Clone Sequence Records
BO06052.3prime Sequence
812 bp (761 high quality bases) assembled on 2005-12-02
> BO06052.3prime
ATGGTCTAGAAAGCTTGCCCAGACAACTGCGCCGTCGGAGATCTTTTTGT
GGAAGTCGTAGAGACTGGGGAAGACATGATCTCGATCGATGTCCTCGCCG
TATTTCTTGACCAGATATGCGTAGCTCTTCTCGTGCACCAGCGCCGAGTG
CCAGCCCAGTTCCTTGGCGGCCAGATAATCAGTGGTGGGACCATCCCCAA
TGTGAAGGCACTCCTCCGGCTTGAGGTTCTTCAGACCCGACTTCTCCATT
GCCTTTTGAAAGATTTGGGGGTCGGGCTTCTCGGCCTGCACCTCGTACGA
GTTAATTGCAAAGTCCAGGTACTGATCCAGCTTGGTGTTCTGCAGCAGAG
TCGGCAGCCGAGGATCGAAGTTGGCTATCACACCCAGCTTGCACTTCTCC
GGCTTCAACTCCTTGCGGAGCTGCTGAAGGAGTTCCACGCTGCCGTTGCA
TGGCTGCCAGCAAATGGAGGTTTTGTATAGCTCAATTAGGTGGTTGGAGA
AGTTGTGCAGCTTCTCGTCGGGAATGGCCGCTCCACTCTCCGCAAAAGTT
CCTGCTATCAGCTTACGCCACCATTGCTGCCATTCCATCTGGGGATTCGT
GTCGCGCCCAAAGTTGGGATAATCGCGGTTCATCTTGTACCAGTTGGCCT
TGAAGTTCTTGGCCAGCTCGTTGTTGTCGCATCGGGCTCCGAACAGGGCT
CCAATCTCGCCGTACTGCTTGCCGGGAGTGGTTCGGAATTGGAGCAGAGT
GTTGGTCACATCGAAGGTTATGAGGCGAAAGCGGCTGAAGCTGCGCATGT
CGACTGATAACT
BO06052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3200-PA | 783 | Reg-2-RA | 1..780 | 798..19 | 3875 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..849 | 798..19 | 3885 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605199..605735 | 19..555 | 2685 | 100 | Plus |
3L | 28110227 | 3L | 606340..606500 | 638..798 | 790 | 99.4 | Plus |
3L | 28110227 | 3L | 606196..606286 | 551..641 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:53:56 has no hits.
BO06052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:32 Download gff for
BO06052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-PA | 1..783 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:53 Download gff for
BO06052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3200-PA | 1..783 | 16..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:57 Download gff for
BO06052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 56..849 | 19..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:17 Download gff for
BO06052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 56..849 | 19..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:17 Download gff for
BO06052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605199..605731 | 19..551 | 100 | <- | Plus |
3L | 606197..606285 | 552..640 | 100 | <- | Plus |
3L | 606343..606512 | 641..812 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:57 Download gff for
BO06052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605199..605731 | 19..551 | 100 | <- | Plus |
arm_3L | 606197..606285 | 552..640 | 100 | <- | Plus |
arm_3L | 606343..606512 | 641..812 | 96 | | Plus |
BO06052.5prime Sequence
812 bp (706 high quality bases) assembled on 2005-12-02
> BO06052.5prime
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGGCAA
GCTTTCTAGACC
BO06052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3200-PA | 783 | Reg-2-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..849 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605199..605735 | 796..260 | 2685 | 100 | Minus |
3L | 28110227 | 3L | 606340..606500 | 177..17 | 805 | 100 | Minus |
3L | 28110227 | 3L | 606196..606286 | 264..174 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:01:14 has no hits.
BO06052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:32 Download gff for
BO06052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:54 Download gff for
BO06052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3200-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:17 Download gff for
BO06052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 59..849 | 5..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:07 Download gff for
BO06052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 59..849 | 5..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:07 Download gff for
BO06052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605199..605731 | 264..796 | 100 | <- | Minus |
3L | 606197..606285 | 175..263 | 100 | <- | Minus |
3L | 606343..606511 | 5..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:17 Download gff for
BO06052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605199..605731 | 264..796 | 100 | <- | Minus |
arm_3L | 606197..606285 | 175..263 | 100 | <- | Minus |
arm_3L | 606343..606511 | 5..174 | 97 | | Minus |
BO06052.complete Sequence
814 bp (814 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630255
> BO06052.complete
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGGCAA
GCTTTCTAGACCAT
BO06052.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 783 | CG3200-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-RA | 883 | CG3200-RA | 70..849 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 605199..605735 | 796..260 | 2685 | 100 | Minus |
3L | 28110227 | 3L | 606340..606500 | 177..17 | 805 | 100 | Minus |
3L | 28110227 | 3L | 606196..606286 | 264..174 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:14 has no hits.
BO06052.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:31 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:00 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 48..838 | 5..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:37 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 70..849 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:31 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 48..838 | 5..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:44 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-2-RA | 70..849 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:44 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 605196..605731 | 264..798 | 99 | <- | Minus |
3L | 606197..606285 | 175..263 | 100 | <- | Minus |
3L | 606343..606500 | 17..174 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:37 Download gff for
BO06052.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 605196..605731 | 264..798 | 99 | <- | Minus |
arm_3L | 606197..606285 | 175..263 | 100 | <- | Minus |
arm_3L | 606343..606500 | 17..174 | 100 | | Minus |
BO06052.pep Sequence
Translation from 16 to 814
> BO06052.pep
MRSLSRFRLITFDVTNTLLQFRTTPGKQYGEIGALFGARCDNNELAKNFK
ANWYKMNRDYPNFGRDTNPQMEWQQWWRKLIAGTFAESGAAIPDEKLHNF
SNHLIELYKTSICWQPCNGSVELLQQLRKELKPEKCKLGVIANFDPRLPT
LLQNTKLDQYLDFAINSYEVQAEKPDPQIFQKAMEKSGLKNLKPEECLHI
GDGPTTDYLAAKELGWHSALVHEKSYAYLVKKYGEDIDRDHVFPSLYDFH
KKISDGAVVWASFLDH
BO06052.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-2-PA | 260 | CG3200-PA | 1..260 | 1..260 | 1412 | 100 | Plus |
CG15912-PA | 246 | CG15912-PA | 10..246 | 3..260 | 366 | 34 | Plus |