJ | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PI | 182 | CG8385-PI | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PH | 182 | CG8385-PH | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PF | 182 | CG8385-PF | 1..182 | 1..182 | 946 | 100 | Plus |
Arf79F-PC | 182 | CG8385-PC | 1..182 | 1..182 | 946 | 100 | Plus |