Clone Sequence Records
BO06075.3prime Sequence
920 bp (761 high quality bases) assembled on 2005-12-02
> BO06075.3prime
ATGGTCTAGAAAGCTTGCGGCACACGCCTGAACAGCGGACTCGGCCTCCT
TGGGCTCCGGCGAGCCCAACTTTATGCGCTTGCACTGCCTCTCCTCCGGC
TCCTCATCGCTAAAGCCTTCCGGTGGAGCGACGTTCAAAGAGTCTGAGTC
AGGGAGCTCCTTATCGTCGCTCGATACTGTCAGCGCTCTAATGGGTAGCT
CCTGCTCATAGAGATCCAACAGCTTATTGCCTTCGTACAGGACAAACGGC
AAGGTGGCTCGCTGATAGTAGTCCGGCATCAGCTCCAAGTTGTTGATCAC
CGTGTCCAGCATGTGGGACTTCTCGCACCATATGCCCGGTGCATCGTTCC
GTACTGGATTGATGTGCACGTGGAGGTGATAGAAGGACGGCTGGTAATGA
AAGTACATGCGCAGCTGATTGGGATTAATGCCGTATAGCTTGGCAATTGC
GTCCTTCGACGCTTGGCGCACGTTGCGCAAAAGATCGAGATGACTTTCAT
TCAAGTCGCGCAGAGACTTGATGTCGCGCTTGTGGACAATTCCCAGCAGA
TAGAGGGTTTCCACATTGCGTCCGTCCCATTTGAGATCGGGCAGAAGGAT
AAAGCCAGTCTTTGGATCCCTGTCCTCGTACACGATACGTTCCGTCTCCT
GCTTATGCTCGAGTATGTTGTAGACCCACTCGAGGGAGAATTGACTTGAG
GTGAGATATGGAAGAGTTATTCTTTGGTAGAGATCAGGAGTCTCCCGGAT
GAGATACTTTTGAGATACTGAGTATTTCTCGATGTGCTTCTCGGTGGCGG
GATAAATGACTGTGCTTTTCACACTGCACAAATCCTGGGTCGGCACAACC
TGAAAACTGCCGTAGATATTGTTGATAAACTCAGTGTCAACTTTCAGGTC
CGCGGTAAATAGCTAGGCTT
BO06075.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-PA | 1125 | CG2091-RA | 232..1122 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-RA | 1335 | CG2091-RA | 317..1219 | 920..19 | 4490 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5753434..5754239 | 19..824 | 4030 | 100 | Plus |
| 3R | 32079331 | 3R | 5754299..5754397 | 823..920 | 445 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:54:19 has no hits.
BO06075.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:17 Download gff for
BO06075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-PA | 220..1125 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:57 Download gff for
BO06075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-PA | 220..1125 | 15..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:27:59 Download gff for
BO06075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 317..1225 | 12..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:13 Download gff for
BO06075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 317..1225 | 12..920 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:13 Download gff for
BO06075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5753428..5754239 | 12..824 | 99 | <- | Plus |
| 3R | 5754301..5754397 | 825..920 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:27:59 Download gff for
BO06075.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1579150..1579961 | 12..824 | 99 | <- | Plus |
| arm_3R | 1580023..1580119 | 825..920 | 98 | | Plus |
BO06075.5prime Sequence
898 bp (833 high quality bases) assembled on 2005-12-02
> BO06075.5prime
GAAGTTATCAGTCGACATGTCGGAAACAGTTGATAGCACAGAGGTAAAGT
CGCCGTCGTACGACTTATCCAAGTTCCAACTGAAGCGAATCCTAACCAAC
AACAGCGTTAGGAAAAGTATATCCCTGCTTGGCACTTTTCCGGATTTAGG
AACCGATGATGCCATTGTTGTTTTCGAGAAAAATGCGTACCGGGAAAGCG
ATGTGGCCACGGCGTCATCAGAAGAGTCTCCCAAGAAGCCTAGCTATTTT
ACCGCGGACCTGAAAGTTGACACTGAGTTTATCAACAATATCTACGGCAG
TTTTCAGGTTGTGCCGACCCAGGATTTGTGCAGTGTGAAAAGCACAGTCA
TTTATCCCGCCACCGAGAAGCACATCGAGAAATACTCAGTATCTCAAAAG
TATCTCATCCGGGAGACTCCTGATCTCTACCAAAGAATAACTCTTCCATA
TCTCACCTCAAGTCAATTCTCCCTCGAGTGGGTCTACAACATACTCGAGC
ATAAGCAGGAGACGGAACGTATCGTGTACGAGGACAGGGATCCAAAGACT
GGCTTTATCCTTCTGCCCGATCTCAAATGGGACGGACGCAATGTGGAAAC
CCTCTATCTGCTGGGAATTGTCCACAAGCGCGACATCAAGTCTCTGCGCG
ACTTGAATGAAAGTCATCTCGATCTTTTGCGCAACGTGCGCCAAGCGTCG
AAGGACGCAATTGCCAAGCTATACGGCATTAATCCCAATCAGCTGCGCAT
GTACTTTCATTACCAGCCGTCCTTCTATCACCTCCACGTGCACATCAATC
CAGTACGGAACGATGCACCGGGCATATGGTGCGAGAAGTCCACATGCTGG
ACACGGTGATCAACAACTTGGAGCTGATGCCGGACTACTATCAGCGAG
BO06075.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-PA | 1125 | CG2091-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG2091-PA | 1125 | CG2091-RA | 825..883 | 840..898 | 295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-RA | 1335 | CG2091-RA | 98..980 | 17..898 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5753673..5754239 | 898..333 | 2785 | 99.8 | Minus |
| 3R | 32079331 | 3R | 5754509..5754677 | 185..17 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5754299..5754448 | 334..185 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:51:11 has no hits.
BO06075.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:18 Download gff for
BO06075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:07:59 Download gff for
BO06075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:23 Download gff for
BO06075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..980 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:21:47 Download gff for
BO06075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..980 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:21:47 Download gff for
BO06075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5754301..5754447 | 186..332 | 100 | <- | Minus |
| 3R | 5754509..5754677 | 17..185 | 100 | | Minus |
| 3R | 5753673..5754239 | 333..898 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:23 Download gff for
BO06075.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1579395..1579961 | 333..898 | 99 | <- | Minus |
| arm_3R | 1580023..1580169 | 186..332 | 100 | <- | Minus |
| arm_3R | 1580231..1580399 | 17..185 | 100 | | Minus |
BO06075.complete Sequence
1156 bp (1156 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630274
> BO06075.complete
GAAGTTATCAGTCGACATGTCGGAAACAGTTGATAGCACAGAGGTAAAGT
CGCCGTCGTACGACTTATCCAAGTTCCAACTGAAGCGAATCCTAACCAAC
AACAGCGTTAGGAAAAGTATATCCCTGCTTGGCACTTTTCCGGATTTAGG
AACCGATGATGCCATTGTTGTTTTCGAGAAAAATGCGTACCGGGAAAGCG
ATGTGGCCACGGCGTCATCAGAAGAGTCTCCCAAGAAGCCTAGCTATTTT
ACCGCGGACCTGAAAGTTGACACTGAGTTTATCAACAATATCTACGGCAG
TTTTCAGGTTGTGCCGACCCAGGATTTGTGCAGTGTGAAAAGCACAGTCA
TTTATCCCGCCACCGAGAAGCACATCGAGAAATACTCAGTATCTCAAAAG
TATCTCATCCGGGAGACTCCTGATCTCTACCAAAGAATAACTCTTCCATA
TCTCACCTCAAGTCAATTCTCCCTCGAGTGGGTCTACAACATACTCGAGC
ATAAGCAGGAGACGGAACGTATCGTGTACGAGGACAGGGATCCAAAGACT
GGCTTTATCCTTCTGCCCGATCTCAAATGGGACGGACGCAATGTGGAAAC
CCTCTATCTGCTGGGAATTGTCCACAAGCGCGACATCAAGTCTCTGCGCG
ACTTGAATGAAAGTCATCTCGATCTTTTGCGCAACGTGCGCCAAGCGTCG
AAGGACGCAATTGCCAAGCTATACGGCATTAATCCCAATCAGCTGCGCAT
GTACTTTCATTACCAGCCGTCCTTCTATCACCTCCACGTGCACATCAATC
CAGTACGGAACGATGCACCGGGCATATGGTGCGAGAAGTCCCACATGCTG
GACACGGTGATCAACAACTTGGAGCTGATGCCGGACTACTATCAGCGAGC
CACCTTGCCGTTTGTCCTGTACGAAGGCAATAAGCTGTTGGATCTCTATG
AGCAGGAGCTACCCATTAGAGCGCTGACAGTATCGAGCGACGATAAGGAG
CTCCCTGACTCAGACTCTTTGAACGTCGCTCCACCGGAAGGCTTTAGCGA
TGAGGAGCCGGAGGAGAGGCAGTGCAAGCGCATAAAGTTGGGCTCGCCGG
AGCCCAAGGAGGCCGAGTCCGCTGTTCAGGCGTGTGCCGCAAGCTTTCTA
GACCAT
BO06075.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-RA | 1125 | CG2091-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-RA | 1335 | CG2091-RA | 98..1219 | 17..1138 | 5610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5753434..5754239 | 1138..333 | 4030 | 100 | Minus |
| 3R | 32079331 | 3R | 5754509..5754677 | 185..17 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5754299..5754448 | 334..185 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:21:01 has no hits.
BO06075.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:56 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 1..1125 | 17..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:12 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 97..1224 | 17..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:09:46 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..1219 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:56 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 97..1224 | 17..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:32 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2091-RA | 98..1219 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:32 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5753432..5754239 | 333..1140 | 99 | <- | Minus |
| 3R | 5754301..5754447 | 186..332 | 100 | <- | Minus |
| 3R | 5754509..5754677 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:09:46 Download gff for
BO06075.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1579154..1579961 | 333..1140 | 99 | <- | Minus |
| arm_3R | 1580023..1580169 | 186..332 | 100 | <- | Minus |
| arm_3R | 1580231..1580399 | 17..185 | 100 | | Minus |
BO06075.pep Sequence
Translation from 16 to 1156
> BO06075.pep
MSETVDSTEVKSPSYDLSKFQLKRILTNNSVRKSISLLGTFPDLGTDDAI
VVFEKNAYRESDVATASSEESPKKPSYFTADLKVDTEFINNIYGSFQVVP
TQDLCSVKSTVIYPATEKHIEKYSVSQKYLIRETPDLYQRITLPYLTSSQ
FSLEWVYNILEHKQETERIVYEDRDPKTGFILLPDLKWDGRNVETLYLLG
IVHKRDIKSLRDLNESHLDLLRNVRQASKDAIAKLYGINPNQLRMYFHYQ
PSFYHLHVHINPVRNDAPGIWCEKSHMLDTVINNLELMPDYYQRATLPFV
LYEGNKLLDLYEQELPIRALTVSSDDKELPDSDSLNVAPPEGFSDEEPEE
RQCKRIKLGSPEPKEAESAVQACAASFLDH
BO06075.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2091-PA | 374 | CG2091-PA | 1..374 | 1..374 | 1948 | 100 | Plus |
