Clone Sequence Records
BO06062.3prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-02
> BO06062.3prime
ATGGTCTAGAAAGCTTGCCAATGTGTAGATGGCATTGACATTGGGTCCAT
GGTTCACCATGGCATCCTTGTGCACCTGGTACTGGATTTCCATAATGCCC
AGATGCAGCAGCTCCTTTATCTGCCTGCCAATGGACAGGATAGCCTCTAC
ATTGCGAGAGTCCTTCGTCCAAAGGGATAGCTTATTAGCCTTGTTGCGCA
CATTGATGACCACTCCACATATCTCGTCCGAGTGCTGGAAGCACTCGCCA
ATCATGCACAAAAGCAAATCGTGCCACATCTTATCTATATAGGTCCTGGA
GGCCTTGTCCAGGAGCAGTATCCAACGACCACCGTTCTTATTGGTGTCAT
CCTCCCACATGGGACGAATATTTTTCTTGAAGACCATGTAGTCATTGAAT
ATCTTCAGATCCGATGGCGGCTTCACAAAGTAGTACACACTGAAGAAGTC
CTCAACGGTGTTGAAGCTGGTCACATCGACGAGCATTTCGGCCCAGCGCT
TGGTACGATCGTTCTCCAAGTGCCACAAAGTCCAGGTATGCTCCAATGGA
TGCTTCATGGCCAGGTCGTAGTCGATGTTTTTCATCACCCGGTTCAATGA
GGGCTGCAACTCCTCCTCATTGCCGCTCATCAGTTCCAAACCATCATAAA
CTGCCAGACCATGTGACCAGTCATTGGGATCTCCATACGGCACCCATGCA
GTTTCCTCAGCATTCTGCAATCCGTTGCTTACGTAACCGGTGTACACCAT
GTCGACTGATAACT
BO06062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8023-PA | 735 | CG8023-RA | 1..732 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 1040 | CG8023-RA | 159..890 | 750..19 | 3660 | 100 | Minus |
eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 535..230 | 210 | 72.1 | Minus |
eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 535..230 | 210 | 72.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8229498..8229757 | 699..440 | 1300 | 100 | Minus |
3L | 28110227 | 3L | 8230261..8230418 | 176..19 | 790 | 100 | Minus |
3L | 28110227 | 3L | 8229952..8230052 | 365..265 | 505 | 100 | Minus |
3L | 28110227 | 3L | 8230115..8230203 | 265..177 | 445 | 100 | Minus |
3L | 28110227 | 3L | 8229821..8229898 | 442..365 | 390 | 100 | Minus |
3L | 28110227 | 3L | 8229382..8229433 | 750..699 | 260 | 100 | Minus |
3L | 28110227 | 3L | 7895198..7895260 | 555..493 | 180 | 85.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:26:24 has no hits.
BO06062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:51 Download gff for
BO06062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 18..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:21 Download gff for
BO06062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 18..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:42:58 Download gff for
BO06062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 13..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:42 Download gff for
BO06062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 13..750 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:42 Download gff for
BO06062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8230261..8230423 | 13..176 | 98 | | Minus |
3L | 8229382..8229433 | 699..750 | 100 | -> | Minus |
3L | 8229499..8229757 | 440..698 | 100 | -> | Minus |
3L | 8229824..8229898 | 365..439 | 100 | -> | Minus |
3L | 8229953..8230052 | 265..364 | 100 | -> | Minus |
3L | 8230116..8230203 | 177..264 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:42:58 Download gff for
BO06062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8222482..8222533 | 699..750 | 100 | -> | Minus |
arm_3L | 8222599..8222857 | 440..698 | 100 | -> | Minus |
arm_3L | 8222924..8222998 | 365..439 | 100 | -> | Minus |
arm_3L | 8223053..8223152 | 265..364 | 100 | -> | Minus |
arm_3L | 8223216..8223303 | 177..264 | 100 | -> | Minus |
arm_3L | 8223361..8223523 | 13..176 | 98 | | Minus |
BO06062.5prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-02
> BO06062.5prime
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGGC
AAGCTTTCTAGACC
BO06062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8023-PA | 735 | CG8023-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 1040 | CG8023-RA | 159..890 | 17..748 | 3660 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 232..537 | 210 | 72.1 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 232..537 | 210 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8229498..8229757 | 68..327 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 8230261..8230418 | 591..748 | 790 | 100 | Plus |
3L | 28110227 | 3L | 8229952..8230052 | 402..502 | 505 | 100 | Plus |
3L | 28110227 | 3L | 8230115..8230203 | 502..590 | 445 | 100 | Plus |
3L | 28110227 | 3L | 8229821..8229898 | 325..402 | 390 | 100 | Plus |
3L | 28110227 | 3L | 8229382..8229433 | 17..68 | 260 | 100 | Plus |
3L | 28110227 | 3L | 7895198..7895260 | 212..274 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:45:51 has no hits.
BO06062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:52 Download gff for
BO06062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:22 Download gff for
BO06062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8023-PA | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:18 Download gff for
BO06062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:55:31 Download gff for
BO06062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..895 | 17..754 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:55:31 Download gff for
BO06062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8230116..8230203 | 503..590 | 100 | -> | Plus |
3L | 8230261..8230423 | 591..754 | 98 | | Plus |
3L | 8229382..8229433 | 17..68 | 100 | -> | Plus |
3L | 8229499..8229757 | 69..327 | 100 | -> | Plus |
3L | 8229824..8229898 | 328..402 | 100 | -> | Plus |
3L | 8229953..8230052 | 403..502 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:18 Download gff for
BO06062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8222482..8222533 | 17..68 | 100 | -> | Plus |
arm_3L | 8222599..8222857 | 69..327 | 100 | -> | Plus |
arm_3L | 8222924..8222998 | 328..402 | 100 | -> | Plus |
arm_3L | 8223053..8223152 | 403..502 | 100 | -> | Plus |
arm_3L | 8223216..8223303 | 503..590 | 100 | -> | Plus |
arm_3L | 8223361..8223523 | 591..754 | 98 | | Plus |
BO06062.complete Sequence
766 bp (766 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630263
> BO06062.complete
GAAGTTATCAGTCGACATGGTGTACACCGGTTACGTAAGCAACGGATTGC
AGAATGCTGAGGAAACTGCATGGGTGCCGTATGGAGATCCCAATGACTGG
TCACATGGTCTGGCAGTTTATGATGGTTTGGAACTGATGAGCGGCAATGA
GGAGGAGTTGCAGCCCTCATTGAACCGGGTGATGAAAAACATCGACTACG
ACCTGGCCATGAAGCATCCATTGGAGCATACCTGGACTTTGTGGCACTTG
GAGAACGATCGTACCAAGCGCTGGGCCGAAATGCTCGTCGATGTGACCAG
CTTCAACACCGTTGAGGACTTCTTCAGTGTGTACTACTTTGTGAAGCCGC
CATCGGATCTGAAGATATTCAATGACTACATGGTCTTCAAGAAAAATATT
CGTCCCATGTGGGAGGATGACACCAATAAGAACGGTGGTCGTTGGATACT
GCTCCTGGACAAGGCCTCCAGGACCTATATAGATAAGATGTGGCACGATT
TGCTTTTGTGCATGATTGGCGAGTGCTTCCAGCACTCGGACGAGATATGT
GGAGTGGTCATCAATGTGCGCAACAAGGCTAATAAGCTATCCCTTTGGAC
GAAGGACTCTCGCAATGTAGAGGCTATCCTGTCCATTGGCAGGCAGATAA
AGGAGCTGCTGCATCTGGGCATTATGGAAATCCAGTACCAGGTGCACAAG
GATGCCATGGTGAACCATGGACCCAATGTCAATGCCATCTACACATTGGC
AAGCTTTCTAGACCAT
BO06062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 735 | CG8023-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
eIF-4E-RI | 780 | CG4035-PI | 258..563 | 232..537 | 210 | 71.2 | Plus |
eIF-4E-RH | 780 | CG4035-PH | 258..563 | 232..537 | 210 | 71.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-RA | 1040 | CG8023-RA | 159..890 | 17..748 | 3660 | 100 | Plus |
eIF-4E-RI | 1793 | CG4035-RI | 1019..1324 | 232..537 | 210 | 71.2 | Plus |
eIF-4E-RH | 1492 | CG4035-RH | 718..1023 | 232..537 | 210 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8229498..8229757 | 68..327 | 1300 | 100 | Plus |
3L | 28110227 | 3L | 8230261..8230418 | 591..748 | 790 | 100 | Plus |
3L | 28110227 | 3L | 8229952..8230052 | 402..502 | 505 | 100 | Plus |
3L | 28110227 | 3L | 8230115..8230203 | 502..590 | 445 | 100 | Plus |
3L | 28110227 | 3L | 8229821..8229898 | 325..402 | 390 | 100 | Plus |
3L | 28110227 | 3L | 8229382..8229433 | 17..68 | 260 | 100 | Plus |
3L | 28110227 | 3L | 7895198..7895260 | 212..274 | 180 | 85.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:45:37 has no hits.
BO06062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:21 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:47 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 150..886 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:56 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..890 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:22 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 150..886 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:13 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eIF4E-3-RA | 159..890 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:13 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8229382..8229433 | 17..68 | 100 | -> | Plus |
3L | 8229499..8229757 | 69..327 | 100 | -> | Plus |
3L | 8229824..8229898 | 328..402 | 100 | -> | Plus |
3L | 8229953..8230052 | 403..502 | 100 | -> | Plus |
3L | 8230116..8230203 | 503..590 | 100 | -> | Plus |
3L | 8230261..8230418 | 591..750 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:56 Download gff for
BO06062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8222482..8222533 | 17..68 | 100 | -> | Plus |
arm_3L | 8222599..8222857 | 69..327 | 100 | -> | Plus |
arm_3L | 8222924..8222998 | 328..402 | 100 | -> | Plus |
arm_3L | 8223053..8223152 | 403..502 | 100 | -> | Plus |
arm_3L | 8223216..8223303 | 503..590 | 100 | -> | Plus |
arm_3L | 8223361..8223518 | 591..750 | 98 | | Plus |
BO06062.pep Sequence
Translation from 16 to 766
> BO06062.pep
MVYTGYVSNGLQNAEETAWVPYGDPNDWSHGLAVYDGLELMSGNEEELQP
SLNRVMKNIDYDLAMKHPLEHTWTLWHLENDRTKRWAEMLVDVTSFNTVE
DFFSVYYFVKPPSDLKIFNDYMVFKKNIRPMWEDDTNKNGGRWILLLDKA
SRTYIDKMWHDLLLCMIGECFQHSDEICGVVINVRNKANKLSLWTKDSRN
VEAILSIGRQIKELLHLGIMEIQYQVHKDAMVNHGPNVNAIYTLASFLDH
BO06062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eIF4E-3-PA | 244 | CG8023-PA | 1..244 | 1..244 | 1329 | 100 | Plus |
eIF-4E-PC | 248 | CG4035-PC | 69..248 | 66..244 | 614 | 58.3 | Plus |
eIF-4E-PI | 259 | CG4035-PI | 80..259 | 66..244 | 614 | 58.3 | Plus |
eIF-4E-PH | 259 | CG4035-PH | 80..259 | 66..244 | 614 | 58.3 | Plus |
eIF-4E-PD | 259 | CG4035-PD | 80..259 | 66..244 | 614 | 58.3 | Plus |