Clone Sequence Records
BO06076.3prime Sequence
833 bp (784 high quality bases) assembled on 2005-12-02
> BO06076.3prime
ATGGTCTAGAAAGCTTGCTAATTTTGTTGGATCCAATGGATGAACCTGAC
CATCATCCCGCTCAAACTTAATTATCAGCTGCGACTGATGCTGGTTCCAG
TGCTCCGATCGATGTAATTTAGCATTCGTCTTCGAACGGAATTCCTCGAC
TGACAAATCGATCTCAATTTTTTCGTTACTTGCATCCGGATCGGCGGGGT
AAGCATCATCTCCTGGCAAGAGATGCACTAATCCATTTGTACACTTGTGC
ACTACAGGATGAATCAGCTGAATGCCTTTGACCTCACGCTCTGCTGCAAA
CTGACGCAGGTTATCTAAAGAGGAGAAGTTTAGGCAGCGCGAAAGTTCAT
AGAATTGTGGAGGCGGCAGCCAGAGTTCTTTTCTTAGGCTCGCTTGAAGG
TAGTCCAATGGGGAACGCCACGCAGAATCCTTGACCTCATTAGGTTCGAT
GTGAACCCTGGGTTCCTGTTCCAGGGCAGTCATAAAGAAGGCCGTCTCGA
AGCGCTTCTTAAACGTGGACGGCGTGCGCCAGACAGACCACTCGTGAAGT
GACCAGACATCTGGAAGCACATCCAGCTGCTTGCAGAGCTCCAGGAACTG
GCTGGCATTGTTGTGGACGATGTGCTGCCAGTGGGCGCGGTCAAACTGGT
CATAGAACGCTCCATAATCGCTAGTGGAGGTCAATGATTTGCTGTCCCTG
CACAGCAGGATACCCAACTCCTCGAAGGTTTCTCGTATGGCAGTCAGCCG
CAGAGCTAGGGATGGATCCAGCGATTTCTTATCTGCCTTGGTGTGGAAAA
TATCCGGACGTGGACCCTTCACGTGGCCCACGT
BO06076.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-PA | 1056 | CG10194-RA | 239..1053 | 833..19 | 4075 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1215 | CG10194-RA | 272..1086 | 833..19 | 4075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:51:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19488811..19489213 | 19..421 | 2015 | 100 | Plus |
2L | 23513712 | 2L | 19489300..19489642 | 421..763 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 19489705..19489774 | 764..833 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:51:55 has no hits.
BO06076.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:19 Download gff for
BO06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 239..1056 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:00 Download gff for
BO06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 239..1056 | 18..833 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:02 Download gff for
BO06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 272..1086 | 19..833 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:35 Download gff for
BO06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 272..1086 | 19..833 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:35 Download gff for
BO06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19488811..19489212 | 19..420 | 100 | <- | Plus |
2L | 19489300..19489642 | 421..763 | 100 | <- | Plus |
2L | 19489705..19489774 | 764..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:02 Download gff for
BO06076.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19488811..19489212 | 19..420 | 100 | <- | Plus |
arm_2L | 19489300..19489642 | 421..763 | 100 | <- | Plus |
arm_2L | 19489705..19489774 | 764..833 | 100 | | Plus |
BO06076.5prime Sequence
871 bp (794 high quality bases) assembled on 2005-12-02
> BO06076.5prime
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTG
BO06076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-PA | 1056 | CG10194-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1215 | CG10194-RA | 34..888 | 17..871 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19489300..19489642 | 667..325 | 1715 | 100 | Minus |
2L | 23513712 | 2L | 19489705..19489919 | 324..110 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 19489009..19489213 | 871..667 | 1025 | 100 | Minus |
2L | 23513712 | 2L | 19489978..19490071 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:48:18 has no hits.
BO06076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:20 Download gff for
BO06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:02 Download gff for
BO06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:34 Download gff for
BO06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..888 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:11 Download gff for
BO06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..888 | 17..871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:11 Download gff for
BO06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19489009..19489212 | 668..871 | 100 | <- | Minus |
2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
2L | 19489979..19490071 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:34 Download gff for
BO06076.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19489009..19489212 | 668..871 | 100 | <- | Minus |
arm_2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
arm_2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
arm_2L | 19489979..19490071 | 17..109 | 100 | | Minus |
BO06076.complete Sequence
1087 bp (1087 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630275
> BO06076.complete
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCC
GGATGCAAGTAACGAAAAAATTGAGATCGATTTGTCAGTCGAGGAATTCC
GTTCGAAGACGAATGCTAAATTACATCGATCGGAGCACTGGAACCAGCAT
CAGTCGCAGCTGATAATTAAGTTTGAGCGGGATGATGGTCAGGTTCATCC
ATTGGATCCAACAAAATTAGCAAGCTTTCTAGACCAT
BO06076.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1056 | CG10194-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-RA | 1215 | CG10194-RA | 34..1086 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19488811..19489213 | 1069..667 | 2015 | 100 | Minus |
2L | 23513712 | 2L | 19489300..19489642 | 667..325 | 1715 | 100 | Minus |
2L | 23513712 | 2L | 19489705..19489919 | 324..110 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 19489978..19490071 | 110..17 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:04:38 has no hits.
BO06076.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:57 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 1..1056 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:14 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 13..1065 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:50 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..1086 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:57 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 13..1065 | 17..1069 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:59 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10194-RA | 34..1086 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:59 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19488809..19489212 | 668..1071 | 99 | <- | Minus |
2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
2L | 19489979..19490071 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:50 Download gff for
BO06076.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19488809..19489212 | 668..1071 | 99 | <- | Minus |
arm_2L | 19489300..19489642 | 325..667 | 100 | <- | Minus |
arm_2L | 19489705..19489919 | 110..324 | 100 | <- | Minus |
arm_2L | 19489979..19490071 | 17..109 | 100 | | Minus |
BO06076.pep Sequence
Translation from 16 to 1087
> BO06076.pep
MSRLLPKIRSSSSLILLAKNQVEKSTSCDYNALLLTRTQKSTFMPESSVF
PGGVCDASDSSPAWLEHFQRNEFSAAKLRNVGHVKGPRPDIFHTKADKKS
LDPSLALRLTAIRETFEELGILLCRDSKSLTSTSDYGAFYDQFDRAHWQH
IVHNNASQFLELCKQLDVLPDVWSLHEWSVWRTPSTFKKRFETAFFMTAL
EQEPRVHIEPNEVKDSAWRSPLDYLQASLRKELWLPPPQFYELSRCLNFS
SLDNLRQFAAEREVKGIQLIHPVVHKCTNGLVHLLPGDDAYPADPDASNE
KIEIDLSVEEFRSKTNAKLHRSEHWNQHQSQLIIKFERDDGQVHPLDPTK
LASFLDH
BO06076.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10194-PA | 351 | CG10194-PA | 1..351 | 1..351 | 1861 | 100 | Plus |
CG18094-PB | 360 | CG18094-PB | 9..351 | 9..348 | 537 | 34.9 | Plus |
CG18094-PA | 360 | CG18094-PA | 9..351 | 9..348 | 537 | 34.9 | Plus |
CG10195-PB | 361 | CG10195-PB | 9..328 | 7..321 | 535 | 36.3 | Plus |
CG10195-PC | 361 | CG10195-PC | 9..328 | 7..321 | 535 | 36.3 | Plus |