Clone Sequence Records
BO06050.3prime Sequence
878 bp (807 high quality bases) assembled on 2005-12-02
> BO06050.3prime
ATGGTCTAGAAAGCTTGCATCGCTACCAAGGATTCCGGTATCGATGTTGC
TCCAGCGCCCCGAACGCCGGTAACCGAACATGCTCTTCAGTATCTCCAGG
CCGGACTCCACAGTGGTGCGCACGTCGCGCTCGCTGCCTAGCTTTGGGTT
GATCTCCACCAGATCGACGCCCTGCACCCGCTTGGTGTCCCGGAGTGCCT
CCACGATGCTGATTCCCTCGCGGAGCGTGAGGCCACCGCGCACCGCGGTG
CCAGTGCTAGGCGCCACATTGCTGTCCAAGGCGTCGATGTCAAAGCTGAC
GTGGATCTTGTTCTGCGGATTAAGGGCGTCCAGCGTCATCTCGATAATCT
TGGGCACGCCCACCCGGTCGATGGTATCCATTGCATAGTAGCGTATTCCG
ACTTTGTTTAGGATGAACGCCTCGTAGGGGTCAATGTCCCGGAGTCCGAT
GTAAACCAGCTGATCCTTGGGCAAGCAGTTGGGCGCGATTTCCTGGAGGC
CAGCGTGCTGCCAGGTGTTACGGAGCTGTTCCAACAGAAAGGATACAGGC
ATCCCATGGATGTTGCCCGACTGCGAGGTGCTATGCAGATTGATGTCCGC
ATGTGCGTCGATCCACACCAGGGACAAATTCGGCGTGTGTTGCAGGTGCC
CGGCCACGGATCCGAAGCCGATCGCATGATCACCACCAATGGCTAAAAAC
TGCGTGTTCTCCACGAGCATGAGTTTCACCTGTTCAATCAGTGCCCGATT
GCAGGCCATGAAGTCCGCGTAGTTTCGGATGTGGTGATAGTGCACACGCT
GCTGCTGGAGAGGGGGCTCGTCTACGGCGTACTGCAGATTTCCGTAGTCC
CGTATCACCAGGCCATCATGACTGCTCT
BO06050.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18104-PA | 1056 | arg-RA | 194..1053 | 878..19 | 4275 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 271..1130 | 878..19 | 4285 | 99.9 | Minus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 662..867 | 1015 | 99.5 | Plus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 476..663 | 940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 527559..527915 | 375..19 | 1785 | 100 | Minus |
X | 23542271 | X | 509909..510114 | 867..662 | 1015 | 99.5 | Minus |
X | 23542271 | X | 510174..510361 | 663..476 | 940 | 100 | Minus |
X | 23542271 | X | 526501..526601 | 476..376 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:26:08 has no hits.
BO06050.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:38:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:47 Download gff for
BO06050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18104-PA | 194..1056 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:55 Download gff for
BO06050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 288..1152 | 14..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:06 Download gff for
BO06050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 271..1135 | 14..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:06 Download gff for
BO06050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 509907..510113 | 663..870 | 99 | -> | Minus |
X | 510175..510361 | 476..662 | 100 | -> | Minus |
X | 526502..526601 | 376..475 | 100 | -> | Minus |
X | 527559..527920 | 14..375 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:55 Download gff for
BO06050.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403940..404146 | 663..870 | 99 | -> | Minus |
arm_X | 404208..404394 | 476..662 | 100 | -> | Minus |
arm_X | 420535..420634 | 376..475 | 100 | -> | Minus |
arm_X | 421592..421953 | 14..375 | 99 | | Minus |
BO06050.5prime Sequence
897 bp (772 high quality bases) assembled on 2005-12-02
> BO06050.5prime
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACCATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCG
BO06050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18104-PA | 1056 | arg-RA | 1..881 | 17..897 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 78..958 | 17..897 | 4405 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 426..221 | 1030 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 10025..10229 | 221..17 | 1025 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 612..425 | 940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 509909..510114 | 221..426 | 1030 | 100 | Plus |
X | 23542271 | X | 509512..509716 | 17..221 | 1025 | 100 | Plus |
X | 23542271 | X | 510174..510361 | 425..612 | 940 | 100 | Plus |
X | 23542271 | X | 527559..527743 | 713..897 | 925 | 100 | Plus |
X | 23542271 | X | 526501..526601 | 612..712 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 19:02:52 has no hits.
BO06050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:38:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:48 Download gff for
BO06050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18104-PA | 1..881 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:06 Download gff for
BO06050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..975 | 17..897 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:54 Download gff for
BO06050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 78..958 | 17..897 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:54 Download gff for
BO06050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 509512..509716 | 17..221 | 100 | -> | Plus |
X | 509910..510113 | 222..425 | 100 | -> | Plus |
X | 510175..510361 | 426..612 | 100 | -> | Plus |
X | 526502..526601 | 613..712 | 100 | -> | Plus |
X | 527559..527743 | 713..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:06 Download gff for
BO06050.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403545..403749 | 17..221 | 100 | -> | Plus |
arm_X | 403943..404146 | 222..425 | 100 | -> | Plus |
arm_X | 404208..404394 | 426..612 | 100 | -> | Plus |
arm_X | 420535..420634 | 613..712 | 100 | -> | Plus |
arm_X | 421592..421776 | 713..897 | 100 | | Plus |
BO06050.complete Sequence
1087 bp (1087 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ638633
> BO06050.complete
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACCATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGA
CACCAAGCGGGTGCAGGGCGTCGATCTGGTGGAGATCAACCCAAAGCTAG
GCAGCGAGCGCGACGTGCGCACCACTGTGGAGTCCGGCCTGGAGATACTG
AAGAGCATGTTCGGTTACCGGCGTTCGGGGCGCTGGAGCAACATCGATAC
CGGAATCCTTGGTAGCGATGCAAGCTTTCTAGACCAT
BO06050.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1056 | CG18104-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-RA | 1243 | CG18104-RA | 78..1130 | 17..1069 | 5265 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 9627..9832 | 426..221 | 1030 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 10025..10229 | 221..17 | 1025 | 100 | Minus |
elav-RD | 10506 | CG4262-RD | 9380..9567 | 612..425 | 940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 527559..527915 | 713..1069 | 1785 | 100 | Plus |
X | 23542271 | X | 509909..510114 | 221..426 | 1030 | 100 | Plus |
X | 23542271 | X | 509512..509716 | 17..221 | 1025 | 100 | Plus |
X | 23542271 | X | 510174..510361 | 425..612 | 940 | 100 | Plus |
X | 23542271 | X | 526501..526601 | 612..712 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:34:45 has no hits.
BO06050.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:29 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 1..1056 | 17..1073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:19 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1147 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:05 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1147 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:29 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 95..1152 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:52 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arg-RA | 78..1130 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:52 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 526502..526601 | 613..712 | 100 | -> | Plus |
X | 509512..509716 | 17..221 | 100 | -> | Plus |
X | 509910..510113 | 222..425 | 100 | -> | Plus |
X | 510175..510361 | 426..612 | 100 | -> | Plus |
X | 527559..527915 | 713..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:05 Download gff for
BO06050.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 403943..404146 | 222..425 | 100 | -> | Plus |
arm_X | 404208..404394 | 426..612 | 100 | -> | Plus |
arm_X | 420535..420634 | 613..712 | 100 | -> | Plus |
arm_X | 403545..403749 | 17..221 | 100 | -> | Plus |
arm_X | 421592..421948 | 713..1071 | 99 | | Plus |
BO06050.pep Sequence
Translation from 16 to 1087
> BO06050.pep
MWWSRKFASRSLRLHRLKSTGSTAPREPEQSLGIIGVPFAKGQAKQGVEL
APDLLRQSSLRQVLQSSHDGLVIRDYGNLQYAVDEPLLQQQRVHYHHIRN
YADFMACNRALIEQVKLMLVENTQFLAIGGDHAIGFGSVAGHLQHTPNLS
LVWIDAHADINLHSTSQSGNIHGMPVSFLLEQLRNTWQHAGLQEIAPNCL
PKDQLVYIGLRDIDPYEAFILNKVGIRYYAMDTIDRVGVPKIIEMTLDAL
NPQNKIHVSFDIDALDSNVAPSTGTAVRGGLTLREGISIVEALRDTKRVQ
GVDLVEINPKLGSERDVRTTVESGLEILKSMFGYRRSGRWSNIDTGILGS
DASFLDH
BO06050.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
arg-PA | 351 | CG18104-PA | 1..351 | 1..351 | 1814 | 100 | Plus |