Clone Sequence Records
BO06061.3prime Sequence
674 bp (673 high quality bases) assembled on 2005-12-02
> BO06061.3prime
ATGGTCTAGAAAGCTTGCAGCCTTCGTCCATATACCACTGGCCACCCCCT
GCACCAAAGCCTGAGCCAATTTGGTGTAGTCCATTAGCTGGAGCTCAGGA
AGTTGGCTCTTCAGGTTCTGGGGAAACTCCAAGAAGGTTGTGATCAGACT
GTCCTTGGTTTCGGTGGCCAACTGGGTGACGTTGGAAACCAATTCCGACC
TGTCCTGTCGACTGAGTCGCAGATACTTGGTAAGATGCGGCTTGACCTTG
GCGAAGAATCTGCGGATGGCGATCTTCTCGCCGGGAAGAACCTCGACGAG
CAACTTATCGGGAGTCTTATGGTACATGAGGTCGCTGTTTATCCAGGCGA
AGATATAGAATGCAGTGCTGTAATAGTCCTCGTTCCCAGCAACCAGGTCG
AGCTCCTCGAAGTACTGCCGATCGATGGTTTCGTTGGCCGGAAGACCCGG
TAGTCGTTGGCGGGCATCTTCGATGGTCGTGTAGAGCACCTGATTGAAGA
GCCTCTCCACCGCTTGAATTGTATTTCTCACCAAGATGGTAGGGCTGCGT
TCTTTCACTTGGGATGAGTCCGCCAGAGCCAGACAGATAAGACCCAGAAG
CATCGAACAGCAAGTGCTGCCGCCGATAAGAAACCTCGAACTGCGCCCTG
ATCTCGCCATGTCGACTGATAACT
BO06061.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10658-PA | 645 | Os9-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..673 | 661..19 | 3215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966950..19967511 | 19..580 | 2810 | 100 | Plus |
| 2L | 23513712 | 2L | 19967573..19967655 | 579..661 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:51:17 has no hits.
BO06061.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:49 Download gff for
BO06061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os9-PA | 1..645 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:18 Download gff for
BO06061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10658-PA | 1..645 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:05 Download gff for
BO06061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..685 | 6..674 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:26:56 Download gff for
BO06061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..685 | 6..674 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:26:56 Download gff for
BO06061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966938..19967510 | 6..579 | 99 | <- | Plus |
| 2L | 19967574..19967669 | 580..674 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:05 Download gff for
BO06061.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966938..19967510 | 6..579 | 99 | <- | Plus |
| arm_2L | 19967574..19967669 | 580..674 | 94 | | Plus |
BO06061.5prime Sequence
674 bp (651 high quality bases) assembled on 2005-12-02
> BO06061.5prime
GAAGTTATCAGTCGACATGGCGAGATCAGGGCGCAGTTCGAGGTTTCTTA
TCGGCGGCAGCACTTGCTGTTCGATGCTTCTGGGTCTTATCTGTCTGGCT
CTGGCGGACTCATCCCAAGTGAAAGAACGCAGCCCTACCATCTTGGTGAG
AAATACAATTCAAGCGGTGGAGAGGCTCTTCAATCAGGTGCTCTACACGA
CCATCGAAGATGCCCGCCAACGACTACCGGGTCTTCCGGCCAACGAAACC
ATCGATCGGCAGTACTTCGAGGAGCTCGACCTGGTTGCTGGGAACGAGGA
CTATTACAGCACTGCATTCTATATCTTCGCCTGGATAAACAGCGACCTCA
TGTACCATAAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTCCCGGCGAG
AAGATCGCCATCCGCAGATTCTTCGCCAAGGTCAAGCCGCATCTTACCAA
GTATCTGCGACTCAGTCGACAGGACAGGTCGGAATTGGTTTCCAACGTCA
CCCAGTTGGCCACCGAAACCAAGGACAGTCTGATCACAACCTTCTTGGAG
TTTCCCCAGAACCTGAAGAGCCAACTTCCTGAGCTCCAGCTAATGGACTA
CACCAAATTGGCTCAGGCTTTGGTGCAGGGGGTGGCCAGTGGTATATGGA
CGAAGGCTGCAAGCTTTCTAGACC
BO06061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10658-PA | 645 | Os9-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..673 | 16..658 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966950..19967511 | 658..97 | 2810 | 100 | Minus |
| 2L | 23513712 | 2L | 19967573..19967655 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:28:24 has no hits.
BO06061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:50 Download gff for
BO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Os9-PA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:20 Download gff for
BO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10658-PA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:57:44 Download gff for
BO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..685 | 3..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:20 Download gff for
BO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 17..685 | 3..671 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:20 Download gff for
BO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966938..19967510 | 98..671 | 99 | <- | Minus |
| 2L | 19967574..19967669 | 3..97 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:57:44 Download gff for
BO06061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966938..19967510 | 98..671 | 99 | <- | Minus |
| arm_2L | 19967574..19967669 | 3..97 | 94 | | Minus |
BO06061.complete Sequence
676 bp (676 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630262
> BO06061.complete
GAAGTTATCAGTCGACATGGCGAGATCAGGGCGCAGTTCGAGGTTTCTTA
TCGGCGGCAGCACTTGCTGTTCGATGCTTCTGGGTCTTATCTGTCTGGCT
CTGGCGGACTCATCCCAAGTGAAAGAACGCAGCCCTACCATCTTGGTGAG
AAATACAATTCAAGCGGTGGAGAGGCTCTTCAATCAGGTGCTCTACACGA
CCATCGAAGATGCCCGCCAACGACTACCGGGTCTTCCGGCCAACGAAACC
ATCGATCGGCAGTACTTCGAGGAGCTCGACCTGGTTGCTGGGAACGAGGA
CTATTACAGCACTGCATTCTATATCTTCGCCTGGATAAACAGCGACCTCA
TGTACCATAAGACTCCCGATAAGTTGCTCGTCGAGGTTCTTCCCGGCGAG
AAGATCGCCATCCGCAGATTCTTCGCCAAGGTCAAGCCGCATCTTACCAA
GTATCTGCGACTCAGTCGACAGGACAGGTCGGAATTGGTTTCCAACGTCA
CCCAGTTGGCCACCGAAACCAAGGACAGTCTGATCACAACCTTCTTGGAG
TTTCCCCAGAACCTGAAGAGCCAACTTCCTGAGCTCCAGCTAATGGACTA
CACCAAATTGGCTCAGGCTTTGGTGCAGGGGGTGGCCAGTGGTATATGGA
CGAAGGCTGCAAGCTTTCTAGACCAT
BO06061.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 645 | CG10658-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-RA | 896 | CG10658-RA | 31..673 | 16..658 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19966950..19967511 | 658..97 | 2810 | 100 | Minus |
| 2L | 23513712 | 2L | 19967573..19967655 | 98..16 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:05:41 has no hits.
BO06061.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:20 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:45 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 3..667 | 7..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:47 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 32..673 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:21 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 3..667 | 7..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:21 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hf-RA | 32..673 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:21 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19966948..19967510 | 98..660 | 99 | <- | Minus |
| 2L | 19967574..19967654 | 17..97 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:47 Download gff for
BO06061.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19966948..19967510 | 98..660 | 99 | <- | Minus |
| arm_2L | 19967574..19967654 | 17..97 | 100 | | Minus |
BO06061.pep Sequence
Translation from 16 to 676
> BO06061.pep
MARSGRSSRFLIGGSTCCSMLLGLICLALADSSQVKERSPTILVRNTIQA
VERLFNQVLYTTIEDARQRLPGLPANETIDRQYFEELDLVAGNEDYYSTA
FYIFAWINSDLMYHKTPDKLLVEVLPGEKIAIRRFFAKVKPHLTKYLRLS
RQDRSELVSNVTQLATETKDSLITTFLEFPQNLKSQLPELQLMDYTKLAQ
ALVQGVASGIWTKAASFLDH
BO06061.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hf-PA | 214 | CG10658-PA | 1..214 | 1..214 | 1081 | 100 | Plus |
