Clone Sequence Records
BO06056.3prime Sequence
892 bp (850 high quality bases) assembled on 2005-12-02
> BO06056.3prime
ATGGTCTAGAAAGCTTGCAACGCTCGACCTCGACGCGCCCACGATGTAGC
CCTTGGCGGTGAGAACGCCCCGGCAGCGGACATGCACCTGGTAACGCAGT
GTCCAGTCGATTGTGTAGCCAGGGACCAGTCCGTCGAACTGCTCCACGGG
CAGCAGGAGCTCGGGATCGCTGTGCGTGTTCAGTTGGATGTCGTGAGCGG
TGCAGAACTCCTGCAGTTCTGGTGGCACCACGCAGCACGTAGACAGGTTG
ACCTGGGCAATTGTGGGCACAACCTGTGCGCTGTTGTGTAGCTCCTCCAG
CGCCGCCGCATCCAGATCGGCAATTCCCAGCTGTGTAATCTGCTGCTTGA
GGGCATATTGCTCCAGTGTTTTGTACAGTTCCTTCAGCTCTGCCACTCCT
TCCTTTCCATTGCGCTGGCTCCAGTTTGTAGCCCTGCTGACGTTGGAATC
CTCGGAACAGGGCGGTTTGGTTGTGGCCACCGGCGTTGCGGTGGCAACCG
CATTCGGGTGGTAGGCCAACACCACATTGTCCACGTGCGTCACACTAAGT
ATGTGGAGCAGCTCCTCCACCGCCTGATTCACAGACTCTGTGGAGTGGCG
ATTGAGGAATATCTTGGCACCGATACTTATCTCATTCCGTCCATTCTCCG
TCAAGCGGGTGGTCAACTCCTGGGTGGCCCTTTGCACCCGCCCATGCAGC
TCGTCGATCTCCTTTTCAACCACCACGCGCTCCGCAGTCGAGTCGGTGTG
GAGCGTTATCTTCAGGCCGTCGTACAGCTCCTCGTTCGATTTGCGCTGTC
CCAGTTCCGTGGCGATGATGTTGCCCGTGCTAATCACCACGTTCTGGTAC
TTCTTCGTTATGGTCGGTATCATGTCGACTGATAACTTCGTA
BO06056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4919-PA | 858 | Gclm-RA | 1..855 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 1505 | CG4919-RB | 160..1015 | 874..19 | 4280 | 100 | Minus |
| Gclm-RA | 1211 | CG4919-RA | 160..1015 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22685496..22686351 | 19..874 | 4280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:44:52 has no hits.
BO06056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:40 Download gff for
BO06056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-PA | 1..858 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:05 Download gff for
BO06056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4919-PA | 1..858 | 18..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:10 Download gff for
BO06056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1021 | 10..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:10 Download gff for
BO06056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1021 | 10..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:10 Download gff for
BO06056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22685489..22686356 | 10..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:10 Download gff for
BO06056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18511211..18512078 | 10..879 | 99 | | Plus |
BO06056.5prime Sequence
857 bp (827 high quality bases) assembled on 2005-12-02
> BO06056.5prime
GAAGTTATCAGTCGACATGATACCGACCATAACGAAGAAGTACCAGAACG
TGGTGATTAGCACGGGCAACATCATCGCCACGGAACTGGGACAGCGCAAA
TCGAACGAGGAGCTGTACGACGGCCTGAAGATAACGCTCCACACCGACTC
GACTGCGGAGCGCGTGGTGGTTGAAAAGGAGATCGACGAGCTGCATGGGC
GGGTGCAAAGGGCCACCCAGGAGTTGACCACCCGCTTGACGGAGAATGGA
CGGAATGAGATAAGTATCGGTGCCAAGATATTCCTCAATCGCCACTCCAC
AGAGTCTGTGAATCAGGCGGTGGAGGAGCTGCTCCACATACTTAGTGTGA
CGCACGTGGACAATGTGGTGTTGGCCTACCACCCGAATGCGGTTGCCACC
GCAACGCCGGTGGCCACAACCAAACCGCCCTGTTCCGAGGATTCCAACGT
CAGCAGGGCTACAAACTGGAGCCAGCGCAATGGAAAGGAAGGAGTGGCAG
AGCTGAAGGAACTGTACAAAACACTGGAGCAATATGCCCTCAAGCAGCAG
ATTACACAGCTGGGAATTGCCGATCTGGATGCGGCGGCGCTGGAGGAGCT
ACACAACAGCGCACAGGTTGTGCCCACAATTGCCCAGGTCAACCTGTCTA
CGTGCTGCGTGGTGCCACCAGAACTGCAGGAGTTCTGCACCGCTCACGAC
ATCCAACTGAACACGCACAGCGATCCCGAGCTCCTGCTGCCCGTGGAGCA
GTTCGACGGACTGGTCCCTGGCTACACAATCGACTGGACACTGCGTTACC
AGGTGCATGTCCGCTGCCGGGGCGTTCTCACCGCCAAGGGCTACATCGTG
GGCGCGT
BO06056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4919-PA | 858 | Gclm-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 1505 | CG4919-RB | 160..1001 | 16..857 | 4210 | 100 | Plus |
| Gclm-RA | 1211 | CG4919-RA | 160..1001 | 16..857 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22685510..22686351 | 857..16 | 4210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:45:29 has no hits.
BO06056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:41 Download gff for
BO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:06 Download gff for
BO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4919-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:15 Download gff for
BO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1001 | 11..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:39 Download gff for
BO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 155..1001 | 11..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:39 Download gff for
BO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22685510..22686356 | 11..857 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:15 Download gff for
BO06056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18511232..18512078 | 11..857 | 99 | | Minus |
BO06056.complete Sequence
889 bp (889 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630258
> BO06056.complete
GAAGTTATCAGTCGACATGATACCGACCATAACGAAGAAGTACCAGAACG
TGGTGATTAGCACGGGCAACATCATCGCCACGGAACTGGGACAGCGCAAA
TCGAACGAGGAGCTGTACGACGGCCTGAAGATAACGCTCCACACCGACTC
GACTGCGGAGCGCGTGGTGGTTGAAAAGGAGATCGACGAGCTGCATGGGC
GGGTGCAAAGGGCCACCCAGGAGTTGACCACCCGCTTGACGGAGAATGGA
CGGAATGAGATAAGTATCGGTGCCAAGATATTCCTCAATCGCCACTCCAC
AGAGTCTGTGAATCAGGCGGTGGAGGAGCTGCTCCACATACTTAGTGTGA
CGCACGTGGACAATGTGGTGTTGGCCTACCACCCGAATGCGGTTGCCACC
GCAACGCCGGTGGCCACAACCAAACCGCCCTGTTCCGAGGATTCCAACGT
CAGCAGGGCTACAAACTGGAGCCAGCGCAATGGAAAGGAAGGAGTGGCAG
AGCTGAAGGAACTGTACAAAACACTGGAGCAATATGCCCTCAAGCAGCAG
ATTACACAGCTGGGAATTGCCGATCTGGATGCGGCGGCGCTGGAGGAGCT
ACACAACAGCGCACAGGTTGTGCCCACAATTGCCCAGGTCAACCTGTCTA
CGTGCTGCGTGGTGCCACCAGAACTGCAGGAGTTCTGCACCGCTCACGAC
ATCCAACTGAACACGCACAGCGATCCCGAGCTCCTGCTGCCCGTGGAGCA
GTTCGACGGACTGGTCCCTGGCTACACAATCGACTGGACACTGCGTTACC
AGGTGCATGTCCGCTGCCGGGGCGTTCTCACCGCCAAGGGCTACATCGTG
GGCGCGTCGAGGTCGAGCGTTGCAAGCTTTCTAGACCAT
BO06056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 858 | CG4919-PB | 1..855 | 17..871 | 4275 | 100 | Plus |
| Gclm-RA | 858 | CG4919-PA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-RB | 1505 | CG4919-RB | 160..1015 | 16..871 | 4280 | 100 | Plus |
| Gclm-RA | 1211 | CG4919-RA | 160..1015 | 16..871 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22685496..22686351 | 871..16 | 4280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:28:26 has no hits.
BO06056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:16 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 1..858 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:37 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 172..1038 | 11..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:29:57 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 161..1015 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:16 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 172..1038 | 11..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:11 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclm-RA | 161..1015 | 17..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:11 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22685494..22686350 | 17..873 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:29:57 Download gff for
BO06056.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18511216..18512072 | 17..873 | 99 | | Minus |
BO06056.pep Sequence
Translation from 16 to 889
> BO06056.pep
MIPTITKKYQNVVISTGNIIATELGQRKSNEELYDGLKITLHTDSTAERV
VVEKEIDELHGRVQRATQELTTRLTENGRNEISIGAKIFLNRHSTESVNQ
AVEELLHILSVTHVDNVVLAYHPNAVATATPVATTKPPCSEDSNVSRATN
WSQRNGKEGVAELKELYKTLEQYALKQQITQLGIADLDAAALEELHNSAQ
VVPTIAQVNLSTCCVVPPELQEFCTAHDIQLNTHSDPELLLPVEQFDGLV
PGYTIDWTLRYQVHVRCRGVLTAKGYIVGASRSSVASFLDH
BO06056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclm-PB | 285 | CG4919-PB | 1..285 | 1..285 | 1455 | 100 | Plus |
| Gclm-PA | 285 | CG4919-PA | 1..285 | 1..285 | 1455 | 100 | Plus |
