Clone BO06073 Report

Search the DGRC for BO06073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG14997-RA
Protein status:BO06073.pep: validated full length
Sequenced Size:1405

Clone Sequence Records

BO06073.3prime Sequence

875 bp (795 high quality bases) assembled on 2005-12-02

> BO06073.3prime
ATGGTCTAGAAAGCTTGCTTGCTTTTTATTAAACTTTAGCACTGAGAAAA
TTTTCCGCATTAGTGCCGGTCCGTTCCAGTAGCCGTTCATCATCAGCTTC
CAGTAGAGCACCGGCATCAGCTCCTTCTTCATAAAGAACATGGAGTACCT
CTCCTTGGACTGGTCCAATGGAAAGGTCTCCACGGGGGTGAGGTTGTAAT
CAAACTCAGCCAGGATGCAGGAGCTGTAGCCGGTGACGATGGGGCAGGAC
GAGTATCCATCGTAGATATCCGTTGGGGCTTTGCCCTCGATCGCCGCCAT
TACGTTTTTGAACACAACCGGTGATTGGGCGGCTGCCGCCGCGGCCGTCT
TCGAGTTGGGACTGGACGCCGAATCGCCGATGGCGAACACGTTGCTGTAC
TTGTTGTGCTGCAGCGTCAACTGGTCGACGTCCACAAAGCCAGTGGGGGT
TACCAGTTTCTTGCAGTTGGCCACCACATCCGGAGTGCTCATCGGCGGAG
TCACATGAAGCATGGAGTACGTTTCCTCATAGTGAACTCCTGGTTTGGCG
AGATCCTCGAACACGGCTATATTATCTTTATGTCTCACTTCAACGAGATT
TCTTTGAACATTAAGCGTGATATTTCTCCTCTTGATCAGTTTCATCAGGG
CCTCTGCGTAATGCTTAACACCAAAAATCACGGGAAGCGATGTATTGTAG
ATGATATTGACGTTGTCGCGACGACCCATCTTCCTAAAGTAGTGCTCAGA
TATATAGGCGATTTTCTGCGGTGCACCTGCACACTTAATGGGACAATTGG
GAAACGTGAATATAGCATTTCCTTTTGTGGTCCTGCGCAGACATTCGTAC
ACATGATCCACGTACTTGGGCGAGT

BO06073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PB 1374 CG14997-RB 515..1371 875..19 4235 99.7 Minus
CG14997-PA 1374 CG14997-RA 515..1371 875..19 4235 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1605 CG14997-RA 603..1459 875..19 4255 99.8 Minus
CG14997-RB 1676 CG14997-RB 674..1530 875..19 4255 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4242141..4242457 335..19 1585 100 Minus
3L 28110227 3L 4241492..4241703 731..520 1060 100 Minus
3L 28110227 3L 4241903..4242090 520..333 940 100 Minus
3L 28110227 3L 4241290..4241435 875..730 700 98.6 Minus
Blast to na_te.dros performed on 2015-02-11 22:26:37 has no hits.

BO06073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:13 Download gff for BO06073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PB 515..1374 18..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:52 Download gff for BO06073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PA 515..1374 18..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:45 Download gff for BO06073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 674..1530 19..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:02:21 Download gff for BO06073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 674..1530 19..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:02:21 Download gff for BO06073.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4242144..4242457 19..332 100   Minus
3L 4241290..4241435 730..875 98 -> Minus
3L 4241494..4241703 520..729 100 -> Minus
3L 4241904..4242090 333..519 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:45 Download gff for BO06073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4241290..4241435 730..875 98 -> Minus
arm_3L 4241494..4241703 520..729 100 -> Minus
arm_3L 4241904..4242090 333..519 100 -> Minus
arm_3L 4242144..4242457 19..332 100   Minus

BO06073.5prime Sequence

778 bp (749 high quality bases) assembled on 2005-12-02

> BO06073.5prime
GAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGT
GCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCC
ACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCA
AGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGT
TGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGAT
AAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAG
ATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCA
AATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTT
AGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCAC
CGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGG
AGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGAT
CATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCAC
GTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCT
ATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAAT
ATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGC
AGAGGCCCTGATGAAACTGATCAAGAGG

BO06073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PB 1374 CG14997-RB 1..762 17..778 3810 100 Plus
CG14997-PA 1374 CG14997-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1605 CG14997-RA 89..850 17..778 3810 100 Plus
CG14997-RB 1676 CG14997-RB 160..921 17..778 3810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4240952..4241180 251..479 1130 99.6 Plus
3L 28110227 3L 4241233..4241435 474..676 1015 100 Plus
3L 28110227 3L 4240396..4240523 17..144 640 100 Plus
3L 28110227 3L 4240786..4240891 145..250 530 100 Plus
3L 28110227 3L 4241492..4241595 675..778 520 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:58:04 has no hits.

BO06073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:14 Download gff for BO06073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PB 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:53 Download gff for BO06073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:15 Download gff for BO06073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 158..921 13..778 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:16 Download gff for BO06073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 158..921 13..778 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:16 Download gff for BO06073.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4240394..4240523 13..144 98 -> Plus
3L 4240786..4240891 145..250 100 -> Plus
3L 4240952..4241176 251..475 100 -> Plus
3L 4241235..4241435 476..676 100 -> Plus
3L 4241494..4241595 677..778 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:15 Download gff for BO06073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4240394..4240523 13..144 98 -> Plus
arm_3L 4240786..4240891 145..250 100 -> Plus
arm_3L 4240952..4241176 251..475 100 -> Plus
arm_3L 4241235..4241435 476..676 100 -> Plus
arm_3L 4241494..4241595 677..778 100   Plus

BO06073.complete Sequence

1405 bp (1405 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630272

> BO06073.complete
GAAGTTATCAGTCGACATGAACCGTCGCCTTCCAGGAACCATCAGCCAGT
GCCAGAAGCTTCTCCTAGCCACCCACAACCATGCTCCAACGGCCTTCTCC
ACCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAATGCCA
AGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGCCAAGT
TGTCCTCACGTTTGGGCAGCGACAAGGTGGTCGTCCTGGAACCGGAAGAT
AAACATTACTACCAACCCATGTTCACCCTAATAGGAGGTGGTATGAAGAG
ATTGGATCAGAGCCACCGCCAAATGGCCGATGTGCTGCCCACAAAGGCCA
AATGGGTGAAGGAGAAGGCGCTGGAGTTCGATCCGGATAATAATACGGTT
AGCACTTCTGGTGGCAAGACCATCAAGTACGACTTCCTGATCATCGCCAC
CGGACTGCAGCTCAATTATGGAAAGATACCTGGCCTGGTGGAGGCCCTGG
AGACCCCCGACAGTAATGTTTGCTCCATCTACTCGCCCAAGTACGTGGAT
CATGTGTACGAATGTCTGCGCAGGACCAACAAAGGAAATGCTATATTCAC
GTTTCCCAATTGTCCCATTAAGTGTGCAGGTGCACCGCAGAAAATCGCCT
ATATATCTGAGCACTACTTTAGGAAGATGGGTCGTCGCGACAACGTCAAT
ATCATCTACAATACATCGCTTCCCGTGATTTTTGGTGTTAAGCATTACGC
AGAGGCCCTGATGAAACTGATCAAGAGGAGAAATATCACGCTTAATGTTC
AAAGAAATCTCGTTGAAGTGAGACATAAAGATAATATAGCCGTGTTCGAG
GATCTCGCCAAACCAGGAGTTCACTATGAGGAAACGTACTCCATGCTTCA
TGTGACTCCGCCGATGAGCACTCCGGATGTGGTGGCCAACTGCAAGAAAC
TGGTAACCCCCACTGGCTTTGTGGACGTCGACCAGTTGACGCTGCAGCAC
AACAAGTACAGCAACGTGTTCGCCATCGGCGATTCGGCGTCCAGTCCCAA
CTCGAAGACGGCCGCGGCGGCAGCCGCCCAATCACCGGTTGTGTTCAAAA
ACGTAATGGCGGCGATCGAGGGCAAAGCCCCAACGGATATCTACGATGGA
TACTCGTCCTGCCCCATCGTCACCGGCTACAGCTCCTGCATCCTGGCTGA
GTTTGATTACAACCTCACCCCCGTGGAGACCTTTCCATTGGACCAGTCCA
AGGAGAGGTACTCCATGTTCTTTATGAAGAAGGAGCTGATGCCGGTGCTC
TACTGGAAGCTGATGATGAACGGCTACTGGAACGGACCGGCACTAATGCG
GAAAATTTTCTCAGTGCTAAAGTTTAATAAAAAGCAAGCAAGCTTTCTAG
ACCAT

BO06073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1374 CG14997-PA 1..1371 17..1387 6855 100 Plus
CG14997-RB 1374 CG14997-PB 1..1371 17..1387 6855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-RA 1605 CG14997-RA 89..1459 17..1387 6855 100 Plus
CG14997-RB 1676 CG14997-RB 160..1530 17..1387 6855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4242141..4242457 1071..1387 1585 100 Plus
3L 28110227 3L 4240952..4241180 251..479 1130 99.6 Plus
3L 28110227 3L 4241492..4241703 675..886 1060 100 Plus
3L 28110227 3L 4241233..4241435 474..676 1015 100 Plus
3L 28110227 3L 4241903..4242090 886..1073 940 100 Plus
3L 28110227 3L 4240396..4240523 17..144 640 100 Plus
3L 28110227 3L 4240786..4240891 145..250 530 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:05:05 has no hits.

BO06073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:13 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 1..1374 17..1388 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:34 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 86..1458 13..1387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:24 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 160..1530 17..1389 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:13 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RA 86..1458 13..1387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:01 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
CG14997-RB 160..1530 17..1389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:01 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4240396..4240523 17..144 100 -> Plus
3L 4240786..4240891 145..250 100 -> Plus
3L 4240952..4241176 251..475 100 -> Plus
3L 4241235..4241435 476..676 100 -> Plus
3L 4241494..4241703 677..886 100 -> Plus
3L 4241904..4242090 887..1073 100 -> Plus
3L 4242144..4242457 1074..1389 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:24 Download gff for BO06073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4240786..4240891 145..250 100 -> Plus
arm_3L 4240396..4240523 17..144 100 -> Plus
arm_3L 4240952..4241176 251..475 100 -> Plus
arm_3L 4241235..4241435 476..676 100 -> Plus
arm_3L 4241494..4241703 677..886 100 -> Plus
arm_3L 4241904..4242090 887..1073 100 -> Plus
arm_3L 4242144..4242457 1074..1389 99   Plus

BO06073.pep Sequence

Translation from 16 to 1405

> BO06073.pep
MNRRLPGTISQCQKLLLATHNHAPTAFSTRFLSTSRVNRERQECQVLVVG
GGTGGCAMAAKLSSRLGSDKVVVLEPEDKHYYQPMFTLIGGGMKRLDQSH
RQMADVLPTKAKWVKEKALEFDPDNNTVSTSGGKTIKYDFLIIATGLQLN
YGKIPGLVEALETPDSNVCSIYSPKYVDHVYECLRRTNKGNAIFTFPNCP
IKCAGAPQKIAYISEHYFRKMGRRDNVNIIYNTSLPVIFGVKHYAEALMK
LIKRRNITLNVQRNLVEVRHKDNIAVFEDLAKPGVHYEETYSMLHVTPPM
STPDVVANCKKLVTPTGFVDVDQLTLQHNKYSNVFAIGDSASSPNSKTAA
AAAAQSPVVFKNVMAAIEGKAPTDIYDGYSSCPIVTGYSSCILAEFDYNL
TPVETFPLDQSKERYSMFFMKKELMPVLYWKLMMNGYWNGPALMRKIFSV
LKFNKKQASFLDH

BO06073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14997-PA 457 CG14997-PA 1..457 1..457 2403 100 Plus
CG14997-PB 457 CG14997-PB 1..457 1..457 2403 100 Plus