Clone BO06074 Report

Search the DGRC for BO06074

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptrtp-RA
Protein status:BO06074.pep: validated full length
Sequenced Size:628

Clone Sequence Records

BO06074.5prime Sequence

626 bp (625 high quality bases) assembled on 2005-12-02

> BO06074.5prime
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACGCAAGCTTTCTAGACC

BO06074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10233-PA 597 CG10233-RA 1..594 17..610 2970 100 Plus
CG10233-PB 357 CG10233-RB 1..329 17..345 1645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 960 CG10233-RA 57..650 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5236873..5237173 345..45 1505 100 Minus
3R 32079331 3R 5236402..5236666 610..346 1325 100 Minus
Blast to na_te.dros performed 2015-02-09 19:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2369 81..139 106 64.4 Plus

BO06074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:16 Download gff for BO06074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 17..613 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:55 Download gff for BO06074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:04:10 Download gff for BO06074.5prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..654 10..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:16:58 Download gff for BO06074.5prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..654 10..614 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:16:58 Download gff for BO06074.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5236398..5236666 346..614 99 <- Minus
3R 5236873..5237173 45..345 100 <- Minus
3R 5237232..5237263 10..44 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:04:10 Download gff for BO06074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1062120..1062388 346..614 99 <- Minus
arm_3R 1062595..1062895 45..345 100 <- Minus
arm_3R 1062954..1062985 10..44 91   Minus

BO06074.3prime Sequence

626 bp (625 high quality bases) assembled on 2005-12-02

> BO06074.3prime
ATGGTCTAGAAAGCTTGCGTATGGGTGTTCGCACTGGGAACGGGCCATAA
GAGCGCACTTTTGTGCACGCTGCACCACCTCGGGACATCGACGTCGTCTC
ATAAAGCGGCAGTCTTGAAAGAATCCCTCGTTTCTGGGAAAGCCGTGCGT
GAAGTCCTGGAACGTCAGCAATCCCAGGCCCCAGATCTTGCCGCCTCGAA
ACTCGCCCTCGTACTTCATTCCATCGGCTCTCCAGAAGATCCCATTACCA
TGAAACCAGCCCTGATGAAACTCGCCTTCGTATTTTGCTCCATCCGCGAA
CCAGAGGCAGCCCACTCCTTGACTAAGACCCTCCTGGAACTGCCCATCGT
AGCGGGTGCCATCGGCGAACTGCAGATGCCCGATGCCGTGCTTTTGGCCA
CGCTGGTTCCACTCGCCGATGTAGCGACTGGCGTCCTCGTATCGCCATCC
GCCCACTTTGACCGCCCCTGCGCTGTACTGGCTTTGACCCTGGCCCTGTT
GGTGGTGTCCATGCTGACCCTGCTGGTGGGGGTGCTGTTGGTGCTGGTTC
TCGATTCGGGCCGTGGTCACGCCCACGCTGCTCATGTCATCATCGTAGTC
GTCCATGGCCATGTCGACTGATAACT

BO06074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10233-PA 597 CG10233-RA 1..594 612..19 2970 100 Minus
CG10233-PB 357 CG10233-RB 1..329 612..284 1645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 960 CG10233-RA 57..650 612..19 2970 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5236873..5237173 284..584 1505 100 Plus
3R 32079331 3R 5236402..5236666 19..283 1325 100 Plus
Blast to na_te.dros performed 2015-02-13 06:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2369 548..490 106 64.4 Minus

BO06074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:15 Download gff for BO06074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 16..612 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:55 Download gff for BO06074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10233-PA 1..597 16..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:41 Download gff for BO06074.3prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..654 15..619 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:41 Download gff for BO06074.3prime
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 53..654 15..619 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:41 Download gff for BO06074.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5236398..5236666 15..283 99 <- Plus
3R 5236873..5237173 284..584 100 <- Plus
3R 5237232..5237263 585..619 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:41 Download gff for BO06074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1062120..1062388 15..283 99 <- Plus
arm_3R 1062595..1062895 284..584 100 <- Plus
arm_3R 1062954..1062985 585..619 91   Plus

BO06074.complete Sequence

628 bp (628 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630273

> BO06074.complete
GAAGTTATCAGTCGACATGGCCATGGACGACTACGATGATGACATGAGCA
GCGTGGGCGTGACCACGGCCCGAATCGAGAACCAGCACCAACAGCACCCC
CACCAGCAGGGTCAGCATGGACACCACCAACAGGGCCAGGGTCAAAGCCA
GTACAGCGCAGGGGCGGTCAAAGTGGGCGGATGGCGATACGAGGACGCCA
GTCGCTACATCGGCGAGTGGAACCAGCGTGGCCAAAAGCACGGCATCGGG
CATCTGCAGTTCGCCGATGGCACCCGCTACGATGGGCAGTTCCAGGAGGG
TCTTAGTCAAGGAGTGGGCTGCCTCTGGTTCGCGGATGGAGCAAAATACG
AAGGCGAGTTTCATCAGGGCTGGTTTCATGGTAATGGGATCTTCTGGAGA
GCCGATGGAATGAAGTACGAGGGCGAGTTTCGAGGCGGCAAGATCTGGGG
CCTGGGATTGCTGACGTTCCAGGACTTCACGCACGGCTTTCCCAGAAACG
AGGGATTCTTTCAAGACTGCCGCTTTATGAGACGACGTCGATGTCCCGAG
GTGGTGCAGCGTGCACAAAAGTGCGCTCTTATGGCCCGTTCCCAGTGCGA
ACACCCATACGCAAGCTTTCTAGACCAT

BO06074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 597 CG10233-PA 1..594 17..610 2970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-RA 960 CG10233-RA 57..650 17..610 2970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5236873..5237173 345..45 1505 100 Minus
3R 32079331 3R 5236402..5236666 610..346 1325 100 Minus
Blast to na_te.dros performed 2014-11-28 00:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2369 81..139 106 64.4 Plus

BO06074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:04 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
retinophilin-RA 1..597 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:23 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
retinophilin-RA 54..655 10..614 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:18 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 57..650 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:04 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
retinophilin-RA 54..655 10..614 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:15 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
rtp-RA 57..650 17..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:15 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5236399..5236666 346..612 99 <- Minus
3R 5236873..5237173 45..345 100 <- Minus
3R 5237232..5237259 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:18 Download gff for BO06074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1062121..1062388 346..612 99 <- Minus
arm_3R 1062595..1062895 45..345 100 <- Minus
arm_3R 1062954..1062981 17..44 100   Minus

BO06074.pep Sequence

Translation from 16 to 628

> BO06074.pep
MAMDDYDDDMSSVGVTTARIENQHQQHPHQQGQHGHHQQGQGQSQYSAGA
VKVGGWRYEDASRYIGEWNQRGQKHGIGHLQFADGTRYDGQFQEGLSQGV
GCLWFADGAKYEGEFHQGWFHGNGIFWRADGMKYEGEFRGGKIWGLGLLT
FQDFTHGFPRNEGFFQDCRFMRRRRCPEVVQRAQKCALMARSQCEHPYAS
FLDH

BO06074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
rtp-PA 198 CG10233-PA 1..198 1..198 1127 100 Plus
CG14490-PA 197 CG14490-PA 15..170 25..158 161 32.5 Plus
CG5458-PA 344 CG5458-PA 33..143 47..157 159 33 Plus
CG5458-PA 344 CG5458-PA 27..110 64..147 155 39.3 Plus
jp-PE 1054 CG4405-PE 1..196 10..154 155 27.1 Plus
jp-PD 1054 CG4405-PD 1..196 10..154 155 27.1 Plus