Clone BO06052 Report

Search the DGRC for BO06052

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptReg-2-RA
Protein status:BO06052.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO06052.3prime Sequence

812 bp (761 high quality bases) assembled on 2005-12-02

> BO06052.3prime
ATGGTCTAGAAAGCTTGCCCAGACAACTGCGCCGTCGGAGATCTTTTTGT
GGAAGTCGTAGAGACTGGGGAAGACATGATCTCGATCGATGTCCTCGCCG
TATTTCTTGACCAGATATGCGTAGCTCTTCTCGTGCACCAGCGCCGAGTG
CCAGCCCAGTTCCTTGGCGGCCAGATAATCAGTGGTGGGACCATCCCCAA
TGTGAAGGCACTCCTCCGGCTTGAGGTTCTTCAGACCCGACTTCTCCATT
GCCTTTTGAAAGATTTGGGGGTCGGGCTTCTCGGCCTGCACCTCGTACGA
GTTAATTGCAAAGTCCAGGTACTGATCCAGCTTGGTGTTCTGCAGCAGAG
TCGGCAGCCGAGGATCGAAGTTGGCTATCACACCCAGCTTGCACTTCTCC
GGCTTCAACTCCTTGCGGAGCTGCTGAAGGAGTTCCACGCTGCCGTTGCA
TGGCTGCCAGCAAATGGAGGTTTTGTATAGCTCAATTAGGTGGTTGGAGA
AGTTGTGCAGCTTCTCGTCGGGAATGGCCGCTCCACTCTCCGCAAAAGTT
CCTGCTATCAGCTTACGCCACCATTGCTGCCATTCCATCTGGGGATTCGT
GTCGCGCCCAAAGTTGGGATAATCGCGGTTCATCTTGTACCAGTTGGCCT
TGAAGTTCTTGGCCAGCTCGTTGTTGTCGCATCGGGCTCCGAACAGGGCT
CCAATCTCGCCGTACTGCTTGCCGGGAGTGGTTCGGAATTGGAGCAGAGT
GTTGGTCACATCGAAGGTTATGAGGCGAAAGCGGCTGAAGCTGCGCATGT
CGACTGATAACT

BO06052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3200-PA 783 Reg-2-RA 1..780 798..19 3875 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..849 798..19 3885 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605199..605735 19..555 2685 100 Plus
3L 28110227 3L 606340..606500 638..798 790 99.4 Plus
3L 28110227 3L 606196..606286 551..641 455 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:53:56 has no hits.

BO06052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:32 Download gff for BO06052.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-PA 1..783 16..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:53 Download gff for BO06052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3200-PA 1..783 16..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:57 Download gff for BO06052.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 56..849 19..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:17 Download gff for BO06052.3prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 56..849 19..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:17 Download gff for BO06052.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 605199..605731 19..551 100 <- Plus
3L 606197..606285 552..640 100 <- Plus
3L 606343..606512 641..812 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:57 Download gff for BO06052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605199..605731 19..551 100 <- Plus
arm_3L 606197..606285 552..640 100 <- Plus
arm_3L 606343..606512 641..812 96   Plus

BO06052.5prime Sequence

812 bp (706 high quality bases) assembled on 2005-12-02

> BO06052.5prime
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGGCAA
GCTTTCTAGACC

BO06052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3200-PA 783 Reg-2-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..849 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605199..605735 796..260 2685 100 Minus
3L 28110227 3L 606340..606500 177..17 805 100 Minus
3L 28110227 3L 606196..606286 264..174 455 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:01:14 has no hits.

BO06052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:32 Download gff for BO06052.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:54 Download gff for BO06052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3200-PA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:17 Download gff for BO06052.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 59..849 5..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:07 Download gff for BO06052.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 59..849 5..796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:07 Download gff for BO06052.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 605199..605731 264..796 100 <- Minus
3L 606197..606285 175..263 100 <- Minus
3L 606343..606511 5..174 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:17 Download gff for BO06052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605199..605731 264..796 100 <- Minus
arm_3L 606197..606285 175..263 100 <- Minus
arm_3L 606343..606511 5..174 97   Minus

BO06052.complete Sequence

814 bp (814 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630255

> BO06052.complete
GAAGTTATCAGTCGACATGCGCAGCCTCAGCCGCTTTCGCCTCATAACCT
TCGATGTGACCAACACTCTGCTCCAATTCCGAACCACTCCCGGCAAGCAG
TACGGCGAGATTGGAGCCCTGTTCGGAGCCCGATGCGACAACAACGAGCT
GGCCAAGAACTTCAAGGCCAACTGGTACAAGATGAACCGCGATTATCCCA
ACTTTGGGCGCGACACGAATCCCCAGATGGAATGGCAGCAATGGTGGCGT
AAGCTGATAGCAGGAACTTTTGCGGAGAGTGGAGCGGCCATTCCCGACGA
GAAGCTGCACAACTTCTCCAACCACCTAATTGAGCTATACAAAACCTCCA
TTTGCTGGCAGCCATGCAACGGCAGCGTGGAACTCCTTCAGCAGCTCCGC
AAGGAGTTGAAGCCGGAGAAGTGCAAGCTGGGTGTGATAGCCAACTTCGA
TCCTCGGCTGCCGACTCTGCTGCAGAACACCAAGCTGGATCAGTACCTGG
ACTTTGCAATTAACTCGTACGAGGTGCAGGCCGAGAAGCCCGACCCCCAA
ATCTTTCAAAAGGCAATGGAGAAGTCGGGTCTGAAGAACCTCAAGCCGGA
GGAGTGCCTTCACATTGGGGATGGTCCCACCACTGATTATCTGGCCGCCA
AGGAACTGGGCTGGCACTCGGCGCTGGTGCACGAGAAGAGCTACGCATAT
CTGGTCAAGAAATACGGCGAGGACATCGATCGAGATCATGTCTTCCCCAG
TCTCTACGACTTCCACAAAAAGATCTCCGACGGCGCAGTTGTCTGGGCAA
GCTTTCTAGACCAT

BO06052.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 783 CG3200-PA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-RA 883 CG3200-RA 70..849 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 605199..605735 796..260 2685 100 Minus
3L 28110227 3L 606340..606500 177..17 805 100 Minus
3L 28110227 3L 606196..606286 264..174 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:24:14 has no hits.

BO06052.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:31 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:53:00 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 48..838 5..796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:37 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 70..849 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:31 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 48..838 5..796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:44 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
Reg-2-RA 70..849 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:44 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
3L 605196..605731 264..798 99 <- Minus
3L 606197..606285 175..263 100 <- Minus
3L 606343..606500 17..174 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:37 Download gff for BO06052.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 605196..605731 264..798 99 <- Minus
arm_3L 606197..606285 175..263 100 <- Minus
arm_3L 606343..606500 17..174 100   Minus

BO06052.pep Sequence

Translation from 16 to 814

> BO06052.pep
MRSLSRFRLITFDVTNTLLQFRTTPGKQYGEIGALFGARCDNNELAKNFK
ANWYKMNRDYPNFGRDTNPQMEWQQWWRKLIAGTFAESGAAIPDEKLHNF
SNHLIELYKTSICWQPCNGSVELLQQLRKELKPEKCKLGVIANFDPRLPT
LLQNTKLDQYLDFAINSYEVQAEKPDPQIFQKAMEKSGLKNLKPEECLHI
GDGPTTDYLAAKELGWHSALVHEKSYAYLVKKYGEDIDRDHVFPSLYDFH
KKISDGAVVWASFLDH

BO06052.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-2-PA 260 CG3200-PA 1..260 1..260 1412 100 Plus
CG15912-PA 246 CG15912-PA 10..246 3..260 366 34 Plus