Clone Sequence Records
BO06064.3prime Sequence
815 bp (772 high quality bases) assembled on 2005-12-02
> BO06064.3prime
ATGGTCTAGAAAGCTTGCGAACTGCTCATCCCTGTAATCCACATGATCGC
CGGACTTGAACTTGAATGCTTCCAGGACTTTGATGAATCGCTCCGTCGTT
TGGGCGGGAGTCAGCATGGTCTTGGACTCCCTTTGCTCTCGAAACATGGC
GACCACGGCGGGATCGTGGGCCTCTCGCTGAACCTGGACGGTCATCTGTG
TGTCTATGACGCCGGGCGCGTAGTTCAACACCAGGGTGTCCTCGGCGGAC
TCCTCGGTGGCCAGCACTCGGAAGTACATCTCACGGGCTGCCTTCACCGT
GCAATAGTGTGCCATCGAGGATATAGGTGCAATGGCTGCCAAGGTGCTGA
GATTAACCACCAACTTTGGGATTCCCTTGAAGACGCGCATAAACTCGCAG
TTTAGCGAAATGGCCGAGAAGACATTGGAGTGGTAGTAGCGCTGTAGGAA
GTCGGTATCTCCGATTTCTTTGGCCCTCTTTGACGTATCGCCCACTGTGC
CGGCATTATGAATGACTATGGCTCGCTCGAAATTGTTCTTTCCACCGGAT
GCCTCCAGAATCTTGGTAAAGTCCTCCGTTTTGGCCGTTTCCAGCTCCAG
CGAATAGGTTTGCACGGATAGATCTGGCACTGTGGCGACAATCTCTGCCT
TAGACTCCTGCAAAAGGGTTTGATTGCGTCCCAGAAGCGTCACCATGGAA
CCCTCGGCTTTGATCCGTTTGGCTAACTGCTGGGCGAACTCACGGCCAAT
TCCACGTGATGCACCGGTCACCAGGAGATATGTGCGCTGTTTCAGGTCCA
TGTCGACTGATAACT
BO06064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12117-PA | 786 | Sptr-RA | 1..783 | 801..19 | 3915 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:50:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 1143 | CG12117-RA | 132..915 | 802..19 | 3920 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:50:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8463524..8464307 | 19..802 | 3920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:50:37 has no hits.
BO06064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:55 Download gff for
BO06064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:26 Download gff for
BO06064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12117-PA | 1..786 | 18..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:19 Download gff for
BO06064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 123..920 | 12..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:19:02 Download gff for
BO06064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 123..920 | 12..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:19:02 Download gff for
BO06064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8463519..8464316 | 12..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:19 Download gff for
BO06064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8357552..8358349 | 12..810 | 99 | | Plus |
BO06064.5prime Sequence
815 bp (714 high quality bases) assembled on 2005-12-02
> BO06064.5prime
GAAGTTATCAGTCGACATGGACCTGAAACAGCGCACATATCTCCTGGTGA
CCGGTGCATCACGTGGAATTGGCCGTGAGTTCGCCCAGCAGTTAGCCAAA
CGGATCAAAGCCGAGGGTTCCATGGTGACGCTTCTGGGACGCAATCAAAC
CCTTTTGCAGGAGTCTAAGGCAGAGATTGTCGCCACAGTGCCAGATCTAT
CCGTGCAAACCTATTCGCTGGAGCTGGAAACGGCCAAAACGGAGGACTTT
ACCAAGATTCTGGAGGCATCCGGTGGAAAGAACAATTTCGAGCGAGCCAT
AGTCATTCATAATGCCGGCACAGTGGGCGATACGTCAAAGAGGGCCAAAG
AAATCGGAGATACCGACTTCCTACAGCGCTACTACCACTCCAATGTCTTC
TCGGCCATTTCGCTAAACTGCGAGTTTATGCGCGTCTTCAAGGGAATCCC
AAAGTTGGTGGTTAATCTCAGCACCTTGGCAGCCATTGCACCTATATCCT
CGATGGCACACTATTGCACGGTGAAGGCAGCCCGTGAGATGTACTTCCGA
GTGCTGGCCACCGAGGAGTCCGCCGAGGACACCCTGGTGTTGAACTACGC
GCCCGGCGTCATAGACACACAGATGACCGTCCAGGTTCAGCGAGAGGCCC
ACGATCCCGCCGTGGTCGCCATGTTTCGAGAGCAAAGGGAGTCCAAGACC
ATGCTGACTCCCGCCCAAACGACGGAGCGATTCATCAAAGTCCTGGAAGC
ATTCAAGTTTCAGTCGGGCGATCATGTGGATTACAGGGATGAGCAGTTCG
CAAGCTTTCTAGACC
BO06064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12117-PA | 786 | Sptr-RA | 1..783 | 17..799 | 3840 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 1143 | CG12117-RA | 132..915 | 16..799 | 3875 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8463524..8464307 | 799..16 | 3875 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:20:51 has no hits.
BO06064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:56 Download gff for
BO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-PA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:27 Download gff for
BO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12117-PA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:36 Download gff for
BO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 123..920 | 8..806 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:12 Download gff for
BO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 123..920 | 8..806 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:12 Download gff for
BO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8463519..8464316 | 8..806 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:36 Download gff for
BO06064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8357552..8358349 | 8..806 | 98 | | Minus |
BO06064.complete Sequence
817 bp (817 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630265
> BO06064.complete
GAAGTTATCAGTCGACATGGACCTGAAACAGCGCACATATCTCCTGGTGA
CCGGTGCATCACGTGGAATTGGCCGTGAGTTCGCCCAGCAGTTAGCCAAA
CGGATCAAAGCCGAGGGTTCCATGGTGACGCTTCTGGGACGCAATCAAAC
CCTTTTGCAGGAGTCTAAGGCAGAGATTGTCGCCACAGTGCCAGATCTAT
CCGTGCAAACCTATTCGCTGGAGCTGGAAACGGCCAAAACGGAGGACTTT
ACCAAGATTCTGGAGGCATCCGGTGGAAAGAACAATTTCGAGCGAGCCAT
AGTCATTCATAATGCCGGCACAGTGGGCGATACGTCAAAGAGGGCCAAAG
AAATCGGAGATACCGACTTCCTACAGCGCTACTACCACTCCAATGTCTTC
TCGGCCATTTCGCTAAACTGCGAGTTTATGCGCGTCTTCAAGGGAATCCC
AAAGTTGGTGGTTAATCTCAGCACCTTGGCAGCCATTGCACCTATATCCT
CGATGGCACACTATTGCACGGTGAAGGCAGCCCGTGAGATGTACTTCCGA
GTGCTGGCCACCGAGGAGTCCGCCGAGGACACCCTGGTGTTGAACTACGC
GCCCGGCGTCATAGACACACAGATGACCGTCCAGGTTCAGCGAGAGGCCC
ACGATCCCGCCGTGGTCGCCATGTTTCGAGAGCAAAGGGAGTCCAAGACC
ATGCTGACTCCCGCCCAAACGACGGAGCGATTCATCAAAGTCCTGGAAGC
ATTCAAGTTCAAGTCCGGCGATCATGTGGATTACAGGGATGAGCAGTTCG
CAAGCTTTCTAGACCAT
BO06064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 786 | CG12117-PA | 1..783 | 17..799 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-RA | 1143 | CG12117-RA | 132..915 | 16..799 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8463524..8464307 | 799..16 | 3920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:37 has no hits.
BO06064.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:04 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 1..786 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:24 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 682..1479 | 8..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:32 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 133..915 | 17..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:04 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 682..1479 | 8..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:24 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sptr-RA | 133..915 | 17..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:24 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8463520..8464306 | 17..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:32 Download gff for
BO06064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8357553..8358339 | 17..801 | 99 | | Minus |
BO06064.pep Sequence
Translation from 16 to 817
> BO06064.pep
MDLKQRTYLLVTGASRGIGREFAQQLAKRIKAEGSMVTLLGRNQTLLQES
KAEIVATVPDLSVQTYSLELETAKTEDFTKILEASGGKNNFERAIVIHNA
GTVGDTSKRAKEIGDTDFLQRYYHSNVFSAISLNCEFMRVFKGIPKLVVN
LSTLAAIAPISSMAHYCTVKAAREMYFRVLATEESAEDTLVLNYAPGVID
TQMTVQVQREAHDPAVVAMFREQRESKTMLTPAQTTERFIKVLEAFKFKS
GDHVDYRDEQFASFLDH
BO06064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sptr-PA | 261 | CG12117-PA | 1..261 | 1..261 | 1304 | 100 | Plus |
| CG12116-PA | 273 | CG12116-PA | 6..269 | 1..258 | 252 | 28 | Plus |
