Clone Sequence Records
BO06057.3prime Sequence
883 bp (776 high quality bases) assembled on 2005-12-02
> BO06057.3prime
ATGGTCTAGAAAGCTTGCAGCGGAAGCTGTGAGCAGGGCGGCATGGTAGG
CGATGTGTTCGGCGACGAACGTGGCGATGTAGAAGTAGCTGTGATCGTAT
CCCTCGCGCTGCTTGAAGATGGTCTGGATGTGATCATTGCCATCTGCGGC
AGCCAGCAGGTTCTCCGGCAGCAGCTGCTTGCCGGCCAGGAAGTTGTCTG
CTGCACCTTGGTCGATGAAGAGCTCCTGCGGAGTGCTCTCGTACTGCGAC
ACCAGATGCGTGGCATCCCACAGGGCCCAGTCATCCGGATTGGAGCCCAG
ATAGCCGGCAAAGGCCTTCTTGCCCCACGGGCACTCGGTGGGATTGGCAA
TCGGCGCAAAAGCGGACACCGACTGGTACAGCCCGGGATTCTTAAGCGCG
CAGATCAGGGCTCCGTGGCCGCCCATACTGTGGCCGAATATACCGCGTTT
ACCGGGAACCACGGGCAGATTGGCATTGACCACATCCACCAGCTCCTGGG
TCACATAGCTGTACATCTTGTAGTGCTTCGACCACGGCTCCTCCTTTGCA
TCCACATAGAATCCAGCCCCGCTTCCAAAGTCGTATGCATCATCTTGGCC
GGCAATTTCCACGCCCCTGGGCGAAGTGTCCGGATTGACGACGATCAGGT
TGTGGCGGGCGGCGTGCTGCTGGAATCCGCTCTTCTGGATGAAGTTCTCA
TGCGTGCAGGTCAGTCCGCTGAGGAAGAACAGCACCGGACACGGTTTACC
CTCCAAAGCGGCCGGCGGCAGGAAGACGCCAAAGGTCATGTCGCACTTCA
AGGTGTCCGAGCGATGGCGATACACGCGTTGCTCGCCCTCGAAGCACTTA
TTTGCGGACAGCTGTTCGAGCGTCATGTCGACT
BO06057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-PB | 993 | CG4390-RB | 131..990 | 878..19 | 4300 | 100 | Minus |
| CG4390-PA | 861 | CG4390-RA | 1..858 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:52:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RA | 1006 | CG4390-RA | 51..910 | 878..19 | 4300 | 100 | Minus |
| CG4390-RB | 1141 | CG4390-RB | 186..1045 | 878..19 | 4300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056514..20057373 | 19..878 | 4300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:52:00 has no hits.
BO06057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:42 Download gff for
BO06057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-PB | 128..993 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:08 Download gff for
BO06057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-PB | 128..993 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:36 Download gff for
BO06057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 198..1060 | 19..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:17 Download gff for
BO06057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 183..1045 | 19..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:17 Download gff for
BO06057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056514..20057376 | 19..883 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:36 Download gff for
BO06057.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882236..15883098 | 19..883 | 99 | | Plus |
BO06057.5prime Sequence
890 bp (787 high quality bases) assembled on 2005-12-02
> BO06057.5prime
GAAGTTATCAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCT
TCGAGGGCGAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGC
GACATGACCTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACC
GTGTCCGGTGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACT
TCATCCAGAAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATC
GTCGTCAATCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGA
TGATGCATACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGG
AGGAGCCGTGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAG
CTGGTGGATGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGG
TATATTCGGCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTA
AGAATCCCGGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAAT
CCCACCGAGTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTC
CAATCCGGATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGT
ACGAGAGCACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAAC
TTCCTGGCCGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGA
TGGCAATGATCACATCCAGACCATCTTCAAGCAGCGCGAGGGATACGATC
ACAGCTACTTCTACATCGCCACGTTCGTCGCCGAACACATCGCCTACCAT
GCCGCCCTGCTCACAGCTTCCGCTGCAAGCTTTCTAGACC
BO06057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-PB | 993 | CG4390-RB | 131..990 | 15..874 | 4300 | 100 | Plus |
| CG4390-PA | 861 | CG4390-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RA | 1006 | CG4390-RA | 51..910 | 15..874 | 4300 | 100 | Plus |
| CG4390-RB | 1141 | CG4390-RB | 186..1045 | 15..874 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056514..20057373 | 874..15 | 4300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:51:18 has no hits.
BO06057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:43 Download gff for
BO06057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-PB | 128..993 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:09 Download gff for
BO06057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-PB | 128..993 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:56 Download gff for
BO06057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 198..1060 | 10..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:21 Download gff for
BO06057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 183..1045 | 10..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:21 Download gff for
BO06057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056514..20057377 | 9..874 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:56 Download gff for
BO06057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882236..15883099 | 9..874 | 99 | | Minus |
BO06057.complete Sequence
892 bp (892 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630259
> BO06057.complete
GAAGTTATCAGTCGACATGACGCTCGAACAGCTGTCCGCAAATAAGTGCT
TCGAGGGCGAGCAACGCGTGTATCGCCATCGCTCGGACACCTTGAAGTGC
GACATGACCTTTGGCGTCTTCCTGCCGCCGGCCGCTTTGGAGGGTAAACC
GTGTCCGGTGCTGTTCTTCCTCAGCGGACTGACCTGCACGCATGAGAACT
TCATCCAGAAGAGCGGATTCCAGCAGCACGCCGCCCGCCACAACCTGATC
GTCGTCAATCCGGACACTTCGCCCAGGGGCGTGGAAATTGCCGGCCAAGA
TGATGCATACGACTTTGGAAGCGGGGCTGGATTCTATGTGGATGCAAAGG
AGGAGCCGTGGTCGAAGCACTACAAGATGTACAGCTATGTGACCCAGGAG
CTGGTGGATGTGGTCAATGCCAATCTGCCCGTGGTTCCCGGTAAACGCGG
TATATTCGGCCACAGTATGGGCGGCCACGGAGCCCTGATCTGCGCGCTTA
AGAATCCCGGGCTGTACCAGTCGGTGTCCGCTTTTGCGCCGATTGCCAAT
CCCACCGAGTGCCCGTGGGGCAAGAAGGCCTTTGCCGGCTATCTGGGCTC
CAATCCGGATGACTGGGCCCTGTGGGATGCCACGCATCTGGTGTCGCAGT
ACGAGAGCACTCCGCAGGAGCTCTTCATCGACCAAGGTGCAGCAGACAAC
TTCCTGGCCGGCAAGCAGCTGCTGCCGGAGAACCTGCTGGCTGCCGCAGA
TGGCAATGATCACATCCAGACCATCTTCAAGCAGCGCGAGGGATACGATC
ACAGCTACTTCTACATCGCCACGTTCGTCGCCGAACACATCGCCTACCAT
GCCGCCCTGCTCACAGCTTCCGCTGCAAGCTTTCTAGACCAT
BO06057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 993 | CG4390-PB | 131..990 | 15..874 | 4300 | 100 | Plus |
| CG4390-RA | 861 | CG4390-PA | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RA | 1006 | CG4390-RA | 51..910 | 15..874 | 4300 | 100 | Plus |
| CG4390-RB | 1141 | CG4390-RB | 186..1045 | 15..874 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056514..20057373 | 874..15 | 4300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:38:18 has no hits.
BO06057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:17 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 128..993 | 10..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:39 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RA | 72..935 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:19 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 203..1060 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:17 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RA | 72..935 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:41 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 188..1045 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:41 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056511..20057371 | 17..876 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:19 Download gff for
BO06057.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882233..15883093 | 17..876 | 99 | | Minus |
BO06057.pep Sequence
Translation from 16 to 892
> BO06057.pep
MTLEQLSANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGKPCPVLF
FLSGLTCTHENFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDF
GSGAGFYVDAKEEPWSKHYKMYSYVTQELVDVVNANLPVVPGKRGIFGHS
MGGHGALICALKNPGLYQSVSAFAPIANPTECPWGKKAFAGYLGSNPDDW
ALWDATHLVSQYESTPQELFIDQGAADNFLAGKQLLPENLLAAADGNDHI
QTIFKQREGYDHSYFYIATFVAEHIAYHAALLTASAASFLDH
BO06057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-PA | 286 | CG4390-PA | 1..286 | 1..286 | 1541 | 100 | Plus |
| CG4390-PB | 330 | CG4390-PB | 45..330 | 1..286 | 1541 | 100 | Plus |
