Clone BO06072 Report

Search the DGRC for BO06072

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptnSyb-RA
Protein status:BO06072.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO06072.3prime Sequence

581 bp (580 high quality bases) assembled on 2005-12-02

> BO06072.3prime
ATGGTCTAGAAAGCTTGCCACGCCGCCGTGATCGCCAGCTCCTGCCGATC
CTCCTGCTCCTGCTCCGTCTCCTGCTCCTGCCGCATCCACCAGCGATGAC
TGTCCTCCGGCTGGCTGCTGCGGTGGCGGCGGCGGTGGCTGCATGTACTG
TGGGGGATACTGGTACTGTGGCGGCTGCTCCCCGCCTATGAGTCCAAGTT
TATTTGCAATAATGCCCACGACAACCAGGCCAATCACGCCCATGATGATC
ATCATCTTTAAGTTCTGAAGCCAGAATTTCCTCTTGAGCTTGCCCGCCTG
CTGCTCAAACTGCGAGGCACCCTGCTGCAAGGCATCGGCACGGTCGTCCA
GCTCCGACAGCTTGCTGTCGCGCTCCAGCACCTTCTCCACGTTCGTGCGC
ATGATGTCCACGACCTCATCGACCTGCGCCTGCGTCTGCTGCAGACGCTT
CTGTGCCGCGATCTGCTGCGGATTGTGTGGTCCGCCCACAATCTCGCCAT
CGCCGCCCTCTCCGGCCGGGGCTCCGGCATTGGGTGGTGCATCGCCAGCT
GGTGCAGCGTCCGCCATGTCGACTGATAACT

BO06072.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17248-PA 552 n-syb-RA 1..549 567..19 2745 100 Minus
CG17248-PC 552 n-syb-RC 1..549 567..19 2745 100 Minus
CG17248-PE 579 n-syb-RE 30..576 565..19 2735 100 Minus
CG17248-PB 579 n-syb-RB 30..576 565..19 2735 100 Minus
CG17248-PD 666 n-syb-RD 30..392 565..203 1815 100 Minus
CG17248-PD 666 n-syb-RD 479..663 203..19 925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 1109 CG17248-RF 483..1032 568..19 2750 100 Minus
nSyb-RA 1387 CG17248-RA 480..1029 568..19 2750 100 Minus
nSyb-RG 3027 CG17248-RG 559..1105 565..19 2735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1632270..1632454 19..203 925 100 Plus
3L 28110227 3L 1635301..1635461 256..416 805 100 Plus
3L 28110227 3L 1635532..1635684 413..565 765 100 Plus
2R 25286936 2R 10250908..10251119 233..444 295 75.9 Plus
3L 28110227 3L 1635182..1635239 200..257 275 98.3 Plus
Blast to na_te.dros performed on 2015-02-10 15:07:41 has no hits.

BO06072.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:11 Download gff for BO06072.3prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-PC 1..552 15..567 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:49 Download gff for BO06072.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17248-PC 1..552 15..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:57:52 Download gff for BO06072.3prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 474..1038 9..575 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:00 Download gff for BO06072.3prime
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 474..1038 9..575 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:00 Download gff for BO06072.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1632261..1632454 9..203 97 <- Plus
3L 1635186..1635237 204..255 100 <- Plus
3L 1635301..1635459 256..414 100 <- Plus
3L 1635534..1635691 415..576 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:57:52 Download gff for BO06072.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1635186..1635237 204..255 100 <- Plus
arm_3L 1635301..1635459 256..414 100 <- Plus
arm_3L 1632261..1632454 9..203 97 <- Plus
arm_3L 1635534..1635691 415..576 96   Plus

BO06072.5prime Sequence

581 bp (580 high quality bases) assembled on 2005-12-02

> BO06072.5prime
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGGCAAGCTTTCTAGACC

BO06072.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17248-PA 552 n-syb-RA 1..549 17..565 2745 100 Plus
CG17248-PC 552 n-syb-RC 1..549 17..565 2745 100 Plus
CG17248-PE 579 n-syb-RE 30..576 19..565 2735 100 Plus
CG17248-PB 579 n-syb-RB 30..576 19..565 2735 100 Plus
CG17248-PD 666 n-syb-RD 30..392 19..381 1815 100 Plus
CG17248-PD 666 n-syb-RD 479..663 381..565 925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 1109 CG17248-RF 483..1032 16..565 2750 100 Plus
nSyb-RA 1387 CG17248-RA 480..1029 16..565 2750 100 Plus
nSyb-RG 3027 CG17248-RG 559..1105 19..565 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1632270..1632454 565..381 925 100 Minus
3L 28110227 3L 1635301..1635461 328..168 805 100 Minus
3L 28110227 3L 1635532..1635684 171..19 765 100 Minus
2R 25286936 2R 10250908..10251119 351..140 295 75.9 Minus
3L 28110227 3L 1635182..1635239 384..327 275 98.3 Minus
Blast to na_te.dros performed on 2015-02-13 00:47:32 has no hits.

BO06072.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:12 Download gff for BO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-PC 1..552 17..569 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:50 Download gff for BO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17248-PC 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:30 Download gff for BO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 474..1038 9..575 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:16 Download gff for BO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 474..1038 9..575 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:16 Download gff for BO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1632261..1632454 381..575 97 <- Minus
3L 1635186..1635237 329..380 100 <- Minus
3L 1635301..1635459 170..328 100 <- Minus
3L 1635534..1635691 8..169 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:30 Download gff for BO06072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1632261..1632454 381..575 97 <- Minus
arm_3L 1635186..1635237 329..380 100 <- Minus
arm_3L 1635301..1635459 170..328 100 <- Minus
arm_3L 1635534..1635691 8..169 96   Minus

BO06072.complete Sequence

583 bp (583 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630271

> BO06072.complete
GAAGTTATCAGTCGACATGGCGGACGCTGCACCAGCTGGCGATGCACCAC
CCAATGCCGGAGCCCCGGCCGGAGAGGGCGGCGATGGCGAGATTGTGGGC
GGACCACACAATCCGCAGCAGATCGCGGCACAGAAGCGTCTGCAGCAGAC
GCAGGCGCAGGTCGATGAGGTCGTGGACATCATGCGCACGAACGTGGAGA
AGGTGCTGGAGCGCGACAGCAAGCTGTCGGAGCTGGACGACCGTGCCGAT
GCCTTGCAGCAGGGTGCCTCGCAGTTTGAGCAGCAGGCGGGCAAGCTCAA
GAGGAAATTCTGGCTTCAGAACTTAAAGATGATGATCATCATGGGCGTGA
TTGGCCTGGTTGTCGTGGGCATTATTGCAAATAAACTTGGACTCATAGGC
GGGGAGCAGCCGCCACAGTACCAGTATCCCCCACAGTACATGCAGCCACC
GCCGCCGCCACCGCAGCAGCCAGCCGGAGGACAGTCATCGCTGGTGGATG
CGGCAGGAGCAGGAGACGGAGCAGGAGCAGGAGGATCGGCAGGAGCTGGC
GATCACGGCGGCGTGGCAAGCTTTCTAGACCAT

BO06072.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 552 CG17248-PF 1..549 17..565 2745 100 Plus
nSyb-RA 552 CG17248-PA 1..549 17..565 2745 100 Plus
nSyb-RG 579 CG17248-PG 30..576 19..565 2735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-RF 1109 CG17248-RF 483..1032 16..565 2750 100 Plus
nSyb-RA 1387 CG17248-RA 480..1029 16..565 2750 100 Plus
nSyb-RG 3027 CG17248-RG 559..1105 19..565 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1632270..1632454 565..381 925 100 Minus
3L 28110227 3L 1635301..1635461 328..168 805 100 Minus
3L 28110227 3L 1635532..1635684 171..19 765 100 Minus
2R 25286936 2R 10250908..10251119 351..140 295 75.9 Minus
3L 28110227 3L 1635182..1635239 384..327 275 98.3 Minus
Blast to na_te.dros performed on 2014-11-27 19:49:22 has no hits.

BO06072.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:12 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RC 1..552 17..569 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:32 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 489..1053 9..575 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:20 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RA 481..1029 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:12 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
n-syb-RC 450..1014 9..575 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:59 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
nSyb-RA 481..1029 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:59 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1635534..1635686 17..169 99   Minus
3L 1632268..1632454 381..567 98 <- Minus
3L 1635186..1635237 329..380 100 <- Minus
3L 1635301..1635459 170..328 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:20 Download gff for BO06072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1632268..1632454 381..567 98 <- Minus
arm_3L 1635186..1635237 329..380 100 <- Minus
arm_3L 1635301..1635459 170..328 100 <- Minus
arm_3L 1635534..1635686 17..169 99   Minus

BO06072.pep Sequence

Translation from 16 to 583

> BO06072.pep
MADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVD
EVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWL
QNLKMMIIMGVIGLVVVGIIANKLGLIGGEQPPQYQYPPQYMQPPPPPPQ
QPAGGQSSLVDAAGAGDGAGAGGSAGAGDHGGVASFLDH

BO06072.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:26
Subject Length Description Subject Range Query Range Score Percent Strand
nSyb-PF 183 CG17248-PF 1..183 1..183 951 100 Plus
nSyb-PA 183 CG17248-PA 1..183 1..183 951 100 Plus
nSyb-PG 192 CG17248-PG 11..192 2..183 946 100 Plus
nSyb-PE 192 CG17248-PE 11..192 2..183 946 100 Plus
nSyb-PJ 206 CG17248-PJ 1..158 1..150 626 84.2 Plus