Clone BO06068 Report

Search the DGRC for BO06068

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG6405-RA
Protein status:BO06068.pep: validated full length
Sequenced Size:1219

Clone Sequence Records

BO06068.3prime Sequence

845 bp (770 high quality bases) assembled on 2005-12-02

> BO06068.3prime
ATGGTCTAGAAAGCTTGCGTGCTGGGGCACGTGGAACTGCTTCTGCAGCC
TTACATGGGTGGAGGCCACCGCCTTGAATGGATGTTTGACCGTTTGTCTG
CTGGGCTTCGAAGGAGCAGAAGTGGCACTGGCACTGGTCGATGGCGTGGC
TATATCCTTGCTGGCAGATCGGATCTTGGCCCCAAAAACATTCTCCCGCG
GAGGAACCTGGTTGCCCGGCTGCGTGGGTTCCCTCTCGTCATCCGTTGCC
GTTCCAGATTCCTCGTCCTCTTCGCCACTTTGCTCGGTTTCCTCATCTTC
ATCATCTTCCTCTTCATCCTGCTCGTCGGTTTCATCTTCGGGTTCTGTTT
TACTTCCATGATTGATTCCGGCTCCCGTCAGATTCCTATTGCTCCTGGAC
AACTTCGGGCGCCTCTTGAGCGGACTGACCAGGTGCTCGTGCTCCAAGCT
ATCCATCGACTGGGAGCGCAGTCCCTTTTTGAGTGCAGTTTTCCTGGAAG
CCAGCTCTTCTTTGGTCTTCATGAGTTTCTGAAACTCAATGAAATCGTCG
CGCTCATCAATGGTTCCAATATCATAGTAGCTTGCGCTGAGTATCTCCAA
TGCCTTGGTGTGCTGTTTCATGGCGATCAGTATAAAATCGCTGATTATCT
GCTTTAAGTCGCGCAACTTCCGCTGCTCGAAGTTGCCAATAATGTCGTCT
ATCTCCTTGTTTGTGCGCTGCACCTCCATTTTGGCCTTAAACAGCTCCGA
ATCGGCGGCACTATTGTTCGCAGAAAACTTTGACTTGAGCTCAAGCATCT
GGCGCTGACGTAGTACCTCCTTATCCCGCGCTATGACAGCCAGTC

BO06068.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-PA 1188 CG6405-RA 359..1185 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1326 CG6405-RA 393..1219 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12425539..12426010 762..291 2360 100 Minus
2L 23513712 2L 12426059..12426333 293..19 1375 100 Minus
2L 23513712 2L 12425401..12425483 845..763 415 100 Minus
Blast to na_te.dros performed 2015-02-13 12:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cr1a 4470 Cr1a DMCR1A 4470bp 1431..1457 290..316 108 88.9 Plus

BO06068.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:03 Download gff for BO06068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 359..1188 18..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:37 Download gff for BO06068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 359..1188 18..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:22 Download gff for BO06068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 393..1223 13..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:14 Download gff for BO06068.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 393..1223 13..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:14 Download gff for BO06068.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12425401..12425483 763..845 100 -> Minus
2L 12425539..12426009 292..762 100 -> Minus
2L 12426061..12426337 13..291 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:22 Download gff for BO06068.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12425401..12425483 763..845 100 -> Minus
arm_2L 12425539..12426009 292..762 100 -> Minus
arm_2L 12426061..12426337 13..291 98   Minus

BO06068.5prime Sequence

846 bp (704 high quality bases) assembled on 2005-12-02

> BO06068.5prime
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGACGGG

BO06068.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-PA 1188 CG6405-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1326 CG6405-RA 35..864 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12425539..12425927 458..846 1945 100 Plus
2L 23513712 2L 12425129..12425288 157..316 800 100 Plus
2L 23513712 2L 12425341..12425483 315..457 715 100 Plus
2L 23513712 2L 12424938..12425077 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:24:07 has no hits.

BO06068.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:04 Download gff for BO06068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:38 Download gff for BO06068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:42 Download gff for BO06068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..864 17..846 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:22 Download gff for BO06068.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..864 17..846 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:22 Download gff for BO06068.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12424938..12425077 17..156 100 -> Plus
2L 12425129..12425288 157..316 100 -> Plus
2L 12425343..12425483 317..457 100 -> Plus
2L 12425539..12425927 458..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:42 Download gff for BO06068.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12425539..12425927 458..846 100   Plus
arm_2L 12424938..12425077 17..156 100 -> Plus
arm_2L 12425129..12425288 157..316 100 -> Plus
arm_2L 12425343..12425483 317..457 100 -> Plus

BO06068.complete Sequence

1219 bp (1219 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630268

> BO06068.complete
GAAGTTATCAGTCGACATGTTTCGTCGTGGAAAACTATCCTTTCTAAACA
CCAAAGATGACCGTGTTAAAATAATAAACGAGCGCATAAACATAACAGAA
AGGCATCTAATGGAGATGTGCTCTTCGTTTGCTTTGGTAACGCGGAAAAT
GGCCAAATATCGGGACTCCTTTGATGAGTTGGCCAAGAGTGTGAAGAGCT
ACGCCGACGACGAGGAAATCAACGAGAGTCTCTGTCAGGGACTGAAGAGC
TTCACCAACGCGGTTACCATAATGGGTGATTACATGGACATCAATGTACA
CCGATTGGAACACAAGATTGTCAACGAGTTGGCGCAATTCGAGCAGCTTT
GCAAGTCCACAAGGGACAATCTTCGACTGGCTGTCATAGCGCGGGATAAG
GAGGTACTACGTCAGCGCCAGATGCTTGAGCTCAAGTCAAAGTTTTCTGC
GAACAATAGTGCCGCCGATTCGGAGCTGTTTAAGGCCAAAATGGAGGTGC
AGCGCACAAACAAGGAGATAGACGACATTATTGGCAACTTCGAGCAGCGG
AAGTTGCGCGACTTAAAGCAGATAATCAGCGATTTTATACTGATCGCCAT
GAAACAGCACACCAAGGCATTGGAGATACTCAGCGCAAGCTACTATGATA
TTGGAACCATTGATGAGCGCGACGATTTCATTGAGTTTCAGAAACTCATG
AAGACCAAAGAAGAGCTGGCTTCCAGGAAAACTGCACTCAAAAAGGGACT
GCGCTCCCAGTCGATGGATAGCTTGGAGCACGAGCACCTGGTCAGTCCGC
TCAAGAGGCGCCCGAAGTTGTCCAGGAGCAATAGGAATCTGACGGGAGCC
GGAATCAATCATGGAAGTAAAACAGAACCCGAAGATGAAACCGACGAGCA
GGATGAAGAGGAAGATGATGAAGATGAGGAAACCGAGCAAAGTGGCGAAG
AGGACGAGGAATCTGGAACGGCAACGGATGACGAGAGGGAACCCACGCAG
CCGGGCAACCAGGTTCCTCCGCGGGAGAATGTTTTTGGGGCCAAGATCCG
ATCTGCCAGCAAGGATATAGCCACGCCATCGACCAGTGCCAGTGCCACTT
CTGCTCCTTCGAAGCCCAGCAGACAAACGGTCAAACATCCATTCAAGGCG
GTGGCCTCCACCCATGTAAGGCTGCAGAAGCAGTTCCACGTGCCCCAGCA
CGCAAGCTTTCTAGACCAT

BO06068.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1188 CG6405-PA 1..1185 17..1201 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-RA 1326 CG6405-RA 35..1219 17..1201 5925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12425539..12426010 458..929 2360 100 Plus
2L 23513712 2L 12426059..12426333 927..1201 1375 100 Plus
2L 23513712 2L 12425129..12425288 157..316 800 100 Plus
2L 23513712 2L 12425341..12425483 315..457 715 100 Plus
2L 23513712 2L 12424938..12425077 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:18:13 has no hits.

BO06068.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:08 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 1..1188 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:27 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..1223 17..1207 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:22 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 41..1219 23..1203 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:09 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 35..1223 17..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:29 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
CG6405-RA 41..1219 23..1203 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:29 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12424944..12425077 23..156 100 -> Plus
2L 12425129..12425288 157..316 100 -> Plus
2L 12425343..12425483 317..457 100 -> Plus
2L 12425539..12426009 458..928 100 -> Plus
2L 12426061..12426333 929..1203 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:22 Download gff for BO06068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12425129..12425288 157..316 100 -> Plus
arm_2L 12425343..12425483 317..457 100 -> Plus
arm_2L 12424944..12425077 23..156 100 -> Plus
arm_2L 12425539..12426009 458..928 100 -> Plus
arm_2L 12426061..12426333 929..1203 99   Plus

BO06068.pep Sequence

Translation from 16 to 1219

> BO06068.pep
MFRRGKLSFLNTKDDRVKIINERINITERHLMEMCSSFALVTRKMAKYRD
SFDELAKSVKSYADDEEINESLCQGLKSFTNAVTIMGDYMDINVHRLEHK
IVNELAQFEQLCKSTRDNLRLAVIARDKEVLRQRQMLELKSKFSANNSAA
DSELFKAKMEVQRTNKEIDDIIGNFEQRKLRDLKQIISDFILIAMKQHTK
ALEILSASYYDIGTIDERDDFIEFQKLMKTKEELASRKTALKKGLRSQSM
DSLEHEHLVSPLKRRPKLSRSNRNLTGAGINHGSKTEPEDETDEQDEEED
DEDEETEQSGEEDEESGTATDDEREPTQPGNQVPPRENVFGAKIRSASKD
IATPSTSASATSAPSKPSRQTVKHPFKAVASTHVRLQKQFHVPQHASFLD
H

BO06068.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6405-PA 395 CG6405-PA 1..395 1..395 1997 100 Plus