Clone Sequence Records
BO06072.3prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-02
> BO06072.3prime
ATGGTCTAGAAAGCTTGCCACGCCGCCGTGATCGCCAGCTCCTGCCGATC
CTCCTGCTCCTGCTCCGTCTCCTGCTCCTGCCGCATCCACCAGCGATGAC
TGTCCTCCGGCTGGCTGCTGCGGTGGCGGCGGCGGTGGCTGCATGTACTG
TGGGGGATACTGGTACTGTGGCGGCTGCTCCCCGCCTATGAGTCCAAGTT
TATTTGCAATAATGCCCACGACAACCAGGCCAATCACGCCCATGATGATC
ATCATCTTTAAGTTCTGAAGCCAGAATTTCCTCTTGAGCTTGCCCGCCTG
CTGCTCAAACTGCGAGGCACCCTGCTGCAAGGCATCGGCACGGTCGTCCA
GCTCCGACAGCTTGCTGTCGCGCTCCAGCACCTTCTCCACGTTCGTGCGC
ATGATGTCCACGACCTCATCGACCTGCGCCTGCGTCTGCTGCAGACGCTT
CTGTGCCGCGATCTGCTGCGGATTGTGTGGTCCGCCCACAATCTCGCCAT
CGCCGCCCTCTCCGGCCGGGGCTCCGGCATTGGGTGGTGCATCGCCAGCT
GGTGCAGCGTCCGCCATGTCGACTGATAACT
BO06072.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17248-PA | 552 | n-syb-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
CG17248-PC | 552 | n-syb-RC | 1..549 | 567..19 | 2745 | 100 | Minus |
CG17248-PE | 579 | n-syb-RE | 30..576 | 565..19 | 2735 | 100 | Minus |
CG17248-PB | 579 | n-syb-RB | 30..576 | 565..19 | 2735 | 100 | Minus |
CG17248-PD | 666 | n-syb-RD | 30..392 | 565..203 | 1815 | 100 | Minus |
CG17248-PD | 666 | n-syb-RD | 479..663 | 203..19 | 925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 1109 | CG17248-RF | 483..1032 | 568..19 | 2750 | 100 | Minus |
nSyb-RA | 1387 | CG17248-RA | 480..1029 | 568..19 | 2750 | 100 | Minus |
nSyb-RG | 3027 | CG17248-RG | 559..1105 | 565..19 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1632270..1632454 | 19..203 | 925 | 100 | Plus |
3L | 28110227 | 3L | 1635301..1635461 | 256..416 | 805 | 100 | Plus |
3L | 28110227 | 3L | 1635532..1635684 | 413..565 | 765 | 100 | Plus |
2R | 25286936 | 2R | 10250908..10251119 | 233..444 | 295 | 75.9 | Plus |
3L | 28110227 | 3L | 1635182..1635239 | 200..257 | 275 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:07:41 has no hits.
BO06072.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:11 Download gff for
BO06072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-PC | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:49 Download gff for
BO06072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17248-PC | 1..552 | 15..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:52 Download gff for
BO06072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 474..1038 | 9..575 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:00 Download gff for
BO06072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RA | 474..1038 | 9..575 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:00 Download gff for
BO06072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1632261..1632454 | 9..203 | 97 | <- | Plus |
3L | 1635186..1635237 | 204..255 | 100 | <- | Plus |
3L | 1635301..1635459 | 256..414 | 100 | <- | Plus |
3L | 1635534..1635691 | 415..576 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:52 Download gff for
BO06072.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1635186..1635237 | 204..255 | 100 | <- | Plus |
arm_3L | 1635301..1635459 | 256..414 | 100 | <- | Plus |
arm_3L | 1632261..1632454 | 9..203 | 97 | <- | Plus |
arm_3L | 1635534..1635691 | 415..576 | 96 | | Plus |
BO06072.5prime Sequence
581 bp (580 high quality bases) assembled on 2005-12-02
> BO06072.5prime
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGGCAAGCTTTCTAGACC
BO06072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17248-PA | 552 | n-syb-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG17248-PC | 552 | n-syb-RC | 1..549 | 17..565 | 2745 | 100 | Plus |
CG17248-PE | 579 | n-syb-RE | 30..576 | 19..565 | 2735 | 100 | Plus |
CG17248-PB | 579 | n-syb-RB | 30..576 | 19..565 | 2735 | 100 | Plus |
CG17248-PD | 666 | n-syb-RD | 30..392 | 19..381 | 1815 | 100 | Plus |
CG17248-PD | 666 | n-syb-RD | 479..663 | 381..565 | 925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 1109 | CG17248-RF | 483..1032 | 16..565 | 2750 | 100 | Plus |
nSyb-RA | 1387 | CG17248-RA | 480..1029 | 16..565 | 2750 | 100 | Plus |
nSyb-RG | 3027 | CG17248-RG | 559..1105 | 19..565 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1632270..1632454 | 565..381 | 925 | 100 | Minus |
3L | 28110227 | 3L | 1635301..1635461 | 328..168 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 171..19 | 765 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 351..140 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635182..1635239 | 384..327 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:47:32 has no hits.
BO06072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:12 Download gff for
BO06072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-PC | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:50 Download gff for
BO06072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17248-PC | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:30 Download gff for
BO06072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 474..1038 | 9..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:16 Download gff for
BO06072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RA | 474..1038 | 9..575 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:16 Download gff for
BO06072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1632261..1632454 | 381..575 | 97 | <- | Minus |
3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
3L | 1635534..1635691 | 8..169 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:30 Download gff for
BO06072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1632261..1632454 | 381..575 | 97 | <- | Minus |
arm_3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
arm_3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
arm_3L | 1635534..1635691 | 8..169 | 96 | | Minus |
BO06072.complete Sequence
583 bp (583 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630271
> BO06072.complete
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGGCAAGCTTTCTAGACCAT
BO06072.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 552 | CG17248-PF | 1..549 | 17..565 | 2745 | 100 | Plus |
nSyb-RA | 552 | CG17248-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
nSyb-RG | 579 | CG17248-PG | 30..576 | 19..565 | 2735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-RF | 1109 | CG17248-RF | 483..1032 | 16..565 | 2750 | 100 | Plus |
nSyb-RA | 1387 | CG17248-RA | 480..1029 | 16..565 | 2750 | 100 | Plus |
nSyb-RG | 3027 | CG17248-RG | 559..1105 | 19..565 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1632270..1632454 | 565..381 | 925 | 100 | Minus |
3L | 28110227 | 3L | 1635301..1635461 | 328..168 | 805 | 100 | Minus |
3L | 28110227 | 3L | 1635532..1635684 | 171..19 | 765 | 100 | Minus |
2R | 25286936 | 2R | 10250908..10251119 | 351..140 | 295 | 75.9 | Minus |
3L | 28110227 | 3L | 1635182..1635239 | 384..327 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:49:22 has no hits.
BO06072.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:12 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RC | 1..552 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:32 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 489..1053 | 9..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:20 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RA | 481..1029 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:12 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
n-syb-RC | 450..1014 | 9..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:59 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nSyb-RA | 481..1029 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:59 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1635534..1635686 | 17..169 | 99 | | Minus |
3L | 1632268..1632454 | 381..567 | 98 | <- | Minus |
3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:20 Download gff for
BO06072.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1632268..1632454 | 381..567 | 98 | <- | Minus |
arm_3L | 1635186..1635237 | 329..380 | 100 | <- | Minus |
arm_3L | 1635301..1635459 | 170..328 | 100 | <- | Minus |
arm_3L | 1635534..1635686 | 17..169 | 99 | | Minus |
BO06072.pep Sequence
Translation from 16 to 583
> BO06072.pep
MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD
EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL
QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ
QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGVASFLDH
BO06072.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nSyb-PF | 183 | CG17248-PF | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PA | 183 | CG17248-PA | 1..183 | 1..183 | 951 | 100 | Plus |
nSyb-PG | 192 | CG17248-PG | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PE | 192 | CG17248-PE | 11..192 | 2..183 | 946 | 100 | Plus |
nSyb-PJ | 206 | CG17248-PJ | 1..158 | 1..150 | 626 | 84.2 | Plus |