Clone Sequence Records
BO06074.5prime Sequence
626 bp (625 high quality bases) assembled on 2005-12-02
> BO06074.5prime
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACGCAAGCTTTCTAGACC
BO06074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10233-PA | 597 | CG10233-RA | 1..594 | 17..610 | 2970 | 100 | Plus |
CG10233-PB | 357 | CG10233-RB | 1..329 | 17..345 | 1645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:03:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 960 | CG10233-RA | 57..650 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5236873..5237173 | 345..45 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 5236402..5236666 | 610..346 | 1325 | 100 | Minus |
Blast to na_te.dros performed 2015-02-09 19:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 81..139 | 106 | 64.4 | Plus |
BO06074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:16 Download gff for
BO06074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:55 Download gff for
BO06074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:10 Download gff for
BO06074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..654 | 10..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:58 Download gff for
BO06074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..654 | 10..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:58 Download gff for
BO06074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5236398..5236666 | 346..614 | 99 | <- | Minus |
3R | 5236873..5237173 | 45..345 | 100 | <- | Minus |
3R | 5237232..5237263 | 10..44 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:10 Download gff for
BO06074.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1062120..1062388 | 346..614 | 99 | <- | Minus |
arm_3R | 1062595..1062895 | 45..345 | 100 | <- | Minus |
arm_3R | 1062954..1062985 | 10..44 | 91 | | Minus |
BO06074.3prime Sequence
626 bp (625 high quality bases) assembled on 2005-12-02
> BO06074.3prime
ATGGTCTAGAAAGCTTGCGTATGGGTGTTCGCACTGGGAACGGGCCATAA
GAGCGCACTTTTGTGCACGCTGCACCACCTCGGGACATCGACGTCGTCTC
ATAAAGCGGCAGTCTTGAAAGAATCCCTCGTTTCTGGGAAAGCCGTGCGT
GAAGTCCTGGAACGTCAGCAATCCCAGGCCCCAGATCTTGCCGCCTCGAA
ACTCGCCCTCGTACTTCATTCCATCGGCTCTCCAGAAGATCCCATTACCA
TGAAACCAGCCCTGATGAAACTCGCCTTCGTATTTTGCTCCATCCGCGAA
CCAGAGGCAGCCCACTCCTTGACTAAGACCCTCCTGGAACTGCCCATCGT
AGCGGGTGCCATCGGCGAACTGCAGATGCCCGATGCCGTGCTTTTGGCCA
CGCTGGTTCCACTCGCCGATGTAGCGACTGGCGTCCTCGTATCGCCATCC
GCCCACTTTGACCGCCCCTGCGCTGTACTGGCTTTGACCCTGGCCCTGTT
GGTGGTGTCCATGCTGACCCTGCTGGTGGGGGTGCTGTTGGTGCTGGTTC
TCGATTCGGGCCGTGGTCACGCCCACGCTGCTCATGTCATCATCGTAGTC
GTCCATGGCCATGTCGACTGATAACT
BO06074.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10233-PA | 597 | CG10233-RA | 1..594 | 612..19 | 2970 | 100 | Minus |
CG10233-PB | 357 | CG10233-RB | 1..329 | 612..284 | 1645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 960 | CG10233-RA | 57..650 | 612..19 | 2970 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5236873..5237173 | 284..584 | 1505 | 100 | Plus |
3R | 32079331 | 3R | 5236402..5236666 | 19..283 | 1325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 548..490 | 106 | 64.4 | Minus |
BO06074.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:15 Download gff for
BO06074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 16..612 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:55 Download gff for
BO06074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10233-PA | 1..597 | 16..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:41 Download gff for
BO06074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..654 | 15..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:41 Download gff for
BO06074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 53..654 | 15..619 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:41 Download gff for
BO06074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5236398..5236666 | 15..283 | 99 | <- | Plus |
3R | 5236873..5237173 | 284..584 | 100 | <- | Plus |
3R | 5237232..5237263 | 585..619 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:41 Download gff for
BO06074.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1062120..1062388 | 15..283 | 99 | <- | Plus |
arm_3R | 1062595..1062895 | 284..584 | 100 | <- | Plus |
arm_3R | 1062954..1062985 | 585..619 | 91 | | Plus |
BO06074.complete Sequence
628 bp (628 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630273
> BO06074.complete
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACGCAAGCTTTCTAGACCAT
BO06074.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 597 | CG10233-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-RA | 960 | CG10233-RA | 57..650 | 17..610 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5236873..5237173 | 345..45 | 1505 | 100 | Minus |
3R | 32079331 | 3R | 5236402..5236666 | 610..346 | 1325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2369 | 81..139 | 106 | 64.4 | Plus |
BO06074.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:04 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinophilin-RA | 1..597 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:23 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinophilin-RA | 54..655 | 10..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:18 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 57..650 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:04 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
retinophilin-RA | 54..655 | 10..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:15 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rtp-RA | 57..650 | 17..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:15 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5236399..5236666 | 346..612 | 99 | <- | Minus |
3R | 5236873..5237173 | 45..345 | 100 | <- | Minus |
3R | 5237232..5237259 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:18 Download gff for
BO06074.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1062121..1062388 | 346..612 | 99 | <- | Minus |
arm_3R | 1062595..1062895 | 45..345 | 100 | <- | Minus |
arm_3R | 1062954..1062981 | 17..44 | 100 | | Minus |
BO06074.pep Sequence
Translation from 16 to 628
> BO06074.pep
MAMDDYDDDMSSVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQYSAGA
VKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGLSQGV
GCLWFADGAKYEGEFHQGWFHGNGIFWRADGMKYEGEFRGGKIWGLGLLT
FQDFTHGFPRNEGFFQDCRFMRRRRCPEVVQRAQKCALMARSQCEHPYAS
FLDH
BO06074.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rtp-PA | 198 | CG10233-PA | 1..198 | 1..198 | 1127 | 100 | Plus |
CG14490-PA | 197 | CG14490-PA | 15..170 | 25..158 | 161 | 32.5 | Plus |
CG5458-PA | 344 | CG5458-PA | 33..143 | 47..157 | 159 | 33 | Plus |
CG5458-PA | 344 | CG5458-PA | 27..110 | 64..147 | 155 | 39.3 | Plus |
jp-PE | 1054 | CG4405-PE | 1..196 | 10..154 | 155 | 27.1 | Plus |
jp-PD | 1054 | CG4405-PD | 1..196 | 10..154 | 155 | 27.1 | Plus |