Clone BO06062 Report

Search the DGRC for BO06062

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:62
Vector:pDNR-Dual
Associated Gene/TranscripteIF4E-3-RA
Protein status:BO06062.pep: validated full length
Sequenced Size:766

Clone Sequence Records

BO06062.3prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-02

> BO06062.3prime
ATGGTCTAGAAAGCTTGCCAATGTGTAGATGGCATTGACATTGGGTCCAT
GGTTCACCATGGCATCCTTGTGCACCTGGTACTGGATTTCCATAATGCCC
AGATGCAGCAGCTCCTTTATCTGCCTGCCAATGGACAGGATAGCCTCTAC
ATTGCGAGAGTCCTTCGTCCAAAGGGATAGCTTATTAGCCTTGTTGCGCA
CATTGATGACCACTCCACATATCTCGTCCGAGTGCTGGAAGCACTCGCCA
ATCATGCACAAAAGCAAATCGTGCCACATCTTATCTATATAGGTCCTGGA
GGCCTTGTCCAGGAGCAGTATCCAACGACCACCGTTCTTATTGGTGTCAT
CCTCCCACATGGGACGAATATTTTTCTTGAAGACCATGTAGTCATTGAAT
ATCTTCAGATCCGATGGCGGCTTCACAAAGTAGTACACACTGAAGAAGTC
CTCAACGGTGTTGAAGCTGGTCACATCGACGAGCATTTCGGCCCAGCGCT
TGGTACGATCGTTCTCCAAGTGCCACAAAGTCCAGGTATGCTCCAATGGA
TGCTTCATGGCCAGGTCGTAGTCGATGTTTTTCATCACCCGGTTCAATGA
GGGCTGCAACTCCTCCTCATTGCCGCTCATCAGTTCCAAACCATCATAAA
CTGCCAGACCATGTGACCAGTCATTGGGATCTCCATACGGCACCCATGCA
GTTTCCTCAGCATTCTGCAATCCGTTGCTTACGTAACCGGTGTACACCAT
GTCGACTGATAACT

BO06062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8023-PA 735 CG8023-RA 1..732 750..19 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1040 CG8023-RA 159..890 750..19 3660 100 Minus
eIF-4E-RI 1793 CG4035-RI 1019..1324 535..230 210 72.1 Minus
eIF-4E-RH 1492 CG4035-RH 718..1023 535..230 210 72.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8229498..8229757 699..440 1300 100 Minus
3L 28110227 3L 8230261..8230418 176..19 790 100 Minus
3L 28110227 3L 8229952..8230052 365..265 505 100 Minus
3L 28110227 3L 8230115..8230203 265..177 445 100 Minus
3L 28110227 3L 8229821..8229898 442..365 390 100 Minus
3L 28110227 3L 8229382..8229433 750..699 260 100 Minus
3L 28110227 3L 7895198..7895260 555..493 180 85.7 Minus
Blast to na_te.dros performed on 2015-02-12 01:26:24 has no hits.

BO06062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:51 Download gff for BO06062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 18..750 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:21 Download gff for BO06062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 18..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:58 Download gff for BO06062.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 13..750 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:42 Download gff for BO06062.3prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 13..750 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:42 Download gff for BO06062.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8230261..8230423 13..176 98   Minus
3L 8229382..8229433 699..750 100 -> Minus
3L 8229499..8229757 440..698 100 -> Minus
3L 8229824..8229898 365..439 100 -> Minus
3L 8229953..8230052 265..364 100 -> Minus
3L 8230116..8230203 177..264 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:58 Download gff for BO06062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8222482..8222533 699..750 100 -> Minus
arm_3L 8222599..8222857 440..698 100 -> Minus
arm_3L 8222924..8222998 365..439 100 -> Minus
arm_3L 8223053..8223152 265..364 100 -> Minus
arm_3L 8223216..8223303 177..264 100 -> Minus
arm_3L 8223361..8223523 13..176 98   Minus

BO06062.5prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-02

> BO06062.5prime
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGGC
AAGCTTTCTAGACC

BO06062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8023-PA 735 CG8023-RA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1040 CG8023-RA 159..890 17..748 3660 100 Plus
eIF-4E-RI 1793 CG4035-RI 1019..1324 232..537 210 72.1 Plus
eIF-4E-RH 1492 CG4035-RH 718..1023 232..537 210 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8229498..8229757 68..327 1300 100 Plus
3L 28110227 3L 8230261..8230418 591..748 790 100 Plus
3L 28110227 3L 8229952..8230052 402..502 505 100 Plus
3L 28110227 3L 8230115..8230203 502..590 445 100 Plus
3L 28110227 3L 8229821..8229898 325..402 390 100 Plus
3L 28110227 3L 8229382..8229433 17..68 260 100 Plus
3L 28110227 3L 7895198..7895260 212..274 180 85.7 Plus
Blast to na_te.dros performed on 2015-02-13 00:45:51 has no hits.

BO06062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:52 Download gff for BO06062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 17..749 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:22 Download gff for BO06062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8023-PA 1..735 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:18 Download gff for BO06062.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 17..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:31 Download gff for BO06062.5prime
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..895 17..754 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:31 Download gff for BO06062.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8230116..8230203 503..590 100 -> Plus
3L 8230261..8230423 591..754 98   Plus
3L 8229382..8229433 17..68 100 -> Plus
3L 8229499..8229757 69..327 100 -> Plus
3L 8229824..8229898 328..402 100 -> Plus
3L 8229953..8230052 403..502 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:18 Download gff for BO06062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8222482..8222533 17..68 100 -> Plus
arm_3L 8222599..8222857 69..327 100 -> Plus
arm_3L 8222924..8222998 328..402 100 -> Plus
arm_3L 8223053..8223152 403..502 100 -> Plus
arm_3L 8223216..8223303 503..590 100 -> Plus
arm_3L 8223361..8223523 591..754 98   Plus

BO06062.complete Sequence

766 bp (766 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630263

> BO06062.complete
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGGC
AAGCTTTCTAGACCAT

BO06062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 735 CG8023-PA 1..732 17..748 3660 100 Plus
eIF-4E-RI 780 CG4035-PI 258..563 232..537 210 71.2 Plus
eIF-4E-RH 780 CG4035-PH 258..563 232..537 210 71.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-RA 1040 CG8023-RA 159..890 17..748 3660 100 Plus
eIF-4E-RI 1793 CG4035-RI 1019..1324 232..537 210 71.2 Plus
eIF-4E-RH 1492 CG4035-RH 718..1023 232..537 210 71.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8229498..8229757 68..327 1300 100 Plus
3L 28110227 3L 8230261..8230418 591..748 790 100 Plus
3L 28110227 3L 8229952..8230052 402..502 505 100 Plus
3L 28110227 3L 8230115..8230203 502..590 445 100 Plus
3L 28110227 3L 8229821..8229898 325..402 390 100 Plus
3L 28110227 3L 8229382..8229433 17..68 260 100 Plus
3L 28110227 3L 7895198..7895260 212..274 180 85.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:45:37 has no hits.

BO06062.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:21 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 1..735 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:47 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 150..886 17..754 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:56 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..890 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:22 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 150..886 17..754 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:13 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
eIF4E-3-RA 159..890 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:13 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8229382..8229433 17..68 100 -> Plus
3L 8229499..8229757 69..327 100 -> Plus
3L 8229824..8229898 328..402 100 -> Plus
3L 8229953..8230052 403..502 100 -> Plus
3L 8230116..8230203 503..590 100 -> Plus
3L 8230261..8230418 591..750 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:56 Download gff for BO06062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8222482..8222533 17..68 100 -> Plus
arm_3L 8222599..8222857 69..327 100 -> Plus
arm_3L 8222924..8222998 328..402 100 -> Plus
arm_3L 8223053..8223152 403..502 100 -> Plus
arm_3L 8223216..8223303 503..590 100 -> Plus
arm_3L 8223361..8223518 591..750 98   Plus

BO06062.pep Sequence

Translation from 16 to 766

> BO06062.pep
MVYTGYVSNGLQNAEETAWVPYGDPNDWSHGLAVYDGLELMSGNEEELQP
SLNRVMKNIDYDLAMKHPLEHTWTLWHLENDRTKRWAEMLVDVTSFNTVE
DFFSVYYFVKPPSDLKIFNDYMVFKKNIRPMWEDDTNKNGGRWILLLDKA
SRTYIDKMWHDLLLCMIGECFQHSDEICGVVINVRNKANKLSLWTKDSRN
VEAILSIGRQIKELLHLGIMEIQYQVHKDAMVNHGPNVNAIYTLASFLDH

BO06062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
eIF4E-3-PA 244 CG8023-PA 1..244 1..244 1329 100 Plus
eIF-4E-PC 248 CG4035-PC 69..248 66..244 614 58.3 Plus
eIF-4E-PI 259 CG4035-PI 80..259 66..244 614 58.3 Plus
eIF-4E-PH 259 CG4035-PH 80..259 66..244 614 58.3 Plus
eIF-4E-PD 259 CG4035-PD 80..259 66..244 614 58.3 Plus