Clone Sequence Records
BO06059.3prime Sequence
966 bp (868 high quality bases) assembled on 2005-12-02
> BO06059.3prime
ATGGTCTAGAAAGCTTGCTTCTGCGGTTAGTTTCTTTAACTTCTTGGGTG
TCTTAATATTAGGTGTTTTCTCCTTGGGCGACTTTCTCTTAAGGTTTTCC
TTCGGCTGGTGCTTAGTATTTACTTCTGGTTTCTTAATTTTAGGTGCTTC
TCCTTTTTCCGACTTGGACTTCTTATCGTTTTGTTTCGTACTCAGTGGAT
TCTTCTCTGGGGATTTCCCTTTCTCGGCCTTTCGCTTGAGCTTATTTTTA
GAGCTCCGCTTGTTCTGAGTGTTGAAGCGCAATATAAGTGGCGTGCCAGC
CAGGCTGAGCTTCTCCTTGATGGCCTTGCGTGCATCGTGGGTCGTTGGCA
GGGTTACGGTCGCCGTGCTGTAGTCCCGGAATTTACCCTTGCCCGGTCGT
ATTTGAATGTCCACTGCCTGGTCGTGGAACAGCTGGCGCACCTGGGGCAA
CGAACTGGTCTTTGGCAGATTGGTAATGACCACGGACGAGGTGAAGTTAC
CCTTGGTGAGGACCTTCTTAGTAGCACGCTTCATCAGGGCCTTGGTACGT
TTGTTTACGATGGATGTCTGCTTGCGGGTCACCAGCTCGTTGACAAAATC
ATCGGAATCCGTCTTAGGCAGTGATACGAATAAGCCCTTGTGCTTGTCAT
CCTTTTCGATCGAAGCCTTGATATCCTTAAAGGCTTGATCGCGATCTTCC
TTCGACTTGAAATCGACGAGGCAGAAACGTGCATGCTTCTGGCGAGGCTT
TGTGGACTTCAGAACCAGTGGATGCAGAGCCTTCACCTTGGCATTGAATT
CATCCAAGTCCAGGGGCAGTTTTTGGGGAAACCGGACATACAGCCGGGTG
CCCTTTAACTGCTCGTACTTGGTGTGGATCTTCTCGTCGATAATCTCGGC
ACGGCTTTTGGGCTGCGGTTTGATTGTATCTTCCTCCTCACCATCATCTT
CATCGGGATTCGGTGT
BO06059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-PA | 1125 | CG18178-RA | 185..1122 | 956..19 | 4690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 256..1202 | 966..19 | 4715 | 99.9 | Minus |
| CG18178-RA | 1310 | CG18178-RA | 288..1234 | 966..19 | 4715 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9717862..9718799 | 19..956 | 4690 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:50:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4696..4779 | 199..114 | 119 | 63.2 | Minus |
BO06059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:46 Download gff for
BO06059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 176..1125 | 18..966 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:13 Download gff for
BO06059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 176..1125 | 18..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:14 Download gff for
BO06059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 288..1234 | 19..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:17:41 Download gff for
BO06059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 288..1234 | 19..966 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:17:41 Download gff for
BO06059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9717862..9718808 | 19..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:14 Download gff for
BO06059.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9710962..9711908 | 19..966 | 99 | | Plus |
BO06059.5prime Sequence
880 bp (827 high quality bases) assembled on 2005-12-02
> BO06059.5prime
GAAGTTATCAGTCGACATGAAGAAAAAGCAGGTGGAAAGTGCATCCGAGG
AGGAGGAAGTGCAGTCCGAAAACTCCGAGGCTTCCGACGAGGAGGAGCTA
CAGGCAGAGGACTCCGACGAGGACCAGCTGCAGGCGGACGACTCCGAAGA
CGAAGATTCCGATGGATCCGAACTGGATCTGGACGCCAGTGACACCGAAT
CCGATGAAGATGATGGTGAGGAGGAAGATACAATCAAACCGCAGCCCAAA
AGCCGTGCCGAGATTATCGACGAGAAGATCCACACCAAGTACGAGCAGTT
AAAGGGCACCCGGCTGTATGTCCGGTTTCCCCAAAAACTGCCCCTGGACT
TGGATGAATTCAATGCCAAGGTGAAGGCTCTGCATCCACTGGTTCTGAAG
TCCACAAAGCCTCGCCAGAAGCATGCACGTTTCTGCCTCGTCGATTTCAA
GTCGAAGGAAGATCGCGATCAAGCCTTTAAGGATATCAAGGCTTCGATCG
AAAAGGATGACAAGCACAAGGGCTTATTCGTATCACTGCCTAAGACGGAT
TCCGATGATTTTGTCAACGAGCTGGTGACCCGCAAGCAGACATCCATCGT
AAACAAACGTACCAAGGCCCTGATGAAGCGTGCTACTAAGAAGGTCCTCA
CCAAGGGTAACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAAAGACC
AGTTCGTTGCCCCAGGTGCGCCAGCTGTTCCACGACCAGGCAGTGGACAT
TCAAATACGACCGGGCAAGGGTAAATTCCGGGACTACAGCACGGCGACCG
TAACCCTGCCAACGACCCACGATGCACGCAAGGCCATCAAGGAGAAGCTC
AGCCTGGCTGGCACGCCACTTATATTGCGC
BO06059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-PA | 1125 | CG18178-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 79..944 | 15..880 | 4330 | 100 | Plus |
| CG18178-RA | 1310 | CG18178-RA | 111..976 | 15..880 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9718120..9718985 | 880..15 | 4330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:50:26 has no hits.
BO06059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:47 Download gff for
BO06059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:14 Download gff for
BO06059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:16 Download gff for
BO06059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 111..976 | 15..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:18:24 Download gff for
BO06059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 111..976 | 15..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:18:24 Download gff for
BO06059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9718120..9718985 | 15..880 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:16 Download gff for
BO06059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9711220..9712085 | 15..880 | 100 | | Minus |
BO06059.complete Sequence
1156 bp (1156 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630260
> BO06059.complete
GAAGTTATCAGTCGACATGAAGAAAAAGCAGGTGGAAAGTGCATCCGAGG
AGGAGGAAGTGCAGTCCGAAAACTCCGAGGCTTCCGACGAGGAGGAGCTA
CAGGCAGAGGACTCCGACGAGGACCAGCTGCAGGCGGACGACTCCGAAGA
CGAAGATTCCGATGGATCCGAACTGGATCTGGACGCCAGTGACACCGAAT
CCGATGAAGATGATGGTGAGGAGGAAGATACAATCAAACCGCAGCCCAAA
AGCCGTGCCGAGATTATCGACGAGAAGATCCACACCAAGTACGAGCAGTT
AAAGGGCACCCGGCTGTATGTCCGGTTTCCCCAAAAACTGCCCCTGGACT
TGGATGAATTCAATGCCAAGGTGAAGGCTCTGCATCCACTGGTTCTGAAG
TCCACAAAGCCTCGCCAGAAGCATGCACGTTTCTGCCTCGTCGATTTCAA
GTCGAAGGAAGATCGCGATCAAGCCTTTAAGGATATCAAGGCTTCGATCG
AAAAGGATGACAAGCACAAGGGCTTATTCGTATCACTGCCTAAGACGGAT
TCCGATGATTTTGTCAACGAGCTGGTGACCCGCAAGCAGACATCCATCGT
AAACAAACGTACCAAGGCCCTGATGAAGCGTGCTACTAAGAAGGTCCTCA
CCAAGGGTAACTTCACCTCGTCCGTGGTCATTACCAATCTGCCAAAGACC
AGTTCGTTGCCCCAGGTGCGCCAGCTGTTCCACGACCAGGCAGTGGACAT
TCAAATACGACCGGGCAAGGGTAAATTCCGGGACTACAGCACGGCGACCG
TAACCCTGCCAACGACCCACGATGCACGCAAGGCCATCAAGGAGAAGCTC
AGCCTGGCTGGCACGCCACTTATATTGCGCTTCAACACTCAGAACAAGCG
GAGCTCTAAAAATAAGCTCAAGCGAAAGGCCGAGAAAGGGAAATCCCCAG
AGAAGAATCCACTGAGTACGAAACAAAACGATAAGAAGTCCAAGTCGGAA
AAAGGAGAAGCACCTAAAATTAAGAAACCAGAAGTAAATACTAAGCACCA
GCCGAAGGAAAACCTTAAGAGAAAGTCGCCCAAGGAGAAAACACCTAATA
TTAAGACACCCAAGAAGTTAAAGAAACTAACCGCAGAAGCAAGCTTTCTA
GACCAT
BO06059.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1125 | CG18178-PB | 1..1122 | 17..1138 | 5610 | 100 | Plus |
| CG18178-RA | 1125 | CG18178-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-RB | 1278 | CG18178-RB | 79..1202 | 15..1138 | 5620 | 100 | Plus |
| CG18178-RA | 1310 | CG18178-RA | 111..1234 | 15..1138 | 5620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9717862..9718985 | 1138..15 | 5620 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4696..4779 | 958..1043 | 119 | 63.2 | Plus |
BO06059.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:18 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 1..1125 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:42 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 82..1205 | 15..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:31 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 113..1234 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:18 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 108..1231 | 15..1138 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:45 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18178-RA | 113..1234 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:45 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9717860..9718983 | 17..1140 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:31 Download gff for
BO06059.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9710960..9712083 | 17..1140 | 99 | | Minus |
BO06059.pep Sequence
Translation from 16 to 1156
> BO06059.pep
MKKKQVESASEEEEVQSENSEASDEEELQAEDSDEDQLQADDSEDEDSDG
SELDLDASDTESDEDDGEEEDTIKPQPKSRAEIIDEKIHTKYEQLKGTRL
YVRFPQKLPLDLDEFNAKVKALHPLVLKSTKPRQKHARFCLVDFKSKEDR
DQAFKDIKASIEKDDKHKGLFVSLPKTDSDDFVNELVTRKQTSIVNKRTK
ALMKRATKKVLTKGNFTSSVVITNLPKTSSLPQVRQLFHDQAVDIQIRPG
KGKFRDYSTATVTLPTTHDARKAIKEKLSLAGTPLILRFNTQNKRSSKNK
LKRKAEKGKSPEKNPLSTKQNDKKSKSEKGEAPKIKKPEVNTKHQPKENL
KRKSPKEKTPNIKTPKKLKKLTAEASFLDH
BO06059.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18178-PB | 374 | CG18178-PB | 1..374 | 1..374 | 1895 | 100 | Plus |
| CG18178-PA | 374 | CG18178-PA | 1..374 | 1..374 | 1895 | 100 | Plus |
