Clone Sequence Records
BO06068.3prime Sequence
845 bp (770 high quality bases) assembled on 2005-12-02
> BO06068.3prime
ATGGTCTAGAAAGCTTGCGTGCTGGGGCACGTGGAACTGCTTCTGCAGCC
TTACATGGGTGGAGGCCACCGCCTTGAATGGATGTTTGACCGTTTGTCTG
CTGGGCTTCGAAGGAGCAGAAGTGGCACTGGCACTGGTCGATGGCGTGGC
TATATCCTTGCTGGCAGATCGGATCTTGGCCCCAAAAACATTCTCCCGCG
GAGGAACCTGGTTGCCCGGCTGCGTGGGTTCCCTCTCGTCATCCGTTGCC
GTTCCAGATTCCTCGTCCTCTTCGCCACTTTGCTCGGTTTCCTCATCTTC
ATCATCTTCCTCTTCATCCTGCTCGTCGGTTTCATCTTCGGGTTCTGTTT
TACTTCCATGATTGATTCCGGCTCCCGTCAGATTCCTATTGCTCCTGGAC
AACTTCGGGCGCCTCTTGAGCGGACTGACCAGGTGCTCGTGCTCCAAGCT
ATCCATCGACTGGGAGCGCAGTCCCTTTTTGAGTGCAGTTTTCCTGGAAG
CCAGCTCTTCTTTGGTCTTCATGAGTTTCTGAAACTCAATGAAATCGTCG
CGCTCATCAATGGTTCCAATATCATAGTAGCTTGCGCTGAGTATCTCCAA
TGCCTTGGTGTGCTGTTTCATGGCGATCAGTATAAAATCGCTGATTATCT
GCTTTAAGTCGCGCAACTTCCGCTGCTCGAAGTTGCCAATAATGTCGTCT
ATCTCCTTGTTTGTGCGCTGCACCTCCATTTTGGCCTTAAACAGCTCCGA
ATCGGCGGCACTATTGTTCGCAGAAAACTTTGACTTGAGCTCAAGCATCT
GGCGCTGACGTAGTACCTCCTTATCCCGCGCTATGACAGCCAGTC
BO06068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-PA | 1188 | CG6405-RA | 359..1185 | 845..19 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1326 | CG6405-RA | 393..1219 | 845..19 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12425539..12426010 | 762..291 | 2360 | 100 | Minus |
2L | 23513712 | 2L | 12426059..12426333 | 293..19 | 1375 | 100 | Minus |
2L | 23513712 | 2L | 12425401..12425483 | 845..763 | 415 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 12:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cr1a | 4470 | Cr1a DMCR1A 4470bp | 1431..1457 | 290..316 | 108 | 88.9 | Plus |
BO06068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:03 Download gff for
BO06068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 359..1188 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:37 Download gff for
BO06068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 359..1188 | 18..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:22 Download gff for
BO06068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 393..1223 | 13..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:14 Download gff for
BO06068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 393..1223 | 13..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:14 Download gff for
BO06068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12425401..12425483 | 763..845 | 100 | -> | Minus |
2L | 12425539..12426009 | 292..762 | 100 | -> | Minus |
2L | 12426061..12426337 | 13..291 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:22 Download gff for
BO06068.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12425401..12425483 | 763..845 | 100 | -> | Minus |
arm_2L | 12425539..12426009 | 292..762 | 100 | -> | Minus |
arm_2L | 12426061..12426337 | 13..291 | 98 | | Minus |
BO06068.5prime Sequence
846 bp (704 high quality bases) assembled on 2005-12-02
> BO06068.5prime
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGACGGG
BO06068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-PA | 1188 | CG6405-RA | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:24:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1326 | CG6405-RA | 35..864 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12425539..12425927 | 458..846 | 1945 | 100 | Plus |
2L | 23513712 | 2L | 12425129..12425288 | 157..316 | 800 | 100 | Plus |
2L | 23513712 | 2L | 12425341..12425483 | 315..457 | 715 | 100 | Plus |
2L | 23513712 | 2L | 12424938..12425077 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:24:07 has no hits.
BO06068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:04 Download gff for
BO06068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:38 Download gff for
BO06068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-PA | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:42 Download gff for
BO06068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..864 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:22 Download gff for
BO06068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..864 | 17..846 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:22 Download gff for
BO06068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12424938..12425077 | 17..156 | 100 | -> | Plus |
2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
2L | 12425539..12425927 | 458..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:42 Download gff for
BO06068.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12425539..12425927 | 458..846 | 100 | | Plus |
arm_2L | 12424938..12425077 | 17..156 | 100 | -> | Plus |
arm_2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
arm_2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
BO06068.complete Sequence
1219 bp (1219 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630268
> BO06068.complete
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGACGGGAGCC
GGAATCAATCATGGAAGTAAAACAGAACCCGAAGATGAAACCGACGAGCA
GGATGAAGAGGAAGATGATGAAGATGAGGAAACCGAGCAAAGTGGCGAAG
AGGACGAGGAATCTGGAACGGCAACGGATGACGAGAGGGAACCCACGCAG
CCGGGCAACCAGGTTCCTCCGCGGGAGAATGTTTTTGGGGCCAAGATCCG
ATCTGCCAGCAAGGATATAGCCACGCCATCGACCAGTGCCAGTGCCACTT
CTGCTCCTTCGAAGCCCAGCAGACAAACGGTCAAACATCCATTCAAGGCG
GTGGCCTCCACCCATGTAAGGCTGCAGAAGCAGTTCCACGTGCCCCAGCA
CGCAAGCTTTCTAGACCAT
BO06068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1188 | CG6405-PA | 1..1185 | 17..1201 | 5925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-RA | 1326 | CG6405-RA | 35..1219 | 17..1201 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12425539..12426010 | 458..929 | 2360 | 100 | Plus |
2L | 23513712 | 2L | 12426059..12426333 | 927..1201 | 1375 | 100 | Plus |
2L | 23513712 | 2L | 12425129..12425288 | 157..316 | 800 | 100 | Plus |
2L | 23513712 | 2L | 12425341..12425483 | 315..457 | 715 | 100 | Plus |
2L | 23513712 | 2L | 12424938..12425077 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:18:13 has no hits.
BO06068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:08 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 1..1188 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:27 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..1223 | 17..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:22 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 41..1219 | 23..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:09 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 35..1223 | 17..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:29 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6405-RA | 41..1219 | 23..1203 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:29 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12424944..12425077 | 23..156 | 100 | -> | Plus |
2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
2L | 12425539..12426009 | 458..928 | 100 | -> | Plus |
2L | 12426061..12426333 | 929..1203 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:22 Download gff for
BO06068.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12425129..12425288 | 157..316 | 100 | -> | Plus |
arm_2L | 12425343..12425483 | 317..457 | 100 | -> | Plus |
arm_2L | 12424944..12425077 | 23..156 | 100 | -> | Plus |
arm_2L | 12425539..12426009 | 458..928 | 100 | -> | Plus |
arm_2L | 12426061..12426333 | 929..1203 | 99 | | Plus |
BO06068.pep Sequence
Translation from 16 to 1219
> BO06068.pep
MFRRGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRD
SFDELAKSVKSYADDEEINESLCQGLKSFTNAVTIMGDYMDINVHRLEHK
IVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSANNSAA
DSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTK
ALEILSASYYDIGTIDERDDFIEFQKLMKTKEELASRKTALKKGLRSQSM
DSLEHEHLVSPLKRRPKLSRSNRNLTGAGINHGSKTEPEDETDEQDEEED
DEDEETEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKD
IATPSTSASATSAPSKPSRQTVKHPFKAVASTHVRLQKQFHVPQHASFLD
H
BO06068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6405-PA | 395 | CG6405-PA | 1..395 | 1..395 | 1997 | 100 | Plus |