Clone BO06076 Report

Search the DGRC for BO06076

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG10194-RA
Protein status:BO06076.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO06076.3prime Sequence

833 bp (784 high quality bases) assembled on 2005-12-02

> BO06076.3prime
ATGGTCTAGAAAGCTTGCTAATTTTGTTGGATCCAATGGATGAACCTGAC
CATCATCCCGCTCAAACTTAATTATCAGCTGCGACTGATGCTGGTTCCAG
TGCTCCGATCGATGTAATTTAGCATTCGTCTTCGAACGGAATTCCTCGAC
TGACAAATCGATCTCAATTTTTTCGTTACTTGCATCCGGATCGGCGGGGT
AAGCATCATCTCCTGGCAAGAGATGCACTAATCCATTTGTACACTTGTGC
ACTACAGGATGAATCAGCTGAATGCCTTTGACCTCACGCTCTGCTGCAAA
CTGACGCAGGTTATCTAAAGAGGAGAAGTTTAGGCAGCGCGAAAGTTCAT
AGAATTGTGGAGGCGGCAGCCAGAGTTCTTTTCTTAGGCTCGCTTGAAGG
TAGTCCAATGGGGAACGCCACGCAGAATCCTTGACCTCATTAGGTTCGAT
GTGAACCCTGGGTTCCTGTTCCAGGGCAGTCATAAAGAAGGCCGTCTCGA
AGCGCTTCTTAAACGTGGACGGCGTGCGCCAGACAGACCACTCGTGAAGT
GACCAGACATCTGGAAGCACATCCAGCTGCTTGCAGAGCTCCAGGAACTG
GCTGGCATTGTTGTGGACGATGTGCTGCCAGTGGGCGCGGTCAAACTGGT
CATAGAACGCTCCATAATCGCTAGTGGAGGTCAATGATTTGCTGTCCCTG
CACAGCAGGATACCCAACTCCTCGAAGGTTTCTCGTATGGCAGTCAGCCG
CAGAGCTAGGGATGGATCCAGCGATTTCTTATCTGCCTTGGTGTGGAAAA
TATCCGGACGTGGACCCTTCACGTGGCCCACGT

BO06076.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 1056 CG10194-RA 239..1053 833..19 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1215 CG10194-RA 272..1086 833..19 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19488811..19489213 19..421 2015 100 Plus
2L 23513712 2L 19489300..19489642 421..763 1715 100 Plus
2L 23513712 2L 19489705..19489774 764..833 350 100 Plus
Blast to na_te.dros performed on 2015-02-04 19:51:55 has no hits.

BO06076.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:19 Download gff for BO06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 239..1056 18..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:00 Download gff for BO06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 239..1056 18..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:02 Download gff for BO06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 272..1086 19..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:35 Download gff for BO06076.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 272..1086 19..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:35 Download gff for BO06076.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19488811..19489212 19..420 100 <- Plus
2L 19489300..19489642 421..763 100 <- Plus
2L 19489705..19489774 764..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:02 Download gff for BO06076.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19488811..19489212 19..420 100 <- Plus
arm_2L 19489300..19489642 421..763 100 <- Plus
arm_2L 19489705..19489774 764..833 100   Plus

BO06076.5prime Sequence

871 bp (794 high quality bases) assembled on 2005-12-02

> BO06076.5prime
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTG

BO06076.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 1056 CG10194-RA 1..855 17..871 4275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1215 CG10194-RA 34..888 17..871 4275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19489300..19489642 667..325 1715 100 Minus
2L 23513712 2L 19489705..19489919 324..110 1075 100 Minus
2L 23513712 2L 19489009..19489213 871..667 1025 100 Minus
2L 23513712 2L 19489978..19490071 110..17 470 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:48:18 has no hits.

BO06076.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:20 Download gff for BO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:02 Download gff for BO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:34 Download gff for BO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..888 17..871 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:11 Download gff for BO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..888 17..871 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:11 Download gff for BO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19489009..19489212 668..871 100 <- Minus
2L 19489300..19489642 325..667 100 <- Minus
2L 19489705..19489919 110..324 100 <- Minus
2L 19489979..19490071 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:34 Download gff for BO06076.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19489009..19489212 668..871 100 <- Minus
arm_2L 19489300..19489642 325..667 100 <- Minus
arm_2L 19489705..19489919 110..324 100 <- Minus
arm_2L 19489979..19490071 17..109 100   Minus

BO06076.complete Sequence

1087 bp (1087 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630275

> BO06076.complete
GAAGTTATCAGTCGACATGTCGAGGCTTTTGCCCAAAATTCGCTCCTCCT
CAAGTTTAATCCTTCTGGCTAAGAACCAAGTTGAAAAGTCCACGTCGTGT
GATTACAATGCCCTCCTCCTTACACGCACGCAGAAGTCCACTTTCATGCC
GGAGTCATCCGTGTTTCCTGGCGGAGTTTGCGATGCCTCGGACAGTTCGC
CTGCCTGGTTGGAACACTTTCAGAGAAACGAGTTCAGTGCCGCTAAGCTG
CGGAACGTGGGCCACGTGAAGGGTCCACGTCCGGATATTTTCCACACCAA
GGCAGATAAGAAATCGCTGGATCCATCCCTAGCTCTGCGGCTGACTGCCA
TACGAGAAACCTTCGAGGAGTTGGGTATCCTGCTGTGCAGGGACAGCAAA
TCATTGACCTCCACTAGCGATTATGGAGCGTTCTATGACCAGTTTGACCG
CGCCCACTGGCAGCACATCGTCCACAACAATGCCAGCCAGTTCCTGGAGC
TCTGCAAGCAGCTGGATGTGCTTCCAGATGTCTGGTCACTTCACGAGTGG
TCTGTCTGGCGCACGCCGTCCACGTTTAAGAAGCGCTTCGAGACGGCCTT
CTTTATGACTGCCCTGGAACAGGAACCCAGGGTTCACATCGAACCTAATG
AGGTCAAGGATTCTGCGTGGCGTTCCCCATTGGACTACCTTCAAGCGAGC
CTAAGAAAAGAACTCTGGCTGCCGCCTCCACAATTCTATGAACTTTCGCG
CTGCCTAAACTTCTCCTCTTTAGATAACCTGCGTCAGTTTGCAGCAGAGC
GTGAGGTCAAAGGCATTCAGCTGATTCATCCTGTAGTGCACAAGTGTACA
AATGGATTAGTGCATCTCTTGCCAGGAGATGATGCTTACCCCGCCGATCC
GGATGCAAGTAACGAAAAAATTGAGATCGATTTGTCAGTCGAGGAATTCC
GTTCGAAGACGAATGCTAAATTACATCGATCGGAGCACTGGAACCAGCAT
CAGTCGCAGCTGATAATTAAGTTTGAGCGGGATGATGGTCAGGTTCATCC
ATTGGATCCAACAAAATTAGCAAGCTTTCTAGACCAT

BO06076.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1056 CG10194-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-RA 1215 CG10194-RA 34..1086 17..1069 5265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19488811..19489213 1069..667 2015 100 Minus
2L 23513712 2L 19489300..19489642 667..325 1715 100 Minus
2L 23513712 2L 19489705..19489919 324..110 1075 100 Minus
2L 23513712 2L 19489978..19490071 110..17 470 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:04:38 has no hits.

BO06076.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:57 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 1..1056 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:14 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 13..1065 17..1069 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:50 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..1086 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:57 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 13..1065 17..1069 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:59 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
CG10194-RA 34..1086 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:59 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19488809..19489212 668..1071 99 <- Minus
2L 19489300..19489642 325..667 100 <- Minus
2L 19489705..19489919 110..324 100 <- Minus
2L 19489979..19490071 17..109 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:50 Download gff for BO06076.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19488809..19489212 668..1071 99 <- Minus
arm_2L 19489300..19489642 325..667 100 <- Minus
arm_2L 19489705..19489919 110..324 100 <- Minus
arm_2L 19489979..19490071 17..109 100   Minus

BO06076.pep Sequence

Translation from 16 to 1087

> BO06076.pep
MSRLLPKIRSSSSLILLAKNQVEKSTSCDYNALLLTRTQKSTFMPESSVF
PGGVCDASDSSPAWLEHFQRNEFSAAKLRNVGHVKGPRPDIFHTKADKKS
LDPSLALRLTAIRETFEELGILLCRDSKSLTSTSDYGAFYDQFDRAHWQH
IVHNNASQFLELCKQLDVLPDVWSLHEWSVWRTPSTFKKRFETAFFMTAL
EQEPRVHIEPNEVKDSAWRSPLDYLQASLRKELWLPPPQFYELSRCLNFS
SLDNLRQFAAEREVKGIQLIHPVVHKCTNGLVHLLPGDDAYPADPDASNE
KIEIDLSVEEFRSKTNAKLHRSEHWNQHQSQLIIKFERDDGQVHPLDPTK
LASFLDH

BO06076.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10194-PA 351 CG10194-PA 1..351 1..351 1861 100 Plus
CG18094-PB 360 CG18094-PB 9..351 9..348 537 34.9 Plus
CG18094-PA 360 CG18094-PA 9..351 9..348 537 34.9 Plus
CG10195-PB 361 CG10195-PB 9..328 7..321 535 36.3 Plus
CG10195-PC 361 CG10195-PC 9..328 7..321 535 36.3 Plus