Clone BO06063 Report

Search the DGRC for BO06063

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptPtpa-RA
Protein status:BO06063.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO06063.3prime Sequence

806 bp (804 high quality bases) assembled on 2005-12-02

> BO06063.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGCTGGGCTTATCCCCAGATCCCTCGG
CGGCCGCCACCAGAGAAGACGACGATGTGGATGGACGTAGTACCACGCTG
TTGTCGCTGCTCTCACTGCTCGAGTCGCCCACATTCTGTTCGATGCTAAG
AGATTCGGCGGGCGGAGGAGGAGCAGTGGCAACAGGAACTGGTGGCACCA
AGTTTGGAGTCCCGATGCAGATGCGTTTGGATGGCGGCGGAGCCACATGA
CCCAGTCGTGCGTTGGACAGAGTTGTGCCAGAGGAGACGGGCTCGAATGT
CATCAGTTCTCCGAAGTAGACGTGCTGGATCACGGGAAACTTGGAGAGAA
TCTCCTTTTGGTACATCTTAACTAGTCCCGCGTTGATCTTGGCCCATGTT
GGCACATCCGTGATGCTCCACAGCTGGTTAGAGTGCTCGCCAAAGTGTCC
AGTCTTGACCTTGCAGATGTAGTCGATGCAACTGATGAACATGAAGTGAT
CCTTGTACTCGGTGATTATCGCCTCGTCCACGAACTTCGAGGGATCAAAG
GGACTCTTAACCGCCAGCTGTGCACTGCCCCAGATGAAGGGCACGAACTG
GAAATCGTCCAGCGACCAGACTCCTTGGCTCCCAGCGGGTTCCATGTTGT
ATGTTCGCTGCAGCTGCCTGGCGAGCTCAAGGTACCGATTGAAGAGTCTC
AGCGCAGCACTCACGATGTCCCTTTCCTGCAGGATCTCCGCCTTGAACAG
GGAGCACAGGAAGAAGAGGAAGGACAGCTCGTGGCCGGTGCCGTAGTCGA
TCCTGG

BO06063.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3289-PA 1197 Ptpa-RA 407..1194 806..19 3940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1393 CG3289-RA 504..1291 806..19 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3378154..3378488 353..19 1675 100 Minus
2L 23513712 2L 3377560..3377809 806..557 1235 99.6 Minus
2L 23513712 2L 3377861..3378070 561..352 1050 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:57:59 has no hits.

BO06063.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:53 Download gff for BO06063.3prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-PA 407..1197 18..806 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:23 Download gff for BO06063.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3289-PA 407..1197 18..806 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:13 Download gff for BO06063.3prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 504..1291 19..806 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:01 Download gff for BO06063.3prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 504..1291 19..806 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:01 Download gff for BO06063.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3377560..3377805 561..806 100 -> Minus
2L 3377862..3378070 352..560 100 -> Minus
2L 3378156..3378492 14..351 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:13 Download gff for BO06063.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377560..3377805 561..806 100 -> Minus
arm_2L 3377862..3378070 352..560 100 -> Minus
arm_2L 3378156..3378492 14..351 98 -> Minus

BO06063.5prime Sequence

763 bp (723 high quality bases) assembled on 2005-12-02

> BO06063.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATC

BO06063.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3289-PA 1197 Ptpa-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1393 CG3289-RA 98..844 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377178..3377809 41..672 3145 99.8 Plus
2L 23513712 2L 3377861..3377956 668..763 480 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:46:22 has no hits.

BO06063.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:54 Download gff for BO06063.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:25 Download gff for BO06063.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3289-PA 1..747 17..763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:22 Download gff for BO06063.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..844 17..763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:42 Download gff for BO06063.5prime
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..844 17..763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:42 Download gff for BO06063.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3377862..3377956 669..763 100   Plus
2L 3377099..3377126 17..44 100 -> Plus
2L 3377182..3377805 45..668 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:22 Download gff for BO06063.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377099..3377126 17..44 100 -> Plus
arm_2L 3377182..3377805 45..668 100 -> Plus
arm_2L 3377862..3377956 669..763 100   Plus

BO06063.complete Sequence

1228 bp (1228 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630264

> BO06063.complete
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAGCACTCTA
ACCAGCTGTGGAGCATCACGGATGTGCCAACATGGGCCAAGATCAACGCG
GGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCCAAGTTTCCCGTGAT
CCAGCACGTCTACTTCGGAGAACTGATGACATTCGAGCCCGTCTCCTCTG
GCACAACTCTGTCCAACGCACGACTGGGTCATGTGGCTCCGCCGCCATCC
AAACGCATCTGCATCGGGACTCCAAACTTGGTGCCACCAGTTCCTGTTGC
CACTGCTCCTCCTCCGCCCGCCGAATCTCTTAGCATCGAACAGAATGTGG
GCGACTCGAGCAGTGAGAGCAGCGACAACAGCGTGGTACTACGTCCATCC
ACATCGTCGTCTTCTCTGGTGGCGGCCGCCGAGGGATCTGGGGATAAGCC
CAGCAAGGAAGCAAGCTTTCTAGACCAT

BO06063.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1197 CG3289-PA 1..1194 17..1210 5970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-RA 1393 CG3289-RA 98..1291 17..1210 5970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3377178..3377809 41..672 3145 99.8 Plus
2L 23513712 2L 3378154..3378488 876..1210 1675 100 Plus
2L 23513712 2L 3377861..3378070 668..877 1050 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:47:39 has no hits.

BO06063.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:23 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 1..1197 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:48 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 92..1285 17..1210 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:57 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..1291 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:23 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 92..1285 17..1210 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:47 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
Ptpa-RA 98..1291 17..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:47 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3377099..3377126 17..44 100 -> Plus
2L 3377182..3377805 45..668 100 -> Plus
2L 3377862..3378070 669..877 100 -> Plus
2L 3378156..3378488 878..1212 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:57 Download gff for BO06063.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3377099..3377126 17..44 100 -> Plus
arm_2L 3377182..3377805 45..668 100 -> Plus
arm_2L 3377862..3378070 669..877 100 -> Plus
arm_2L 3378156..3378488 878..1212 99   Plus

BO06063.pep Sequence

Translation from 16 to 1228

> BO06063.pep
MASGINQAAGKLPAIAKKVQNLGDMGVWQKSRAFHDLIGYINGTSSAIQG
IKTTDEIFESEMLKKLLRLFDALEKLVEQNPPLEQPQRFGNKAYRDWAQA
MRELLPELLEQLLPDDKKRYQVELGQYLTESFGNATRIDYGTGHELSFLF
FLCSLFKAEILQERDIVSAALRLFNRYLELARQLQRTYNMEPAGSQGVWS
LDDFQFVPFIWGSAQLAVKSPFDPSKFVDEAIITEYKDHFMFISCIDYIC
KVKTGHFGEHSNQLWSITDVPTWAKINAGLVKMYQKEILSKFPVIQHVYF
GELMTFEPVSSGTTLSNARLGHVAPPPSKRICIGTPNLVPPVPVATAPPP
PAESLSIEQNVGDSSSESSDNSVVLRPSTSSSSLVAAAEGSGDKPSKEAS
FLDH

BO06063.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ptpa-PA 398 CG3289-PA 1..398 1..398 2063 100 Plus
CG2104-PB 424 CG2104-PB 26..338 18..325 689 43.8 Plus
CG2104-PA 424 CG2104-PA 26..338 18..325 689 43.8 Plus
CG8509-PA 432 CG8509-PA 29..338 17..321 577 39.7 Plus