Clone Sequence Records
BO06077.3prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-02
> BO06077.3prime
ATGGTCTAGAAAGCTTGCCACGACGCGCTTGACCTCGAAGAAGCGTTTCA
GGTAGTACACCTGGCCCACTGTCATCAGGACCAGGACGAGGGCTTCGAAG
GTGGACCACAGCACCACTCGCGAGTTGGTGTTCTCGTTCACCGAACGATG
GATCTTGTCGCGCACATGCATGTACTCCTGTTCGTGCTTGACACTGGTCA
GCGTGCCGGAGAGCTCCCGAATCATGTCCTCCAGCTTGGTGTGGCCCACC
TCCTCCTCGCCGGGTGCTCCGGGCGCACGTTGCGGTGCGTCACCCACGTC
GATGGAGAACATGACCAGCTTGGGGGTCATGCTGCTGCGTTCGTTGTTGA
AGCACACGGTGTAGGTTCCCTTGGCGGGGGCCACAAAGGTGTACTTGCCG
GACGACTCCTTTTCGCTCTCGTGCATCACATGGTTATCCGGGCCGCTGAT
CTTGATGTCCACGTCTAGGAAGCCACCGTCGATCACCTCGAAGGTGACGC
CAAACTTGGTGCCGCCTTCGACGTTCTCGAAGAAGCACTCCTCATTGTGG
GCGTCCACGCTGACGATGAAGGCGTGGCTGGTGCGGCACAGGATCAGCAG
GCTGCCCACAAGGAGCAGCACCTTGGCGAGTGTCGATTCCATGTCGACTG
ATAACT
BO06077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3564-PA | 627 | CG3564-RA | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 1172 | CG3564-RB | 96..719 | 642..19 | 3120 | 100 | Minus |
CHOp24-RA | 1104 | CG3564-RA | 96..719 | 642..19 | 3120 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4541216..4541554 | 501..163 | 1695 | 100 | Minus |
X | 23542271 | X | 4541907..4542053 | 165..19 | 735 | 100 | Minus |
X | 23542271 | X | 4541003..4541145 | 642..500 | 715 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 06:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 59..26 | 107 | 79.4 | Minus |
BO06077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:20 Download gff for
BO06077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:04 Download gff for
BO06077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:09 Download gff for
BO06077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 15..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:29:03 Download gff for
BO06077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 15..650 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:29:03 Download gff for
BO06077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4540997..4541144 | 501..650 | 97 | -> | Minus |
X | 4541217..4541551 | 166..500 | 100 | -> | Minus |
X | 4541907..4542056 | 15..165 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:09 Download gff for
BO06077.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4435030..4435177 | 501..650 | 97 | -> | Minus |
arm_X | 4435250..4435584 | 166..500 | 100 | -> | Minus |
arm_X | 4435940..4436089 | 15..165 | 98 | | Minus |
BO06077.5prime Sequence
656 bp (655 high quality bases) assembled on 2005-12-02
> BO06077.5prime
GAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTG
TGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGC
GTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCAC
CAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGG
ACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAG
GAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACAC
CGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGT
TCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGC
GAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTC
CGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCG
ACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTG
TGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGT
GTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGGCAAGCTTTC
TAGACC
BO06077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3564-PA | 627 | CG3564-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 1172 | CG3564-RB | 96..719 | 17..640 | 3120 | 100 | Plus |
CHOp24-RA | 1104 | CG3564-RA | 96..719 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4541216..4541554 | 158..496 | 1695 | 100 | Plus |
X | 23542271 | X | 4541907..4542053 | 494..640 | 735 | 100 | Plus |
X | 23542271 | X | 4541003..4541145 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 19:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 600..633 | 107 | 79.4 | Plus |
BO06077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:21 Download gff for
BO06077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:05 Download gff for
BO06077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3564-PA | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:03 Download gff for
BO06077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:43:41 Download gff for
BO06077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 90..722 | 9..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:43:41 Download gff for
BO06077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4540997..4541144 | 9..158 | 97 | -> | Plus |
X | 4541217..4541551 | 159..493 | 100 | -> | Plus |
X | 4541907..4542056 | 494..644 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:03 Download gff for
BO06077.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4435030..4435177 | 9..158 | 97 | -> | Plus |
arm_X | 4435250..4435584 | 159..493 | 100 | -> | Plus |
arm_X | 4435940..4436089 | 494..644 | 98 | | Plus |
BO06077.complete Sequence
658 bp (658 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630276
> BO06077.complete
GAAGTTATCAGTCGACATGGAATCGACACTCGCCAAGGTGCTGCTCCTTG
TGGGCAGCCTGCTGATCCTGTGCCGCACCAGCCACGCCTTCATCGTCAGC
GTGGACGCCCACAATGAGGAGTGCTTCTTCGAGAACGTCGAAGGCGGCAC
CAAGTTTGGCGTCACCTTCGAGGTGATCGACGGTGGCTTCCTAGACGTGG
ACATCAAGATCAGCGGCCCGGATAACCATGTGATGCACGAGAGCGAAAAG
GAGTCGTCCGGCAAGTACACCTTTGTGGCCCCCGCCAAGGGAACCTACAC
CGTGTGCTTCAACAACGAACGCAGCAGCATGACCCCCAAGCTGGTCATGT
TCTCCATCGACGTGGGTGACGCACCGCAACGTGCGCCCGGAGCACCCGGC
GAGGAGGAGGTGGGCCACACCAAGCTGGAGGACATGATTCGGGAGCTCTC
CGGCACGCTGACCAGTGTCAAGCACGAACAGGAGTACATGCATGTGCGCG
ACAAGATCCATCGTTCGGTGAACGAGAACACCAACTCGCGAGTGGTGCTG
TGGTCCACCTTCGAAGCCCTCGTCCTGGTCCTGATGACAGTGGGCCAGGT
GTACTACCTGAAACGCTTCTTCGAGGTCAAGCGCGTCGTGGCAAGCTTTC
TAGACCAT
BO06077.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 627 | CG3564-PB | 1..624 | 17..640 | 3120 | 100 | Plus |
CHOp24-RA | 627 | CG3564-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-RB | 1172 | CG3564-RB | 96..719 | 17..640 | 3120 | 100 | Plus |
CHOp24-RA | 1104 | CG3564-RA | 96..719 | 17..640 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4541216..4541554 | 158..496 | 1695 | 100 | Plus |
X | 23542271 | X | 4541907..4542053 | 494..640 | 735 | 100 | Plus |
X | 23542271 | X | 4541003..4541145 | 17..159 | 715 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 3518..3551 | 600..633 | 107 | 79.4 | Plus |
BO06077.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:35 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 1..627 | 17..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:25:45 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 88..720 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:11 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 96..719 | 17..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:35 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 88..720 | 9..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:19 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CHOp24-RA | 96..719 | 17..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:19 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4541003..4541144 | 17..158 | 100 | -> | Plus |
X | 4541217..4541551 | 159..493 | 100 | -> | Plus |
X | 4541907..4542053 | 494..642 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:11 Download gff for
BO06077.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4435036..4435177 | 17..158 | 100 | -> | Plus |
arm_X | 4435250..4435584 | 159..493 | 100 | -> | Plus |
arm_X | 4435940..4436086 | 494..642 | 98 | | Plus |
BO06077.pep Sequence
Translation from 16 to 658
> BO06077.pep
MESTLAKVLLLVGSLLILCRTSHAFIVSVDAHNEECFFENVEGGTKFGVT
FEVIDGGFLDVDIKISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNN
ERSSMTPKLVMFSIDVGDAPQRAPGAPGEEEVGHTKLEDMIRELSGTLTS
VKHEQEYMHVRDKIHRSVNENTNSRVVLWSTFEALVLVLMTVGQVYYLKR
FFEVKRVVASFLDH
BO06077.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CHOp24-PB | 208 | CG3564-PB | 1..208 | 1..208 | 1072 | 100 | Plus |
CHOp24-PA | 208 | CG3564-PA | 1..208 | 1..208 | 1072 | 100 | Plus |
CG9308-PA | 203 | CG9308-PA | 8..203 | 15..208 | 409 | 40.8 | Plus |
p24-1-PB | 210 | CG1967-PB | 4..197 | 7..202 | 238 | 27 | Plus |
p24-1-PA | 210 | CG1967-PA | 4..197 | 7..202 | 238 | 27 | Plus |