Clone Sequence Records
BO06055.3prime Sequence
488 bp (487 high quality bases) assembled on 2005-12-02
> BO06055.3prime
ATGGTCTAGAAAGCTTGCCTCATTCCACTCTTCCTCGTTGCGTCCAAACT
TGTAGACCAAACTGGCGAACAGGATGAAGACGTTTTGCATCAGCAGAGCC
ACGCCAAACCAGCCATCCTTCTTTTCATTGTTGATGAAGTCGTCGATCAT
CACCCAGATGGCGGCAATGATGGAGGCAAAACCCATTAGGAAGCCCACAA
GCAGCCAGATCTTCGCTATCCTGGCGCCGGACTCCGATGAGTTCTCATCA
GAAATATGTTCTCCCTTCACTGCGTTCACCATGCAGAAGCTGATGGTCCC
GAAGATGCCGATGAAGACGTGTCCTGTGGTAATCTGGTGCTTGCCGTCGA
TGGACATGGCATCGATTAGAACCCACCATCCTGCGAAAAACAGAAGTCCG
GCTATTATGGAGGTGTTCCTGTTCCTGGACGCATCCCCCGTGAAATGCAA
CGCAATATTGTCCAACACGCCCATGTCGACTGATAACT
BO06055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-PB | 459 | CG15012-RB | 1..456 | 474..19 | 2280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 858 | CG15012-RC | 94..557 | 474..11 | 2290 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4291875..4292010 | 256..391 | 680 | 100 | Plus |
3L | 28110227 | 3L | 4291687..4291816 | 126..255 | 650 | 100 | Plus |
3L | 28110227 | 3L | 4291509..4291624 | 11..126 | 550 | 98.3 | Plus |
3L | 28110227 | 3L | 4292070..4292153 | 391..474 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:23:24 has no hits.
BO06055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:38 Download gff for
BO06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:02 Download gff for
BO06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 15..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:35:06 Download gff for
BO06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 11..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:38 Download gff for
BO06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 11..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:38 Download gff for
BO06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4291509..4291623 | 11..125 | 98 | <- | Plus |
3L | 4291687..4291816 | 126..255 | 100 | <- | Plus |
3L | 4291875..4292009 | 256..390 | 100 | <- | Plus |
3L | 4292070..4292153 | 391..474 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:35:06 Download gff for
BO06055.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4291509..4291623 | 11..125 | 98 | <- | Plus |
arm_3L | 4291687..4291816 | 126..255 | 100 | <- | Plus |
arm_3L | 4291875..4292009 | 256..390 | 100 | <- | Plus |
arm_3L | 4292070..4292153 | 391..474 | 100 | | Plus |
BO06055.5prime Sequence
488 bp (487 high quality bases) assembled on 2005-12-02
> BO06055.5prime
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGGCAAGCTTTCTAGACC
BO06055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-PB | 459 | CG15012-RB | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 858 | CG15012-RC | 94..557 | 17..480 | 2290 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4291875..4292010 | 235..100 | 680 | 100 | Minus |
3L | 28110227 | 3L | 4291687..4291816 | 365..236 | 650 | 100 | Minus |
3L | 28110227 | 3L | 4291509..4291624 | 480..365 | 550 | 98.3 | Minus |
3L | 28110227 | 3L | 4292070..4292153 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:03:05 has no hits.
BO06055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:39 Download gff for
BO06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:03 Download gff for
BO06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-PB | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:07 Download gff for
BO06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:56 Download gff for
BO06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..557 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:56 Download gff for
BO06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4292070..4292153 | 17..100 | 100 | | Minus |
3L | 4291509..4291623 | 366..480 | 98 | <- | Minus |
3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:07 Download gff for
BO06055.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
arm_3L | 4291509..4291623 | 366..480 | 98 | <- | Minus |
arm_3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
arm_3L | 4292070..4292153 | 17..100 | 100 | | Minus |
BO06055.complete Sequence
490 bp (490 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630257
> BO06055.complete
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGGCAAGCTTTCTAGACCAT
BO06055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 459 | CG15012-PC | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-RC | 858 | CG15012-RC | 94..557 | 17..480 | 2290 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4291875..4292010 | 235..100 | 680 | 100 | Minus |
3L | 28110227 | 3L | 4291687..4291816 | 365..236 | 650 | 100 | Minus |
3L | 28110227 | 3L | 4291509..4291624 | 480..365 | 550 | 98.3 | Minus |
3L | 28110227 | 3L | 4292070..4292153 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:30:19 has no hits.
BO06055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:44 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RB | 1..459 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:10 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RB | 237..700 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:36 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..549 | 17..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:44 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RB | 237..700 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:43 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15012-RC | 94..549 | 17..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:43 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
3L | 4292070..4292153 | 17..100 | 100 | | Minus |
3L | 4291515..4291623 | 366..474 | 98 | <- | Minus |
3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:36 Download gff for
BO06055.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4291515..4291623 | 366..474 | 98 | <- | Minus |
arm_3L | 4291687..4291816 | 236..365 | 100 | <- | Minus |
arm_3L | 4291875..4292009 | 101..235 | 100 | <- | Minus |
arm_3L | 4292070..4292153 | 17..100 | 100 | | Minus |
BO06055.pep Sequence
Translation from 16 to 490
> BO06055.pep
MGVLDNIALHFTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITT
GHVFIGIFGTISFCMVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFA
SIIAAIWVMIDDFINNEKKDGWFGVALLMQNVFILFASLVYKFGRNEEEW
NEASFLDH
BO06055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15012-PC | 152 | CG15012-PC | 1..152 | 1..152 | 797 | 100 | Plus |