Clone Sequence Records
BO06066.5prime Sequence
380 bp (379 high quality bases) assembled on 2005-12-02
> BO06066.5prime
GAAGTTATCAGTCGACATGAAGCCGAAGAAATCGGCCTTTGCCAATTCAT
CCACGGGATACGGCAGGAACAAGCACGGTAAAGGACACTCTGGCAAGGAT
AAAGTCGAGGGTGGTGGTAAGGGCAAGAGCCGAGACGAGAAGGATAAGCA
TAAGCATGAGCAGAAGGTGGACGAGAAGGATGACAAGGATCTAAATTCCG
GCTTCGGCGACTATCTTCGCACTCCGGAGGCATTTGAAATGATGAAACTC
TTTGTCTTCGCCAATACCATAATGCTAATTGTCACCATGGCCTGGCCGCA
CATCAAGGAGCAATTCTACATGGTTAATCAATGGCTTGAAAGCTTCCGCG
AGGAGCATCAGCAGGCAAGCTTTCTAGACC
BO06066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4468-PA | 351 | CG4468-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..466 | 17..364 | 1740 | 100 | Plus |
| Xport-RA | 949 | CG4468-RA | 119..466 | 17..364 | 1740 | 100 | Plus |
| CG42508-RB | 1029 | CG42508-RB | 119..470 | 17..364 | 1690 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 230..17 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 19914879..19915013 | 364..230 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:11:31 has no hits.
BO06066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:00 Download gff for
BO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:32 Download gff for
BO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:19 Download gff for
BO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..463 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:44 Download gff for
BO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..466 | 17..364 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:44 Download gff for
BO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914879..19915012 | 231..364 | 100 | <- | Minus |
| 3R | 19915081..19915294 | 17..230 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:19 Download gff for
BO06066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740601..15740734 | 231..364 | 100 | <- | Minus |
| arm_3R | 15740803..15741016 | 17..230 | 100 | | Minus |
BO06066.3prime Sequence
380 bp (379 high quality bases) assembled on 2005-12-02
> BO06066.3prime
ATGGTCTAGAAAGCTTGCCTGCTGATGCTCCTCGCGGAAGCTTTCAAGCC
ATTGATTAACCATGTAGAATTGCTCCTTGATGTGCGGCCAGGCCATGGTG
ACAATTAGCATTATGGTATTGGCGAAGACAAAGAGTTTCATCATTTCAAA
TGCCTCCGGAGTGCGAAGATAGTCGCCGAAGCCGGAATTTAGATCCTTGT
CATCCTTCTCGTCCACCTTCTGCTCATGCTTATGCTTATCCTTCTCGTCT
CGGCTCTTGCCCTTACCACCACCCTCGACTTTATCCTTGCCAGAGTGTCC
TTTACCGTGCTTGTTCCTGCCGTATCCCGTGGATGAATTGGCAAAGGCCG
ATTTCTTCGGCTTCATGTCGACTGATAACT
BO06066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:33:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4468-PA | 351 | CG4468-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..466 | 366..19 | 1740 | 100 | Minus |
| Xport-RA | 949 | CG4468-RA | 119..466 | 366..19 | 1740 | 100 | Minus |
| CG42508-RB | 1029 | CG42508-RB | 119..470 | 366..19 | 1690 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 153..366 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 19914879..19915013 | 19..153 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:47:00 has no hits.
BO06066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:38:59 Download gff for
BO06066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 18..366 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:31 Download gff for
BO06066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-PA | 1..351 | 18..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:26 Download gff for
BO06066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..463 | 19..366 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:02 Download gff for
BO06066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..466 | 19..366 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:02 Download gff for
BO06066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19914879..19915012 | 19..152 | 100 | <- | Plus |
| 3R | 19915081..19915294 | 153..366 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:26 Download gff for
BO06066.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740803..15741016 | 153..366 | 100 | | Plus |
| arm_3R | 15740601..15740734 | 19..152 | 100 | <- | Plus |
BO06066.complete Sequence
382 bp (382 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630266
> BO06066.complete
GAAGTTATCAGTCGACATGAAGCCGAAGAAATCGGCCTTTGCCAATTCAT
CCACGGGATACGGCAGGAACAAGCACGGTAAAGGACACTCTGGCAAGGAT
AAAGTCGAGGGTGGTGGTAAGGGCAAGAGCCGAGACGAGAAGGATAAGCA
TAAGCATGAGCAGAAGGTGGACGAGAAGGATGACAAGGATCTAAATTCCG
GCTTCGGCGACTATCTTCGCACTCCGGAGGCATTTGAAATGATGAAACTC
TTTGTCTTCGCCAATACCATAATGCTAATTGTCACCATGGCCTGGCCGCA
CATCAAGGAGCAATTCTACATGGTTAATCAATGGCTTGAAAGCTTCCGCG
AGGAGCATCAGCAGGCAAGCTTTCTAGACCAT
BO06066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xport-RA | 351 | CG4468-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42508-RA | 949 | CG42508-RA | 119..466 | 17..364 | 1740 | 100 | Plus |
| Xport-RA | 949 | CG4468-RA | 119..466 | 17..364 | 1740 | 100 | Plus |
| CG42508-RB | 1029 | CG42508-RB | 119..470 | 17..364 | 1665 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19915081..19915294 | 230..17 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 19914879..19915013 | 364..230 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:07:19 has no hits.
BO06066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:45 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 1..351 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:11 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 116..463 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:55 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 116..463 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:45 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4468-RA | 116..463 | 17..364 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:50 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Xport-RA | 119..466 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:50 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19915081..19915294 | 17..230 | 100 | | Minus |
| 3R | 19914877..19915012 | 231..366 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:55 Download gff for
BO06066.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15740599..15740734 | 231..366 | 98 | <- | Minus |
| arm_3R | 15740803..15741016 | 17..230 | 100 | | Minus |
BO06066.pep Sequence
Translation from 16 to 382
> BO06066.pep
MKPKKSAFANSSTGYGRNKHGKGHSGKDKVEGGGKGKSRDEKDKHKHEQK
VDEKDDKDLNSGFGDYLRTPEAFEMMKLFVFANTIMLIVTMAWPHIKEQF
YMVNQWLESFREEHQQASFLDH
BO06066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Xport-PA | 116 | CG4468-PA | 1..116 | 1..116 | 628 | 100 | Plus |
