Clone BO06050 Report

Search the DGRC for BO06050

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptarg-RA
Protein status:BO06050.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO06050.3prime Sequence

878 bp (807 high quality bases) assembled on 2005-12-02

> BO06050.3prime
ATGGTCTAGAAAGCTTGCATCGCTACCAAGGATTCCGGTATCGATGTTGC
TCCAGCGCCCCGAACGCCGGTAACCGAACATGCTCTTCAGTATCTCCAGG
CCGGACTCCACAGTGGTGCGCACGTCGCGCTCGCTGCCTAGCTTTGGGTT
GATCTCCACCAGATCGACGCCCTGCACCCGCTTGGTGTCCCGGAGTGCCT
CCACGATGCTGATTCCCTCGCGGAGCGTGAGGCCACCGCGCACCGCGGTG
CCAGTGCTAGGCGCCACATTGCTGTCCAAGGCGTCGATGTCAAAGCTGAC
GTGGATCTTGTTCTGCGGATTAAGGGCGTCCAGCGTCATCTCGATAATCT
TGGGCACGCCCACCCGGTCGATGGTATCCATTGCATAGTAGCGTATTCCG
ACTTTGTTTAGGATGAACGCCTCGTAGGGGTCAATGTCCCGGAGTCCGAT
GTAAACCAGCTGATCCTTGGGCAAGCAGTTGGGCGCGATTTCCTGGAGGC
CAGCGTGCTGCCAGGTGTTACGGAGCTGTTCCAACAGAAAGGATACAGGC
ATCCCATGGATGTTGCCCGACTGCGAGGTGCTATGCAGATTGATGTCCGC
ATGTGCGTCGATCCACACCAGGGACAAATTCGGCGTGTGTTGCAGGTGCC
CGGCCACGGATCCGAAGCCGATCGCATGATCACCACCAATGGCTAAAAAC
TGCGTGTTCTCCACGAGCATGAGTTTCACCTGTTCAATCAGTGCCCGATT
GCAGGCCATGAAGTCCGCGTAGTTTCGGATGTGGTGATAGTGCACACGCT
GCTGCTGGAGAGGGGGCTCGTCTACGGCGTACTGCAGATTTCCGTAGTCC
CGTATCACCAGGCCATCATGACTGCTCT

BO06050.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18104-PA 1056 arg-RA 194..1053 878..19 4275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 271..1130 878..19 4285 99.9 Minus
elav-RD 10506 CG4262-RD 9627..9832 662..867 1015 99.5 Plus
elav-RD 10506 CG4262-RD 9380..9567 476..663 940 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 527559..527915 375..19 1785 100 Minus
X 23542271 X 509909..510114 867..662 1015 99.5 Minus
X 23542271 X 510174..510361 663..476 940 100 Minus
X 23542271 X 526501..526601 476..376 505 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:26:08 has no hits.

BO06050.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:38:28 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:47 Download gff for BO06050.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18104-PA 194..1056 15..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:55 Download gff for BO06050.3prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 288..1152 14..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:06 Download gff for BO06050.3prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 271..1135 14..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:06 Download gff for BO06050.3prime
Subject Subject Range Query Range Percent Splice Strand
X 509907..510113 663..870 99 -> Minus
X 510175..510361 476..662 100 -> Minus
X 526502..526601 376..475 100 -> Minus
X 527559..527920 14..375 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:55 Download gff for BO06050.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 403940..404146 663..870 99 -> Minus
arm_X 404208..404394 476..662 100 -> Minus
arm_X 420535..420634 376..475 100 -> Minus
arm_X 421592..421953 14..375 99   Minus

BO06050.5prime Sequence

897 bp (772 high quality bases) assembled on 2005-12-02

> BO06050.5prime
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACCATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCG

BO06050.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG18104-PA 1056 arg-RA 1..881 17..897 4405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 78..958 17..897 4405 100 Plus
elav-RD 10506 CG4262-RD 9627..9832 426..221 1030 100 Minus
elav-RD 10506 CG4262-RD 10025..10229 221..17 1025 100 Minus
elav-RD 10506 CG4262-RD 9380..9567 612..425 940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 509909..510114 221..426 1030 100 Plus
X 23542271 X 509512..509716 17..221 1025 100 Plus
X 23542271 X 510174..510361 425..612 940 100 Plus
X 23542271 X 527559..527743 713..897 925 100 Plus
X 23542271 X 526501..526601 612..712 505 100 Plus
Blast to na_te.dros performed on 2015-02-09 19:02:52 has no hits.

BO06050.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:38:29 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:48 Download gff for BO06050.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18104-PA 1..881 17..897 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:06 Download gff for BO06050.5prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..975 17..897 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:54 Download gff for BO06050.5prime
Subject Subject Range Query Range Percent Splice Strand
arg-RA 78..958 17..897 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:54 Download gff for BO06050.5prime
Subject Subject Range Query Range Percent Splice Strand
X 509512..509716 17..221 100 -> Plus
X 509910..510113 222..425 100 -> Plus
X 510175..510361 426..612 100 -> Plus
X 526502..526601 613..712 100 -> Plus
X 527559..527743 713..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:06 Download gff for BO06050.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 403545..403749 17..221 100 -> Plus
arm_X 403943..404146 222..425 100 -> Plus
arm_X 404208..404394 426..612 100 -> Plus
arm_X 420535..420634 613..712 100 -> Plus
arm_X 421592..421776 713..897 100   Plus

BO06050.complete Sequence

1087 bp (1087 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ638633

> BO06050.complete
GAAGTTATCAGTCGACATGTGGTGGAGCCGTAAATTTGCCTCAAGGTCTC
TCCGCCTCCACCGGCTCAAGAGCACCGGAAGCACTGCGCCCAGGGAACCT
GAGCAATCTCTAGGCATCATTGGAGTGCCCTTCGCAAAGGGGCAGGCCAA
GCAGGGCGTGGAACTGGCGCCAGATCTTCTCCGGCAGAGCAGTCTGCGTC
AGGTGCTTCAGAGCAGTCATGATGGCCTGGTGATACGGGACTACGGAAAT
CTGCAGTACGCCGTAGACGAGCCCCTTCTCCAGCAGCAGCGTGTGCACTA
TCACCACATCCGAAACTACGCGGACTTCATGGCCTGCAATCGGGCACTGA
TTGAACAGGTGAAACTCATGCTCGTGGAGAACACGCAGTTTTTAGCCATT
GGTGGTGATCATGCGATCGGCTTCGGATCCGTGGCCGGGCACCTGCAACA
CACGCCGAATTTGTCCCTGGTGTGGATCGACGCACATGCGGACATCAATC
TGCATAGCACCTCGCAGTCGGGCAACATCCATGGGATGCCTGTATCCTTT
CTGTTGGAACAGCTCCGTAACACCTGGCAGCACGCTGGCCTCCAGGAAAT
CGCGCCCAACTGCTTGCCCAAGGATCAGCTGGTTTACATCGGACTCCGGG
ACATTGACCCCTACGAGGCGTTCATCCTAAACAAAGTCGGAATACGCTAC
TATGCAATGGATACCATCGACCGGGTGGGCGTGCCCAAGATTATCGAGAT
GACGCTGGACGCCCTTAATCCGCAGAACAAGATCCACGTCAGCTTTGACA
TCGACGCCTTGGACAGCAATGTGGCGCCTAGCACTGGCACCGCGGTGCGC
GGTGGCCTCACGCTCCGCGAGGGAATCAGCATCGTGGAGGCACTCCGGGA
CACCAAGCGGGTGCAGGGCGTCGATCTGGTGGAGATCAACCCAAAGCTAG
GCAGCGAGCGCGACGTGCGCACCACTGTGGAGTCCGGCCTGGAGATACTG
AAGAGCATGTTCGGTTACCGGCGTTCGGGGCGCTGGAGCAACATCGATAC
CGGAATCCTTGGTAGCGATGCAAGCTTTCTAGACCAT

BO06050.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1056 CG18104-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
arg-RA 1243 CG18104-RA 78..1130 17..1069 5265 100 Plus
elav-RD 10506 CG4262-RD 9627..9832 426..221 1030 100 Minus
elav-RD 10506 CG4262-RD 10025..10229 221..17 1025 100 Minus
elav-RD 10506 CG4262-RD 9380..9567 612..425 940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 527559..527915 713..1069 1785 100 Plus
X 23542271 X 509909..510114 221..426 1030 100 Plus
X 23542271 X 509512..509716 17..221 1025 100 Plus
X 23542271 X 510174..510361 425..612 940 100 Plus
X 23542271 X 526501..526601 612..712 505 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:34:45 has no hits.

BO06050.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:29 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 1..1056 17..1073 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:19 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1147 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:05 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1147 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:29 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 95..1152 17..1074 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:52 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
arg-RA 78..1130 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:52 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
X 526502..526601 613..712 100 -> Plus
X 509512..509716 17..221 100 -> Plus
X 509910..510113 222..425 100 -> Plus
X 510175..510361 426..612 100 -> Plus
X 527559..527915 713..1071 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:05 Download gff for BO06050.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 403943..404146 222..425 100 -> Plus
arm_X 404208..404394 426..612 100 -> Plus
arm_X 420535..420634 613..712 100 -> Plus
arm_X 403545..403749 17..221 100 -> Plus
arm_X 421592..421948 713..1071 99   Plus

BO06050.pep Sequence

Translation from 16 to 1087

> BO06050.pep
MWWSRKFASRSLRLHRLKSTGSTAPREPEQSLGIIGVPFAKGQAKQGVEL
APDLLRQSSLRQVLQSSHDGLVIRDYGNLQYAVDEPLLQQQRVHYHHIRN
YADFMACNRALIEQVKLMLVENTQFLAIGGDHAIGFGSVAGHLQHTPNLS
LVWIDAHADINLHSTSQSGNIHGMPVSFLLEQLRNTWQHAGLQEIAPNCL
PKDQLVYIGLRDIDPYEAFILNKVGIRYYAMDTIDRVGVPKIIEMTLDAL
NPQNKIHVSFDIDALDSNVAPSTGTAVRGGLTLREGISIVEALRDTKRVQ
GVDLVEINPKLGSERDVRTTVESGLEILKSMFGYRRSGRWSNIDTGILGS
DASFLDH

BO06050.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
arg-PA 351 CG18104-PA 1..351 1..351 1814 100 Plus