Clone Sequence Records
BO06053.3prime Sequence
841 bp (741 high quality bases) assembled on 2005-12-02
> BO06053.3prime
ATGGTCTAGAAAGCTTGCTAGGTTGCTTTTTCTCTTCCTCCGCTTGACAT
TCTCTGAATCCTCCACGGCCAACTTGAATTCCTTGACGACCTCGGGCAGC
GTCTCATCCGTCCCGTCCACCGTCCAGTTCTCCAGATGCGGTGGGCGGTG
GTGCAGAATGAAGGGATTAATGACGGCCGCCACACCCTGCGCATTGTTGA
GGTGAACGTGGTGGGTGCCCTGCACTTCGTGGAGCTCGAAGTGCGGGTTG
TTCTCCCTGAGGATGCCAATCACCTCGTCGCTCTGCTCGTCTATGTAGTT
CGACTCGGAGCCCTTGATCACGCAGTAGGGCACATTCTTGATGGTCCTGG
CCAGTTCAGCGGCGAAGGGAGGACTCGTATGGAACTCCGTGTAGTACTTG
CAGCGACCGTCGCGCGAGAAGAAGAACTTGGCCGGGAACTTGGTGGAACG
GCTGATGTTGCGCTCCAGGATGTGGCGGCAGTTCTCCAGCTCCACCGAGT
AGTCGGTGCCTTTGTACAGGACCTGCTCCATCTCTGTGTAGGTATAGGCC
GGCGGCTCCTGGCGCTTGGAATTCGCAAATCGCTCGTCCTCCACAATGTA
GCCCTCGATGTTCTTGCGCAGATAGTCGATCTGCGAGGGGGGCTTCCTAT
AGCGGGTCTTCACTATATCTATGCTGACCAACATGTCGGTGCGATGTGGG
TACAGCGAAGCGAATACGAAGCACAGCATGGCGCTCATTGAGTGGGCCAT
CAGGGACACCTTCTGCCAGCGGTACTCCTCCATTACGCGCAGGATCACGC
ACAGGTAGTCCACGAAGTGGTAGGCAATCCCCTCGGGCAGC
BO06053.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PA | 1074 | CG5707-RA | 249..1071 | 841..19 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RC | 1714 | CG5707-RC | 661..1483 | 841..19 | 4115 | 100 | Minus |
| CG5707-RB | 1477 | CG5707-RB | 424..1246 | 841..19 | 4115 | 100 | Minus |
| CG5707-RA | 1533 | CG5707-RA | 480..1302 | 841..19 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189391..2190213 | 19..841 | 4115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:28:16 has no hits.
BO06053.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:33 Download gff for
BO06053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 249..1074 | 18..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:56 Download gff for
BO06053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 249..1074 | 18..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:43 Download gff for
BO06053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 480..1310 | 8..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:03 Download gff for
BO06053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 480..1310 | 8..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:03 Download gff for
BO06053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189383..2190213 | 8..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:43 Download gff for
BO06053.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189383..2190213 | 8..841 | 99 | | Plus |
BO06053.5prime Sequence
787 bp (786 high quality bases) assembled on 2005-12-02
> BO06053.5prime
GAAGTTATCAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCA
TCGAGACGCATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGG
GGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCT
GGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGC
CCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCAC
GGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTA
CCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGT
CCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCG
CTGTACCCACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAGAC
CCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACATCG
AGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGGAG
CCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGCAC
CGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAACA
TCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACGGT
CGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCCGCTGA
ACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTG
BO06053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PA | 1074 | CG5707-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1533 | CG5707-RA | 232..1002 | 17..787 | 3855 | 100 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 464..1183 | 68..787 | 3600 | 100 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 227..946 | 68..787 | 3600 | 100 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 232..282 | 17..67 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189691..2190413 | 787..65 | 3615 | 100 | Minus |
| 3L | 28110227 | 3L | 2191939..2191990 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:51:57 has no hits.
BO06053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:35 Download gff for
BO06053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:06:57 Download gff for
BO06053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:48:54 Download gff for
BO06053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1002 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:24 Download gff for
BO06053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1002 | 17..787 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:24 Download gff for
BO06053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189691..2190410 | 68..787 | 100 | <- | Minus |
| 3L | 2191940..2191990 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:48:54 Download gff for
BO06053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189691..2190410 | 68..787 | 100 | <- | Minus |
| arm_3L | 2191940..2191990 | 17..67 | 100 | | Minus |
BO06053.complete Sequence
1105 bp (1105 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630256
> BO06053.complete
GAAGTTATCAGTCGACATGACATCGAATTCCGAAGGTCGAGGCAACCCCA
TCGAGACGCATGAACAGGAGCCCATGGACGTGCGCATCGACATGCCGTGG
GGTTATGTGGTGGGCAAGTGGTACGGCAATCGGCAGGTACGACCCATCCT
GGCGCTGCATGGCTGGCTGGACAACCTGGGCACGTGGGACAAATTGCTGC
CCCTGCTACCGAAGCACCTGGGAGTGCTGTGCATCGACCTGCCCGGCCAC
GGATACTCCTCGAAGCTGCCCGAGGGGATTGCCTACCACTTCGTGGACTA
CCTGTGCGTGATCCTGCGCGTAATGGAGGAGTACCGCTGGCAGAAGGTGT
CCCTGATGGCCCACTCAATGAGCGCCATGCTGTGCTTCGTATTCGCTTCG
CTGTACCCACATCGCACCGACATGTTGGTCAGCATAGATATAGTGAAGAC
CCGCTATAGGAAGCCCCCCTCGCAGATCGACTATCTGCGCAAGAACATCG
AGGGCTACATTGTGGAGGACGAGCGATTTGCGAATTCCAAGCGCCAGGAG
CCGCCGGCCTATACCTACACAGAGATGGAGCAGGTCCTGTACAAAGGCAC
CGACTACTCGGTGGAGCTGGAGAACTGCCGCCACATCCTGGAGCGCAACA
TCAGCCGTTCCACCAAGTTCCCGGCCAAGTTCTTCTTCTCGCGCGACGGT
CGCTGCAAGTACTACACGGAGTTCCATACGAGTCCTCCCTTCGCCGCTGA
ACTGGCCAGGACCATCAAGAATGTGCCCTACTGCGTGATCAAGGGCTCCG
AGTCGAACTACATAGACGAGCAGAGCGACGAGGTGATTGGCATCCTCAGG
GAGAACAACCCGCACTTCGAGCTCCACGAAGTGCAGGGCACCCACCACGT
TCACCTCAACAATGCGCAGGGTGTGGCGGCCGTCATTAATCCCTTCATTC
TGCACCACCGCCCACCGCATCTGGAGAACTGGACGGTGGACGGGACGGAT
GAGACGCTGCCCGAGGTCGTCAAGGAATTCAAGTTGGCCGTGGAGGATTC
AGAGAATGTCAAGCGGAGGAAGAGAAAAAGCAACCTAGCAAGCTTTCTAG
ACCAT
BO06053.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1074 | CG5707-PA | 1..1071 | 17..1087 | 5355 | 100 | Plus |
| CG5707-RC | 1086 | CG5707-PC | 64..1083 | 68..1087 | 5100 | 100 | Plus |
| CG5707-RB | 1086 | CG5707-PB | 64..1083 | 68..1087 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-RA | 1533 | CG5707-RA | 232..1302 | 17..1087 | 5355 | 100 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 464..1483 | 68..1087 | 5100 | 100 | Plus |
| CG5707-RB | 1477 | CG5707-RB | 227..1246 | 68..1087 | 5100 | 100 | Plus |
| CG5707-RC | 1714 | CG5707-RC | 232..282 | 17..67 | 255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2189391..2190413 | 1087..65 | 5115 | 100 | Minus |
| 3L | 28110227 | 3L | 2191939..2191990 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:24:15 has no hits.
BO06053.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:15 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 1..1074 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:35 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 191..1269 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:05 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1302 | 17..1089 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:15 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 191..1269 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:43 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5707-RA | 232..1302 | 17..1089 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:43 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2189387..2190410 | 68..1089 | 99 | <- | Minus |
| 3L | 2191940..2191990 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:05 Download gff for
BO06053.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2189387..2190410 | 68..1089 | 99 | <- | Minus |
| arm_3L | 2191940..2191990 | 17..67 | 100 | | Minus |
BO06053.pep Sequence
Translation from 16 to 1105
> BO06053.pep
MTSNSEGRGNPIETHEQEPMDVRIDMPWGYVVGKWYGNRQVRPILALHGW
LDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYLCVIL
RVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTRYRKP
PSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTDYSVE
LENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAELARTI
KNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVHLNNA
QGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSENVKR
RKRKSNLASFLDH
BO06053.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5707-PA | 357 | CG5707-PA | 1..357 | 1..357 | 1929 | 100 | Plus |
| CG5707-PC | 361 | CG5707-PC | 16..361 | 12..357 | 1841 | 98.6 | Plus |
| CG5707-PB | 361 | CG5707-PB | 16..361 | 12..357 | 1841 | 98.6 | Plus |
| CG15879-PA | 342 | CG15879-PA | 8..319 | 21..331 | 877 | 49.7 | Plus |
| CG5704-PB | 335 | CG5704-PB | 12..316 | 22..329 | 799 | 49.2 | Plus |
