Clone BO06067 Report

Search the DGRC for BO06067

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG5597-RA
Protein status:BO06067.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO06067.5prime Sequence

812 bp (811 high quality bases) assembled on 2005-12-02

> BO06067.5prime
GAAGTTATCAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCG
GACTGCTCCACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAG
GACAAGATTATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGA
CTGCGACTACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGT
ACAGAGACGACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATAT
GCCATCCCCGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCAC
GGAGCCGAGCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCG
CCACCACCGGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTC
TCCAGCCACCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGA
GCTGTCCCACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGA
CGAACGTGTATCCCAGGCCCACCATCACGATAATATCCAACGACATGGAC
GTGGTGAAGCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGA
TGGCAGCGCCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCT
ACCAGTGCGTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTG
GCCACGTCCGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCT
GTTTTGTTTTCTGTACTACCTGCTCTGCAAGCTGAAGGTATTGGCCGCAA
GCTTTCTAGACC

BO06067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-PA 783 CG5597-RA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-RA 920 CG5597-RA 106..885 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23888125..23888402 257..534 1390 100 Plus
2R 25286936 2R 23888481..23888742 535..796 1310 100 Plus
2R 25286936 2R 23887872..23888064 64..256 965 100 Plus
2R 25286936 2R 23887078..23887126 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:21:59 has no hits.

BO06067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:02 Download gff for BO06067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-PA 1..783 17..800 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:35 Download gff for BO06067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-PA 1..783 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:39 Download gff for BO06067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 102..888 13..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:21 Download gff for BO06067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 102..888 13..800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:21 Download gff for BO06067.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23887074..23887126 13..65 96 -> Plus
2R 23887874..23888064 66..256 100 -> Plus
2R 23888125..23888402 257..534 100 -> Plus
2R 23888481..23888745 535..800 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:39 Download gff for BO06067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19775397..19775587 66..256 100 -> Plus
arm_2R 19774597..19774649 13..65 96 -> Plus
arm_2R 19775648..19775925 257..534 100 -> Plus
arm_2R 19776004..19776268 535..800 99   Plus

BO06067.3prime Sequence

812 bp (811 high quality bases) assembled on 2005-12-02

> BO06067.3prime
ATGGTCTAGAAAGCTTGCGGCCAATACCTTCAGCTTGCAGAGCAGGTAGT
ACAGAAAACAAAACAGCCACAGGCTGAAGTCGACGTGGCTCCTGCCCGCC
GCCGCGGACGTGGCCACCGTGGTCAGGTTCTTGCCGTATCCCTCGAAGGA
CACCACGCACTGGTAGGCATCGGGATCGTCGTCGGTGTCGTAGGCCGCCA
CCACGGCGCTGCCATCGAAGTATCCCTCCTCGTTCTCGTACACCATGGGC
TCCCGCTTCACCACGTCCATGTCGTTGGATATTATCGTGATGGTGGGCCT
GGGATACACGTTCGTCACGGTGCAGTTCAGCTGCGTCTCATTGTGGATCG
TCTTGTGGGACAGCTCCAGGGTGTAGTTCCTCAGGTCTATGACCTGAACC
CTCTGGTGGCTGGAGAAGGTGTTCAGCGAGGTCTGCACCACGCACTTGTA
GTCGCCGGTGGTGGCGATCGTGGGGTTGATCAAAGCCAGCGAGCTGTACT
GCTTGCTCGGCTCCGTGGAGCTCTCATAGGTGCTGTCAATCTCGTTCCTG
AACTCGGGGATGGCATATGGAGGTGTTCCGAAGATCCACTGGTATATGGA
CTTGTCGTCTCTGTACCATTTGACGGTGATGAACTTCGGGCTCTCCTCCA
CCTCGTAGTCGCAGTCCAGGATCGTGGGCTCCATCTCCTCGTTCTGAAGG
ACTATAATCTTGTCCTCGGACTCATCCCTCGTGGGATAGCATAGCGCATC
TCTGTGGAGCAGTCCGATGGCCAGAATGGCGATCAGCAGGGTATCCATGT
CGACTGATAACT

BO06067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-PA 783 CG5597-RA 1..780 798..19 3900 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-RA 920 CG5597-RA 106..885 798..19 3900 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23888125..23888402 558..281 1390 100 Minus
2R 25286936 2R 23888481..23888742 280..19 1310 100 Minus
2R 25286936 2R 23887872..23888064 751..559 965 100 Minus
2R 25286936 2R 23887078..23887126 798..750 245 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:02:02 has no hits.

BO06067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:01 Download gff for BO06067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-PA 1..783 15..798 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:34 Download gff for BO06067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-PA 1..783 15..798 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:38 Download gff for BO06067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 102..888 15..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:16 Download gff for BO06067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 102..888 15..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:16 Download gff for BO06067.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23887074..23887126 750..802 96 -> Minus
2R 23887874..23888064 559..749 100 -> Minus
2R 23888125..23888402 281..558 100 -> Minus
2R 23888481..23888745 15..280 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:38 Download gff for BO06067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19774597..19774649 750..802 96 -> Minus
arm_2R 19775397..19775587 559..749 100 -> Minus
arm_2R 19775648..19775925 281..558 100 -> Minus
arm_2R 19776004..19776268 15..280 99   Minus

BO06067.complete Sequence

814 bp (814 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630267

> BO06067.complete
GAAGTTATCAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCG
GACTGCTCCACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAG
GACAAGATTATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGA
CTGCGACTACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGT
ACAGAGACGACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATAT
GCCATCCCCGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCAC
GGAGCCGAGCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCG
CCACCACCGGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTC
TCCAGCCACCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGA
GCTGTCCCACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGA
CGAACGTGTATCCCAGGCCCACCATCACGATAATATCCAACGACATGGAC
GTGGTGAAGCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGA
TGGCAGCGCCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCT
ACCAGTGCGTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTG
GCCACGTCCGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCT
GTTTTGTTTTCTGTACTACCTGCTCTGCAAGCTGAAGGTATTGGCCGCAA
GCTTTCTAGACCAT

BO06067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-RA 783 CG5597-PA 1..780 17..796 3900 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-RA 920 CG5597-RA 106..885 17..796 3900 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23888125..23888402 257..534 1390 100 Plus
2R 25286936 2R 23888481..23888742 535..796 1310 100 Plus
2R 25286936 2R 23887872..23888064 64..256 965 100 Plus
2R 25286936 2R 23887078..23887126 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:38:24 has no hits.

BO06067.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:07 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 1..783 17..800 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:26 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 101..887 13..800 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:36 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 106..885 17..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:07 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 101..887 13..800 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:27 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
CG5597-RA 106..885 17..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:27 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23888125..23888402 257..534 100 -> Plus
2R 23888481..23888742 535..798 99   Plus
2R 23887078..23887126 17..65 100 -> Plus
2R 23887874..23888064 66..256 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:36 Download gff for BO06067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19774601..19774649 17..65 100 -> Plus
arm_2R 19775397..19775587 66..256 100 -> Plus
arm_2R 19775648..19775925 257..534 100 -> Plus
arm_2R 19776004..19776265 535..798 99   Plus

BO06067.pep Sequence

Translation from 16 to 814

> BO06067.pep
MDTLLIAILAIGLLHRDALCYPTRDESEDKIIVLQNEEMEPTILDCDYEV
EESPKFITVKWYRDDKSIYQWIFGTPPYAIPEFRNEIDSTYESSTEPSKQ
YSSLALINPTIATTGDYKCVVQTSLNTFSSHQRVQVIDLRNYTLELSHKT
IHNETQLNCTVTNVYPRPTITIISNDMDVVKREPMVYENEEGYFDGSAVV
AAYDTDDDPDAYQCVVSFEGYGKNLTTVATSAAAGRSHVDFSLWLFCFLY
YLLCKLKVLAASFLDH

BO06067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5597-PA 260 CG5597-PA 1..260 1..260 1373 100 Plus
CG13532-PA 263 CG13532-PA 39..177 33..173 168 27.6 Plus