Clone Sequence Records
BO06073.3prime Sequence
875 bp (795 high quality bases) assembled on 2005-12-02
> BO06073.3prime
ATGGTCTAGAAAGCTTGCTTGCTTTTTATTAAACTTTAGCACTGAGAAAA
TTTTCCGCATTAGTGCCGGTCCGTTCCAGTAGCCGTTCATCATCAGCTTC
CAGTAGAGCACCGGCATCAGCTCCTTCTTCATAAAGAACATGGAGTACCT
CTCCTTGGACTGGTCCAATGGAAAGGTCTCCACGGGGGTGAGGTTGTAAT
CAAACTCAGCCAGGATGCAGGAGCTGTAGCCGGTGACGATGGGGCAGGAC
GAGTATCCATCGTAGATATCCGTTGGGGCTTTGCCCTCGATCGCCGCCAT
TACGTTTTTGAACACAACCGGTGATTGGGCGGCTGCCGCCGCGGCCGTCT
TCGAGTTGGGACTGGACGCCGAATCGCCGATGGCGAACACGTTGCTGTAC
TTGTTGTGCTGCAGCGTCAACTGGTCGACGTCCACAAAGCCAGTGGGGGT
TACCAGTTTCTTGCAGTTGGCCACCACATCCGGAGTGCTCATCGGCGGAG
TCACATGAAGCATGGAGTACGTTTCCTCATAGTGAACTCCTGGTTTGGCG
AGATCCTCGAACACGGCTATATTATCTTTATGTCTCACTTCAACGAGATT
TCTTTGAACATTAAGCGTGATATTTCTCCTCTTGATCAGTTTCATCAGGG
CCTCTGCGTAATGCTTAACACCAAAAATCACGGGAAGCGATGTATTGTAG
ATGATATTGACGTTGTCGCGACGACCCATCTTCCTAAAGTAGTGCTCAGA
TATATAGGCGATTTTCTGCGGTGCACCTGCACACTTAATGGGACAATTGG
GAAACGTGAATATAGCATTTCCTTTTGTGGTCCTGCGCAGACATTCGTAC
ACATGATCCACGTACTTGGGCGAGT
BO06073.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-PB | 1374 | CG14997-RB | 515..1371 | 875..19 | 4235 | 99.7 | Minus |
CG14997-PA | 1374 | CG14997-RA | 515..1371 | 875..19 | 4235 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-RA | 1605 | CG14997-RA | 603..1459 | 875..19 | 4255 | 99.8 | Minus |
CG14997-RB | 1676 | CG14997-RB | 674..1530 | 875..19 | 4255 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:26:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4242141..4242457 | 335..19 | 1585 | 100 | Minus |
3L | 28110227 | 3L | 4241492..4241703 | 731..520 | 1060 | 100 | Minus |
3L | 28110227 | 3L | 4241903..4242090 | 520..333 | 940 | 100 | Minus |
3L | 28110227 | 3L | 4241290..4241435 | 875..730 | 700 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:26:37 has no hits.
BO06073.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:13 Download gff for
BO06073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-PB | 515..1374 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:52 Download gff for
BO06073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-PA | 515..1374 | 18..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:45 Download gff for
BO06073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RB | 674..1530 | 19..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:21 Download gff for
BO06073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RB | 674..1530 | 19..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:21 Download gff for
BO06073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4242144..4242457 | 19..332 | 100 | | Minus |
3L | 4241290..4241435 | 730..875 | 98 | -> | Minus |
3L | 4241494..4241703 | 520..729 | 100 | -> | Minus |
3L | 4241904..4242090 | 333..519 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:45 Download gff for
BO06073.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4241290..4241435 | 730..875 | 98 | -> | Minus |
arm_3L | 4241494..4241703 | 520..729 | 100 | -> | Minus |
arm_3L | 4241904..4242090 | 333..519 | 100 | -> | Minus |
arm_3L | 4242144..4242457 | 19..332 | 100 | | Minus |
BO06073.5prime Sequence
778 bp (749 high quality bases) assembled on 2005-12-02
> BO06073.5prime
GAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGT
GCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCC
ACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCA
AGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGT
TGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGAT
AAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAG
ATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCA
AATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTT
AGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCAC
CGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGG
AGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGAT
CATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCAC
GTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCT
ATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAAT
ATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGC
AGAGGCCCTGATGAAACTGATCAAGAGG
BO06073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-PB | 1374 | CG14997-RB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG14997-PA | 1374 | CG14997-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-RA | 1605 | CG14997-RA | 89..850 | 17..778 | 3810 | 100 | Plus |
CG14997-RB | 1676 | CG14997-RB | 160..921 | 17..778 | 3810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4240952..4241180 | 251..479 | 1130 | 99.6 | Plus |
3L | 28110227 | 3L | 4241233..4241435 | 474..676 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 4240396..4240523 | 17..144 | 640 | 100 | Plus |
3L | 28110227 | 3L | 4240786..4240891 | 145..250 | 530 | 100 | Plus |
3L | 28110227 | 3L | 4241492..4241595 | 675..778 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:04 has no hits.
BO06073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:14 Download gff for
BO06073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-PB | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:53 Download gff for
BO06073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:15 Download gff for
BO06073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RB | 158..921 | 13..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:16 Download gff for
BO06073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RB | 158..921 | 13..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:16 Download gff for
BO06073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4240394..4240523 | 13..144 | 98 | -> | Plus |
3L | 4240786..4240891 | 145..250 | 100 | -> | Plus |
3L | 4240952..4241176 | 251..475 | 100 | -> | Plus |
3L | 4241235..4241435 | 476..676 | 100 | -> | Plus |
3L | 4241494..4241595 | 677..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:15 Download gff for
BO06073.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4240394..4240523 | 13..144 | 98 | -> | Plus |
arm_3L | 4240786..4240891 | 145..250 | 100 | -> | Plus |
arm_3L | 4240952..4241176 | 251..475 | 100 | -> | Plus |
arm_3L | 4241235..4241435 | 476..676 | 100 | -> | Plus |
arm_3L | 4241494..4241595 | 677..778 | 100 | | Plus |
BO06073.complete Sequence
1405 bp (1405 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630272
> BO06073.complete
GAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGT
GCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCC
ACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCA
AGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGT
TGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGAT
AAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAG
ATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCA
AATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTT
AGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCAC
CGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGG
AGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGAT
CATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCAC
GTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCT
ATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAAT
ATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGC
AGAGGCCCTGATGAAACTGATCAAGAGGAGAAATATCACGCTTAATGTTC
AAAGAAATCTCGTTGAAGTGAGACATAAAGATAATATAGCCGTGTTCGAG
GATCTCGCCAAACCAGGAGTTCACTATGAGGAAACGTACTCCATGCTTCA
TGTGACTCCGCCGATGAGCACTCCGGATGTGGTGGCCAACTGCAAGAAAC
TGGTAACCCCCACTGGCTTTGTGGACGTCGACCAGTTGACGCTGCAGCAC
AACAAGTACAGCAACGTGTTCGCCATCGGCGATTCGGCGTCCAGTCCCAA
CTCGAAGACGGCCGCGGCGGCAGCCGCCCAATCACCGGTTGTGTTCAAAA
ACGTAATGGCGGCGATCGAGGGCAAAGCCCCAACGGATATCTACGATGGA
TACTCGTCCTGCCCCATCGTCACCGGCTACAGCTCCTGCATCCTGGCTGA
GTTTGATTACAACCTCACCCCCGTGGAGACCTTTCCATTGGACCAGTCCA
AGGAGAGGTACTCCATGTTCTTTATGAAGAAGGAGCTGATGCCGGTGCTC
TACTGGAAGCTGATGATGAACGGCTACTGGAACGGACCGGCACTAATGCG
GAAAATTTTCTCAGTGCTAAAGTTTAATAAAAAGCAAGCAAGCTTTCTAG
ACCAT
BO06073.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-RA | 1374 | CG14997-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
CG14997-RB | 1374 | CG14997-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-RA | 1605 | CG14997-RA | 89..1459 | 17..1387 | 6855 | 100 | Plus |
CG14997-RB | 1676 | CG14997-RB | 160..1530 | 17..1387 | 6855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4242141..4242457 | 1071..1387 | 1585 | 100 | Plus |
3L | 28110227 | 3L | 4240952..4241180 | 251..479 | 1130 | 99.6 | Plus |
3L | 28110227 | 3L | 4241492..4241703 | 675..886 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 4241233..4241435 | 474..676 | 1015 | 100 | Plus |
3L | 28110227 | 3L | 4241903..4242090 | 886..1073 | 940 | 100 | Plus |
3L | 28110227 | 3L | 4240396..4240523 | 17..144 | 640 | 100 | Plus |
3L | 28110227 | 3L | 4240786..4240891 | 145..250 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:05:05 has no hits.
BO06073.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:13 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RA | 1..1374 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:34 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RA | 86..1458 | 13..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:24 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RB | 160..1530 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:13 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RA | 86..1458 | 13..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:01 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14997-RB | 160..1530 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:01 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4240396..4240523 | 17..144 | 100 | -> | Plus |
3L | 4240786..4240891 | 145..250 | 100 | -> | Plus |
3L | 4240952..4241176 | 251..475 | 100 | -> | Plus |
3L | 4241235..4241435 | 476..676 | 100 | -> | Plus |
3L | 4241494..4241703 | 677..886 | 100 | -> | Plus |
3L | 4241904..4242090 | 887..1073 | 100 | -> | Plus |
3L | 4242144..4242457 | 1074..1389 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:24 Download gff for
BO06073.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4240786..4240891 | 145..250 | 100 | -> | Plus |
arm_3L | 4240396..4240523 | 17..144 | 100 | -> | Plus |
arm_3L | 4240952..4241176 | 251..475 | 100 | -> | Plus |
arm_3L | 4241235..4241435 | 476..676 | 100 | -> | Plus |
arm_3L | 4241494..4241703 | 677..886 | 100 | -> | Plus |
arm_3L | 4241904..4242090 | 887..1073 | 100 | -> | Plus |
arm_3L | 4242144..4242457 | 1074..1389 | 99 | | Plus |
BO06073.pep Sequence
Translation from 16 to 1405
> BO06073.pep
MNRRLPGTISQCQKLLLATHNHAPTAFSTRFLSTSRVNRERQECQVLVVG
GGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSH
RQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLN
YGKIPGLVEALETPDSNVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCP
IKCAGAPQKIAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMK
LIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHVTPPM
STPDVVANCKKLVTPTGFVDVDQLTLQHNKYSNVFAIGDSASSPNSKTAA
AAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNL
TPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIFSV
LKFNKKQASFLDH
BO06073.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14997-PA | 457 | CG14997-PA | 1..457 | 1..457 | 2403 | 100 | Plus |
CG14997-PB | 457 | CG14997-PB | 1..457 | 1..457 | 2403 | 100 | Plus |