Clone Sequence Records
BO06060.5prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-02
> BO06060.5prime
GAAGTTATCAGTCGACATGGAAACGGCGTTGGCTGAAGTGCAACTTTCCT
GTCTGCTGTGCGAGCAGACTTTTGATGCCACTGAGAAGCTGGACGAACAC
CTCCCCACCCACTTTCCGCAGCCTGTGAGCACTGGTCAAACATGCGATAT
ATGCGGGCGCACGATGCGATCCTCGCTGGAACTGCACCAGCACTATAAAA
GATACCATGAAGCCCATGTGCCCAACACAGAGGGACACTTTCAATGCCAG
CTCTGCGACAAGGTATTCCTCCTCCAGGATCATCTCAAGGTACACGTGAA
GATTGAGCACGCGACCGATGGCTACCAACCAGATGAGAAGTCCTTAGATT
GGCAGCACTACTCTCCCAGAAGTCTAGACACAACAAACGATTATAAGCTG
GATCCCATCTTGTGTCCTCCACCAAAGAGGAAGTATCCGCCGCGCTCCCC
CTTCTTCAATCCGAATCTCTGGCTAGGCGCTGACAACTGTTTTATGGCAA
GCTTTCTAGACC
BO06060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-PA | 483 | CG12744-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG12744-PB | 483 | CG12744-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 839 | CG12744-RB | 167..646 | 17..496 | 2400 | 100 | Plus |
CG12744-RA | 906 | CG12744-RA | 234..713 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9875514..9875960 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:51:28 has no hits.
BO06060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:48 Download gff for
BO06060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:17 Download gff for
BO06060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PB | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:20:58 Download gff for
BO06060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..713 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:26 Download gff for
BO06060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..713 | 17..496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:26 Download gff for
BO06060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9875514..9875959 | 17..462 | 100 | -> | Plus |
2R | 9876016..9876049 | 463..496 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:20:58 Download gff for
BO06060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5763019..5763464 | 17..462 | 100 | -> | Plus |
arm_2R | 5763521..5763554 | 463..496 | 100 | | Plus |
BO06060.3prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-02
> BO06060.3prime
ATGGTCTAGAAAGCTTGCCATAAAACAGTTGTCAGCGCCTAGCCAGAGAT
TCGGATTGAAGAAGGGGGAGCGCGGCGGATACTTCCTCTTTGGTGGAGGA
CACAAGATGGGATCCAGCTTATAATCGTTTGTTGTGTCTAGACTTCTGGG
AGAGTAGTGCTGCCAATCTAAGGACTTCTCATCTGGTTGGTAGCCATCGG
TCGCGTGCTCAATCTTCACGTGTACCTTGAGATGATCCTGGAGGAGGAAT
ACCTTGTCGCAGAGCTGGCATTGAAAGTGTCCCTCTGTGTTGGGCACATG
GGCTTCATGGTATCTTTTATAGTGCTGGTGCAGTTCCAGCGAGGATCGCA
TCGTGCGCCCGCATATATCGCATGTTTGACCAGTGCTCACAGGCTGCGGA
AAGTGGGTGGGGAGGTGTTCGTCCAGCTTCTCAGTGGCATCAAAAGTCTG
CTCGCACAGCAGACAGGAAAGTTGCACTTCAGCCAACGCCGTTTCCATGT
CGACTGATAACT
BO06060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-PA | 483 | CG12744-RA | 1..480 | 498..19 | 2400 | 100 | Minus |
CG12744-PB | 483 | CG12744-RB | 1..480 | 498..19 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 839 | CG12744-RB | 167..646 | 498..19 | 2400 | 100 | Minus |
CG12744-RA | 906 | CG12744-RA | 234..713 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9875514..9875960 | 498..52 | 2235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:11:11 has no hits.
BO06060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:48 Download gff for
BO06060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PA | 1..483 | 18..498 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:15 Download gff for
BO06060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-PB | 1..483 | 18..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:16 Download gff for
BO06060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..713 | 19..498 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:40 Download gff for
BO06060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..713 | 19..498 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:40 Download gff for
BO06060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9875514..9875959 | 53..498 | 100 | -> | Minus |
2R | 9876016..9876049 | 19..52 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:16 Download gff for
BO06060.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5763019..5763464 | 53..498 | 100 | -> | Minus |
arm_2R | 5763521..5763554 | 19..52 | 100 | | Minus |
BO06060.complete Sequence
514 bp (514 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630261
> BO06060.complete
GAAGTTATCAGTCGACATGGAAACGGCGTTGGCTGAAGTGCAACTTTCCT
GTCTGCTGTGCGAGCAGACTTTTGATGCCACTGAGAAGCTGGACGAACAC
CTCCCCACCCACTTTCCGCAGCCTGTGAGCACTGGTCAAACATGCGATAT
ATGCGGGCGCACGATGCGATCCTCGCTGGAACTGCACCAGCACTATAAAA
GATACCATGAAGCCCATGTGCCCAACACAGAGGGACACTTTCAATGCCAG
CTCTGCGACAAGGTATTCCTCCTCCAGGATCATCTCAAGGTACACGTGAA
GATTGAGCACGCGACCGATGGCTACCAACCAGATGAGAAGTCCTTAGATT
GGCAGCACTACTCTCCCAGAAGTCTAGACACAACAAACGATTATAAGCTG
GATCCCATCTTGTGTCCTCCACCAAAGAGGAAGTATCCGCCGCGCTCCCC
CTTCTTCAATCCGAATCTCTGGCTAGGCGCTGACAACTGTTTTATGGCAA
GCTTTCTAGACCAT
BO06060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 483 | CG12744-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG12744-RA | 483 | CG12744-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-RB | 839 | CG12744-RB | 167..646 | 17..496 | 2400 | 100 | Plus |
CG12744-RA | 906 | CG12744-RA | 234..713 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9875514..9875960 | 17..463 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:08:25 has no hits.
BO06060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:19 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RB | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:43 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 231..710 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:45 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..713 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:20 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 231..710 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:41 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12744-RA | 234..713 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:41 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9875514..9875959 | 17..462 | 100 | -> | Plus |
2R | 9876016..9876049 | 463..498 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:45 Download gff for
BO06060.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5763019..5763464 | 17..462 | 100 | -> | Plus |
arm_2R | 5763521..5763554 | 463..498 | 94 | | Plus |
BO06060.pep Sequence
Translation from 16 to 514
> BO06060.pep
METALAEVQLSCLLCEQTFDATEKLDEHLPTHFPQPVSTGQTCDICGRTM
RSSLELHQHYKRYHEAHVPNTEGHFQCQLCDKVFLLQDHLKVHVKIEHAT
DGYQPDEKSLDWQHYSPRSLDTTNDYKLDPILCPPPKRKYPPRSPFFNPN
LWLGADNCFMASFLDH
BO06060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12744-PB | 160 | CG12744-PB | 1..160 | 1..160 | 905 | 100 | Plus |
CG12744-PA | 160 | CG12744-PA | 1..160 | 1..160 | 905 | 100 | Plus |