Clone Sequence Records
BO06063.3prime Sequence
806 bp (804 high quality bases) assembled on 2005-12-02
> BO06063.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGCTGGGCTTATCCCCAGATCCCTCGG
CGGCCGCCACCAGAGAAGACGACGATGTGGATGGACGTAGTACCACGCTG
TTGTCGCTGCTCTCACTGCTCGAGTCGCCCACATTCTGTTCGATGCTAAG
AGATTCGGCGGGCGGAGGAGGAGCAGTGGCAACAGGAACTGGTGGCACCA
AGTTTGGAGTCCCGATGCAGATGCGTTTGGATGGCGGCGGAGCCACATGA
CCCAGTCGTGCGTTGGACAGAGTTGTGCCAGAGGAGACGGGCTCGAATGT
CATCAGTTCTCCGAAGTAGACGTGCTGGATCACGGGAAACTTGGAGAGAA
TCTCCTTTTGGTACATCTTAACTAGTCCCGCGTTGATCTTGGCCCATGTT
GGCACATCCGTGATGCTCCACAGCTGGTTAGAGTGCTCGCCAAAGTGTCC
AGTCTTGACCTTGCAGATGTAGTCGATGCAACTGATGAACATGAAGTGAT
CCTTGTACTCGGTGATTATCGCCTCGTCCACGAACTTCGAGGGATCAAAG
GGACTCTTAACCGCCAGCTGTGCACTGCCCCAGATGAAGGGCACGAACTG
GAAATCGTCCAGCGACCAGACTCCTTGGCTCCCAGCGGGTTCCATGTTGT
ATGTTCGCTGCAGCTGCCTGGCGAGCTCAAGGTACCGATTGAAGAGTCTC
AGCGCAGCACTCACGATGTCCCTTTCCTGCAGGATCTCCGCCTTGAACAG
GGAGCACAGGAAGAAGAGGAAGGACAGCTCGTGGCCGGTGCCGTAGTCGA
TCCTGG
BO06063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3289-PA | 1197 | Ptpa-RA | 407..1194 | 806..19 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1393 | CG3289-RA | 504..1291 | 806..19 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3378154..3378488 | 353..19 | 1675 | 100 | Minus |
2L | 23513712 | 2L | 3377560..3377809 | 806..557 | 1235 | 99.6 | Minus |
2L | 23513712 | 2L | 3377861..3378070 | 561..352 | 1050 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:57:59 has no hits.
BO06063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:53 Download gff for
BO06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-PA | 407..1197 | 18..806 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:23 Download gff for
BO06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3289-PA | 407..1197 | 18..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:13 Download gff for
BO06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 504..1291 | 19..806 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:01 Download gff for
BO06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 504..1291 | 19..806 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:01 Download gff for
BO06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3377560..3377805 | 561..806 | 100 | -> | Minus |
2L | 3377862..3378070 | 352..560 | 100 | -> | Minus |
2L | 3378156..3378492 | 14..351 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:13 Download gff for
BO06063.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3377560..3377805 | 561..806 | 100 | -> | Minus |
arm_2L | 3377862..3378070 | 352..560 | 100 | -> | Minus |
arm_2L | 3378156..3378492 | 14..351 | 98 | -> | Minus |
BO06063.5prime Sequence
763 bp (723 high quality bases) assembled on 2005-12-02
> BO06063.5prime
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATC
BO06063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3289-PA | 1197 | Ptpa-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1393 | CG3289-RA | 98..844 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3377178..3377809 | 41..672 | 3145 | 99.8 | Plus |
2L | 23513712 | 2L | 3377861..3377956 | 668..763 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:46:22 has no hits.
BO06063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:54 Download gff for
BO06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:25 Download gff for
BO06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3289-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:22 Download gff for
BO06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..844 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:42 Download gff for
BO06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..844 | 17..763 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:42 Download gff for
BO06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3377862..3377956 | 669..763 | 100 | | Plus |
2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:22 Download gff for
BO06063.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
arm_2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
arm_2L | 3377862..3377956 | 669..763 | 100 | | Plus |
BO06063.complete Sequence
1228 bp (1228 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630264
> BO06063.complete
GAAGTTATCAGTCGACATGGCGAGTGGCATTAACCAAGCAGCAGGTAAAC
TGCCGGCAATTGCGAAGAAGGTGCAAAATCTCGGCGATATGGGCGTTTGG
CAAAAATCCCGCGCCTTCCACGATTTAATTGGATATATAAATGGCACCAG
TTCGGCCATTCAGGGCATTAAAACCACAGACGAGATTTTCGAGTCGGAAA
TGCTCAAGAAGCTGCTGCGGCTATTCGATGCACTGGAGAAATTGGTAGAG
CAAAATCCTCCATTGGAGCAGCCGCAGCGGTTCGGAAACAAAGCCTACAG
GGATTGGGCGCAGGCAATGCGGGAATTGTTGCCCGAACTCCTAGAACAGC
TGTTGCCAGACGACAAGAAGCGATACCAGGTGGAGCTGGGGCAGTATCTC
ACTGAATCTTTCGGCAATGCCACCAGGATCGACTACGGCACCGGCCACGA
GCTGTCCTTCCTCTTCTTCCTGTGCTCCCTGTTCAAGGCGGAGATCCTGC
AGGAAAGGGACATCGTGAGTGCTGCGCTGAGACTCTTCAATCGGTACCTT
GAGCTCGCCAGGCAGCTGCAGCGAACATACAACATGGAACCCGCTGGGAG
CCAAGGAGTCTGGTCGCTGGACGATTTCCAGTTCGTGCCCTTCATCTGGG
GCAGTGCACAGCTGGCGGTTAAGAGTCCCTTTGATCCCTCGAAGTTCGTG
GACGAGGCGATAATCACCGAGTACAAGGATCACTTCATGTTCATCAGTTG
CATCGACTACATCTGCAAGGTCAAGACTGGACACTTTGGCGAGCACTCTA
ACCAGCTGTGGAGCATCACGGATGTGCCAACATGGGCCAAGATCAACGCG
GGACTAGTTAAGATGTACCAAAAGGAGATTCTCTCCAAGTTTCCCGTGAT
CCAGCACGTCTACTTCGGAGAACTGATGACATTCGAGCCCGTCTCCTCTG
GCACAACTCTGTCCAACGCACGACTGGGTCATGTGGCTCCGCCGCCATCC
AAACGCATCTGCATCGGGACTCCAAACTTGGTGCCACCAGTTCCTGTTGC
CACTGCTCCTCCTCCGCCCGCCGAATCTCTTAGCATCGAACAGAATGTGG
GCGACTCGAGCAGTGAGAGCAGCGACAACAGCGTGGTACTACGTCCATCC
ACATCGTCGTCTTCTCTGGTGGCGGCCGCCGAGGGATCTGGGGATAAGCC
CAGCAAGGAAGCAAGCTTTCTAGACCAT
BO06063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1197 | CG3289-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-RA | 1393 | CG3289-RA | 98..1291 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3377178..3377809 | 41..672 | 3145 | 99.8 | Plus |
2L | 23513712 | 2L | 3378154..3378488 | 876..1210 | 1675 | 100 | Plus |
2L | 23513712 | 2L | 3377861..3378070 | 668..877 | 1050 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:47:39 has no hits.
BO06063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:23 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 1..1197 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:48 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 92..1285 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:57 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..1291 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:23 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 92..1285 | 17..1210 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:47 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ptpa-RA | 98..1291 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:47 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
2L | 3377862..3378070 | 669..877 | 100 | -> | Plus |
2L | 3378156..3378488 | 878..1212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:57 Download gff for
BO06063.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3377099..3377126 | 17..44 | 100 | -> | Plus |
arm_2L | 3377182..3377805 | 45..668 | 100 | -> | Plus |
arm_2L | 3377862..3378070 | 669..877 | 100 | -> | Plus |
arm_2L | 3378156..3378488 | 878..1212 | 99 | | Plus |
BO06063.pep Sequence
Translation from 16 to 1228
> BO06063.pep
MASGINQAAGKLPAIAKKVQNLGDMGVWQKSRAFHDLIGYINGTSSAIQG
IKTTDEIFESEMLKKLLRLFDALEKLVEQNPPLEQPQRFGNKAYRDWAQA
MRELLPELLEQLLPDDKKRYQVELGQYLTESFGNATRIDYGTGHELSFLF
FLCSLFKAEILQERDIVSAALRLFNRYLELARQLQRTYNMEPAGSQGVWS
LDDFQFVPFIWGSAQLAVKSPFDPSKFVDEAIITEYKDHFMFISCIDYIC
KVKTGHFGEHSNQLWSITDVPTWAKINAGLVKMYQKEILSKFPVIQHVYF
GELMTFEPVSSGTTLSNARLGHVAPPPSKRICIGTPNLVPPVPVATAPPP
PAESLSIEQNVGDSSSESSDNSVVLRPSTSSSSLVAAAEGSGDKPSKEAS
FLDH
BO06063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ptpa-PA | 398 | CG3289-PA | 1..398 | 1..398 | 2063 | 100 | Plus |
CG2104-PB | 424 | CG2104-PB | 26..338 | 18..325 | 689 | 43.8 | Plus |
CG2104-PA | 424 | CG2104-PA | 26..338 | 18..325 | 689 | 43.8 | Plus |
CG8509-PA | 432 | CG8509-PA | 29..338 | 17..321 | 577 | 39.7 | Plus |