Clone Sequence Records
BO06067.5prime Sequence
812 bp (811 high quality bases) assembled on 2005-12-02
> BO06067.5prime
GAAGTTATCAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCG
GACTGCTCCACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAG
GACAAGATTATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGA
CTGCGACTACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGT
ACAGAGACGACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATAT
GCCATCCCCGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCAC
GGAGCCGAGCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCG
CCACCACCGGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTC
TCCAGCCACCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGA
GCTGTCCCACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGA
CGAACGTGTATCCCAGGCCCACCATCACGATAATATCCAACGACATGGAC
GTGGTGAAGCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGA
TGGCAGCGCCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCT
ACCAGTGCGTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTG
GCCACGTCCGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCT
GTTTTGTTTTCTGTACTACCTGCTCTGCAAGCTGAAGGTATTGGCCGCAA
GCTTTCTAGACC
BO06067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-PA | 783 | CG5597-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 920 | CG5597-RA | 106..885 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23888125..23888402 | 257..534 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 23888481..23888742 | 535..796 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 23887872..23888064 | 64..256 | 965 | 100 | Plus |
2R | 25286936 | 2R | 23887078..23887126 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:21:59 has no hits.
BO06067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:02 Download gff for
BO06067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:35 Download gff for
BO06067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:39 Download gff for
BO06067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..888 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:07:21 Download gff for
BO06067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..888 | 13..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:07:21 Download gff for
BO06067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23887074..23887126 | 13..65 | 96 | -> | Plus |
2R | 23887874..23888064 | 66..256 | 100 | -> | Plus |
2R | 23888125..23888402 | 257..534 | 100 | -> | Plus |
2R | 23888481..23888745 | 535..800 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:39 Download gff for
BO06067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19775397..19775587 | 66..256 | 100 | -> | Plus |
arm_2R | 19774597..19774649 | 13..65 | 96 | -> | Plus |
arm_2R | 19775648..19775925 | 257..534 | 100 | -> | Plus |
arm_2R | 19776004..19776268 | 535..800 | 99 | | Plus |
BO06067.3prime Sequence
812 bp (811 high quality bases) assembled on 2005-12-02
> BO06067.3prime
ATGGTCTAGAAAGCTTGCGGCCAATACCTTCAGCTTGCAGAGCAGGTAGT
ACAGAAAACAAAACAGCCACAGGCTGAAGTCGACGTGGCTCCTGCCCGCC
GCCGCGGACGTGGCCACCGTGGTCAGGTTCTTGCCGTATCCCTCGAAGGA
CACCACGCACTGGTAGGCATCGGGATCGTCGTCGGTGTCGTAGGCCGCCA
CCACGGCGCTGCCATCGAAGTATCCCTCCTCGTTCTCGTACACCATGGGC
TCCCGCTTCACCACGTCCATGTCGTTGGATATTATCGTGATGGTGGGCCT
GGGATACACGTTCGTCACGGTGCAGTTCAGCTGCGTCTCATTGTGGATCG
TCTTGTGGGACAGCTCCAGGGTGTAGTTCCTCAGGTCTATGACCTGAACC
CTCTGGTGGCTGGAGAAGGTGTTCAGCGAGGTCTGCACCACGCACTTGTA
GTCGCCGGTGGTGGCGATCGTGGGGTTGATCAAAGCCAGCGAGCTGTACT
GCTTGCTCGGCTCCGTGGAGCTCTCATAGGTGCTGTCAATCTCGTTCCTG
AACTCGGGGATGGCATATGGAGGTGTTCCGAAGATCCACTGGTATATGGA
CTTGTCGTCTCTGTACCATTTGACGGTGATGAACTTCGGGCTCTCCTCCA
CCTCGTAGTCGCAGTCCAGGATCGTGGGCTCCATCTCCTCGTTCTGAAGG
ACTATAATCTTGTCCTCGGACTCATCCCTCGTGGGATAGCATAGCGCATC
TCTGTGGAGCAGTCCGATGGCCAGAATGGCGATCAGCAGGGTATCCATGT
CGACTGATAACT
BO06067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-PA | 783 | CG5597-RA | 1..780 | 798..19 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 920 | CG5597-RA | 106..885 | 798..19 | 3900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23888125..23888402 | 558..281 | 1390 | 100 | Minus |
2R | 25286936 | 2R | 23888481..23888742 | 280..19 | 1310 | 100 | Minus |
2R | 25286936 | 2R | 23887872..23888064 | 751..559 | 965 | 100 | Minus |
2R | 25286936 | 2R | 23887078..23887126 | 798..750 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:02:02 has no hits.
BO06067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:01 Download gff for
BO06067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:34 Download gff for
BO06067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-PA | 1..783 | 15..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:38 Download gff for
BO06067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..888 | 15..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:16 Download gff for
BO06067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 102..888 | 15..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:16 Download gff for
BO06067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23887074..23887126 | 750..802 | 96 | -> | Minus |
2R | 23887874..23888064 | 559..749 | 100 | -> | Minus |
2R | 23888125..23888402 | 281..558 | 100 | -> | Minus |
2R | 23888481..23888745 | 15..280 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:38 Download gff for
BO06067.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19774597..19774649 | 750..802 | 96 | -> | Minus |
arm_2R | 19775397..19775587 | 559..749 | 100 | -> | Minus |
arm_2R | 19775648..19775925 | 281..558 | 100 | -> | Minus |
arm_2R | 19776004..19776268 | 15..280 | 99 | | Minus |
BO06067.complete Sequence
814 bp (814 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630267
> BO06067.complete
GAAGTTATCAGTCGACATGGATACCCTGCTGATCGCCATTCTGGCCATCG
GACTGCTCCACAGAGATGCGCTATGCTATCCCACGAGGGATGAGTCCGAG
GACAAGATTATAGTCCTTCAGAACGAGGAGATGGAGCCCACGATCCTGGA
CTGCGACTACGAGGTGGAGGAGAGCCCGAAGTTCATCACCGTCAAATGGT
ACAGAGACGACAAGTCCATATACCAGTGGATCTTCGGAACACCTCCATAT
GCCATCCCCGAGTTCAGGAACGAGATTGACAGCACCTATGAGAGCTCCAC
GGAGCCGAGCAAGCAGTACAGCTCGCTGGCTTTGATCAACCCCACGATCG
CCACCACCGGCGACTACAAGTGCGTGGTGCAGACCTCGCTGAACACCTTC
TCCAGCCACCAGAGGGTTCAGGTCATAGACCTGAGGAACTACACCCTGGA
GCTGTCCCACAAGACGATCCACAATGAGACGCAGCTGAACTGCACCGTGA
CGAACGTGTATCCCAGGCCCACCATCACGATAATATCCAACGACATGGAC
GTGGTGAAGCGGGAGCCCATGGTGTACGAGAACGAGGAGGGATACTTCGA
TGGCAGCGCCGTGGTGGCGGCCTACGACACCGACGACGATCCCGATGCCT
ACCAGTGCGTGGTGTCCTTCGAGGGATACGGCAAGAACCTGACCACGGTG
GCCACGTCCGCGGCGGCGGGCAGGAGCCACGTCGACTTCAGCCTGTGGCT
GTTTTGTTTTCTGTACTACCTGCTCTGCAAGCTGAAGGTATTGGCCGCAA
GCTTTCTAGACCAT
BO06067.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 783 | CG5597-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-RA | 920 | CG5597-RA | 106..885 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23888125..23888402 | 257..534 | 1390 | 100 | Plus |
2R | 25286936 | 2R | 23888481..23888742 | 535..796 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 23887872..23888064 | 64..256 | 965 | 100 | Plus |
2R | 25286936 | 2R | 23887078..23887126 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:38:24 has no hits.
BO06067.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:07 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 1..783 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:26 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 101..887 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:36 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 106..885 | 17..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:07 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 101..887 | 13..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:27 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5597-RA | 106..885 | 17..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:27 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23888125..23888402 | 257..534 | 100 | -> | Plus |
2R | 23888481..23888742 | 535..798 | 99 | | Plus |
2R | 23887078..23887126 | 17..65 | 100 | -> | Plus |
2R | 23887874..23888064 | 66..256 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:36 Download gff for
BO06067.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19774601..19774649 | 17..65 | 100 | -> | Plus |
arm_2R | 19775397..19775587 | 66..256 | 100 | -> | Plus |
arm_2R | 19775648..19775925 | 257..534 | 100 | -> | Plus |
arm_2R | 19776004..19776265 | 535..798 | 99 | | Plus |
BO06067.pep Sequence
Translation from 16 to 814
> BO06067.pep
MDTLLIAILAIGLLHRDALCYPTRDESEDKIIVLQNEEMEPTILDCDYEV
EESPKFITVKWYRDDKSIYQWIFGTPPYAIPEFRNEIDSTYESSTEPSKQ
YSSLALINPTIATTGDYKCVVQTSLNTFSSHQRVQVIDLRNYTLELSHKT
IHNETQLNCTVTNVYPRPTITIISNDMDVVKREPMVYENEEGYFDGSAVV
AAYDTDDDPDAYQCVVSFEGYGKNLTTVATSAAAGRSHVDFSLWLFCFLY
YLLCKLKVLAASFLDH
BO06067.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5597-PA | 260 | CG5597-PA | 1..260 | 1..260 | 1373 | 100 | Plus |
CG13532-PA | 263 | CG13532-PA | 39..177 | 33..173 | 168 | 27.6 | Plus |