Clone BO06055 Report

Search the DGRC for BO06055

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG15012-RB
Protein status:BO06055.pep: validated full length
Sequenced Size:490

Clone Sequence Records

BO06055.3prime Sequence

488 bp (487 high quality bases) assembled on 2005-12-02

> BO06055.3prime
ATGGTCTAGAAAGCTTGCCTCATTCCACTCTTCCTCGTTGCGTCCAAACT
TGTAGACCAAACTGGCGAACAGGATGAAGACGTTTTGCATCAGCAGAGCC
ACGCCAAACCAGCCATCCTTCTTTTCATTGTTGATGAAGTCGTCGATCAT
CACCCAGATGGCGGCAATGATGGAGGCAAAACCCATTAGGAAGCCCACAA
GCAGCCAGATCTTCGCTATCCTGGCGCCGGACTCCGATGAGTTCTCATCA
GAAATATGTTCTCCCTTCACTGCGTTCACCATGCAGAAGCTGATGGTCCC
GAAGATGCCGATGAAGACGTGTCCTGTGGTAATCTGGTGCTTGCCGTCGA
TGGACATGGCATCGATTAGAACCCACCATCCTGCGAAAAACAGAAGTCCG
GCTATTATGGAGGTGTTCCTGTTCCTGGACGCATCCCCCGTGAAATGCAA
CGCAATATTGTCCAACACGCCCATGTCGACTGATAACT

BO06055.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PB 459 CG15012-RB 1..456 474..19 2280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 858 CG15012-RC 94..557 474..11 2290 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291875..4292010 256..391 680 100 Plus
3L 28110227 3L 4291687..4291816 126..255 650 100 Plus
3L 28110227 3L 4291509..4291624 11..126 550 98.3 Plus
3L 28110227 3L 4292070..4292153 391..474 420 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:23:24 has no hits.

BO06055.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:38 Download gff for BO06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 15..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:02 Download gff for BO06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 15..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 06:35:06 Download gff for BO06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 11..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:38 Download gff for BO06055.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 11..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:38 Download gff for BO06055.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4291509..4291623 11..125 98 <- Plus
3L 4291687..4291816 126..255 100 <- Plus
3L 4291875..4292009 256..390 100 <- Plus
3L 4292070..4292153 391..474 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 06:35:06 Download gff for BO06055.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291509..4291623 11..125 98 <- Plus
arm_3L 4291687..4291816 126..255 100 <- Plus
arm_3L 4291875..4292009 256..390 100 <- Plus
arm_3L 4292070..4292153 391..474 100   Plus

BO06055.5prime Sequence

488 bp (487 high quality bases) assembled on 2005-12-02

> BO06055.5prime
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGGCAAGCTTTCTAGACC

BO06055.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PB 459 CG15012-RB 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 858 CG15012-RC 94..557 17..480 2290 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291875..4292010 235..100 680 100 Minus
3L 28110227 3L 4291687..4291816 365..236 650 100 Minus
3L 28110227 3L 4291509..4291624 480..365 550 98.3 Minus
3L 28110227 3L 4292070..4292153 100..17 420 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:03:05 has no hits.

BO06055.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:39 Download gff for BO06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:03 Download gff for BO06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-PB 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:07 Download gff for BO06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 17..480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:56 Download gff for BO06055.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..557 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:56 Download gff for BO06055.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4292070..4292153 17..100 100   Minus
3L 4291509..4291623 366..480 98 <- Minus
3L 4291687..4291816 236..365 100 <- Minus
3L 4291875..4292009 101..235 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:07 Download gff for BO06055.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291687..4291816 236..365 100 <- Minus
arm_3L 4291509..4291623 366..480 98 <- Minus
arm_3L 4291875..4292009 101..235 100 <- Minus
arm_3L 4292070..4292153 17..100 100   Minus

BO06055.complete Sequence

490 bp (490 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630257

> BO06055.complete
GAAGTTATCAGTCGACATGGGCGTGTTGGACAATATTGCGTTGCATTTCA
CGGGGGATGCGTCCAGGAACAGGAACACCTCCATAATAGCCGGACTTCTG
TTTTTCGCAGGATGGTGGGTTCTAATCGATGCCATGTCCATCGACGGCAA
GCACCAGATTACCACAGGACACGTCTTCATCGGCATCTTCGGGACCATCA
GCTTCTGCATGGTGAACGCAGTGAAGGGAGAACATATTTCTGATGAGAAC
TCATCGGAGTCCGGCGCCAGGATAGCGAAGATCTGGCTGCTTGTGGGCTT
CCTAATGGGTTTTGCCTCCATCATTGCCGCCATCTGGGTGATGATCGACG
ACTTCATCAACAATGAAAAGAAGGATGGCTGGTTTGGCGTGGCTCTGCTG
ATGCAAAACGTCTTCATCCTGTTCGCCAGTTTGGTCTACAAGTTTGGACG
CAACGAGGAAGAGTGGAATGAGGCAAGCTTTCTAGACCAT

BO06055.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 459 CG15012-PC 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-RC 858 CG15012-RC 94..557 17..480 2290 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4291875..4292010 235..100 680 100 Minus
3L 28110227 3L 4291687..4291816 365..236 650 100 Minus
3L 28110227 3L 4291509..4291624 480..365 550 98.3 Minus
3L 28110227 3L 4292070..4292153 100..17 420 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:30:19 has no hits.

BO06055.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:44 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 1..459 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:10 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 237..700 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:02:36 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..549 17..474 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:44 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RB 237..700 17..480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:20:43 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
CG15012-RC 94..549 17..474 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:20:43 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4291875..4292009 101..235 100 <- Minus
3L 4292070..4292153 17..100 100   Minus
3L 4291515..4291623 366..474 98 <- Minus
3L 4291687..4291816 236..365 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:02:36 Download gff for BO06055.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4291515..4291623 366..474 98 <- Minus
arm_3L 4291687..4291816 236..365 100 <- Minus
arm_3L 4291875..4292009 101..235 100 <- Minus
arm_3L 4292070..4292153 17..100 100   Minus

BO06055.pep Sequence

Translation from 16 to 490

> BO06055.pep
MGVLDNIALHFTGDASRNRNTSIIAGLLFFAGWWVLIDAMSIDGKHQITT
GHVFIGIFGTISFCMVNAVKGEHISDENSSESGARIAKIWLLVGFLMGFA
SIIAAIWVMIDDFINNEKKDGWFGVALLMQNVFILFASLVYKFGRNEEEW
NEASFLDH

BO06055.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15012-PC 152 CG15012-PC 1..152 1..152 797 100 Plus