Clone Sequence Records
BO06078.3prime Sequence
903 bp (823 high quality bases) assembled on 2005-12-02
> BO06078.3prime
ATGGTCTAGAAAGCTTGCAGGGTAGTACGTCTTCTTGAACCTGTTCTTAT
TCTTAGGGACGTCTGGTCGGACCGCACGTGGAACATACTCCTTGTCATGT
GTGTCCAGCGTTCGCTGCCAAGGATTGATGTCCAGCTCGAAGAAGCGTCT
CTTAGCCTCCATGGCACGATTGTTGTTATCGATCTTGTATAGCTTCTCCC
ACAGGTAGATTTCGGGCAGCTCCAAGTGTCGCGGTCGGTTTGATGCCAAA
TATTTGAAGGTCTTATTGATAAAGTCACGCTGTTCGGCGTTCTCATAGGC
GGAAACGTCGGAGGCAACATACGGCTGCTGCTCCCCAATGCTCCGCTGAA
TCGATGGCGCATTGGCATAGAAATTGAGCAGGTGCCGCAGTGCGTTATCG
TTGAAATCAACGCACTTGCCGCTTGCCGAAATCTCGGCGTACAGTGGAAG
TGGCTTTGTACCGCGACAGAAGTTGACACGGGGATTTTCCGCCACGTTTG
TGCCGTGCAGCAGCAGCGTATTAAGCTGATACTCATAAAAGCTCCATTCC
CTGCCGTTCGTGATCACAGTTTGAGTGTTCATGGGATAGGTCAGTTCGTT
GTAGGTGTTGAAGCCATTGTAGTTCGCCTGGGCCAAAAGCCAGGCGTATG
ACGATTTAATCGCCAGCGAATGCAATGCCTCCAGCTGATCCTGCTCGCCG
AACGATTTCGGACGGATCTGCAGGTGTGCACGCGATTGAAATGAGAGCAG
GCCGAAGTTATTCTCATTTCCTTTGGGCCAATAGCCTGGCACATTGGTGG
CGTGCTGATGCTTGGTGCTGTAGCCGAGGGTTCGCGGGTCGTGCTTGAAA
CGGGGCAGCTGTTTGCTCAGCTCGAGGTTTTCGCTTTCCGCTTCCGTTTT
CCA
BO06078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8470-PA | 1674 | mRpS30-RA | 787..1671 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS30-RB | 2078 | CG8470-RB | 912..1796 | 903..19 | 4425 | 100 | Minus |
mRpS30-RA | 1829 | CG8470-RA | 912..1796 | 903..19 | 4425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15787122..15788006 | 903..19 | 4425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:54:53 has no hits.
BO06078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:22 Download gff for
BO06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8470-PA | 788..1674 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:07 Download gff for
BO06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8470-PA | 788..1674 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:02 Download gff for
BO06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 913..1799 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:43 Download gff for
BO06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 913..1799 | 15..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:43 Download gff for
BO06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15787123..15788009 | 15..902 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:02 Download gff for
BO06078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15681156..15682042 | 15..902 | 99 | | Minus |
BO06078.5prime Sequence
939 bp (804 high quality bases) assembled on 2005-12-02
> BO06078.5prime
GAAGTTATCAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAA
CGACGTACAAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGT
ACGGACGCAGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGC
GCGCAAGCAGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGC
CGACGGTGGAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGC
TTCAAGGTGGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCC
GCTCACGCAACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAA
CGGATAAGAAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCG
AGCGTGGATGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCT
CGAGTTTGCCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTG
CCGAATCGAACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTA
GAACAGCTGAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCA
CCTGGATGAGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGG
CCGTTGGCGGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGC
CGGGAATGGCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCA
GTATACGGGAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGC
CGTGGAAAACGGAAGCGGAAGCGAAAACCTCGAGCTGAGCAAACAGCTGC
CCCGTTTTCAGCACGACCCGCGAACCCCTCGCTACAGCACCAAGCATCAG
CACGCCCACCATGTGCCAGGCTATTGGCCCAAAGGAATG
BO06078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8470-PA | 1674 | mRpS30-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG8470-PA | 1674 | mRpS30-RA | 804..862 | 819..877 | 245 | 96.6 | Plus |
CG8470-PA | 1674 | mRpS30-RA | 896..922 | 911..937 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS30-RB | 2078 | CG8470-RB | 125..1047 | 16..937 | 4470 | 99.2 | Plus |
mRpS30-RA | 1829 | CG8470-RA | 125..1047 | 16..937 | 4470 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:13:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15786171..15786630 | 16..475 | 2300 | 100 | Plus |
X | 23542271 | X | 15786794..15787257 | 475..937 | 2150 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:13:12 has no hits.
BO06078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:23 Download gff for
BO06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8470-PA | 1..925 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:09 Download gff for
BO06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8470-PA | 1..925 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:12 Download gff for
BO06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 114..1050 | 3..939 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:56 Download gff for
BO06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 114..1050 | 3..939 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:56 Download gff for
BO06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15786160..15786629 | 3..474 | 98 | -> | Plus |
X | 15786794..15787260 | 475..939 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:12 Download gff for
BO06078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15680193..15680662 | 3..474 | 98 | -> | Plus |
arm_X | 15680827..15681293 | 475..939 | 98 | | Plus |
BO06078.complete Sequence
1705 bp (1705 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630277
> BO06078.complete
GAAGTTATCAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAA
CGACGTACAAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGT
ACGGACGCAGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGC
GCGCAAGCAGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGC
CGACGGTGGAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGC
TTCAAGGTGGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCC
GCTCACGCAACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAA
CGGATAAGAAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCG
AGCGTGGATGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCT
CGAGTTTGCCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTG
CCGAATCGAACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTA
GAACAGCTGAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCA
CCTGGATGAGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGG
CCGTTGGCGGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGC
CGGGAATGGCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCA
GTATACGGGAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGC
CGTGGAAAACGGAAGCGGAAAGCGAAAACCTCGAGCTGAGCAAACAGCTG
CCCCGTTTCAAGCACGACCCGCGAACCCTCGGCTACAGCACCAAGCATCA
GCACGCCACCAATGTGCCAGGCTATTGGCCCAAAGGAAATGAGAATAACT
TCGGCCTGCTCTCATTTCAATCGCGTGCACACCTGCAGATCCGTCCGAAA
TCGTTCGGCGAGCAGGATCAGCTGGAGGCATTGCATTCGCTGGCGATTAA
ATCGTCATACGCCTGGCTTTTGGCCCAGGCGAACTACAATGGCTTCAACA
CCTACAACGAACTGACCTATCCCATGAACACTCAAACTGTGATCACGAAC
GGCAGGGAATGGAGCTTTTATGAGTATCAGCTTAATACGCTGCTGCTGCA
CGGCACAAACGTGGCGGAAAATCCCCGTGTCAACTTCTGTCGCGGTACAA
AGCCACTTCCACTGTACGCCGAGATTTCGGCAAGCGGCAAGTGCGTTGAT
TTCAACGATAACGCACTGCGGCACCTGCTCAATTTCTATGCCAATGCGCC
ATCGATTCAGCGGAGCATTGGGGAGCAGCAGCCGTATGTTGCCTCCGACG
TTTCCGCCTATGAGAACGCCGAACAGCGTGACTTTATCAATAAGACCTTC
AAATATTTGGCATCAAACCGACCGCGACACTTGGAGCTGCCCGAAATCTA
CCTGTGGGAGAAGCTATACAAGATCGATAACAACAATCGTGCCATGGAGG
CTAAGAGACGCTTCTTCGAGCTGGACATCAATCCTTGGCAGCGAACGCTG
GACACACATGACAAGGAGTATGTTCCACGTGCGGTCCGACCAGACGTCCC
TAAGAATAAGAACAGGTTCAAGAAGACGTACTACCCTGCAAGCTTTCTAG
ACCAT
BO06078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS30-RB | 1674 | CG8470-PB | 1..1671 | 17..1687 | 8355 | 100 | Plus |
mRpS30-RA | 1674 | CG8470-PA | 1..1671 | 17..1687 | 8355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS30-RB | 2078 | CG8470-RB | 125..1796 | 16..1687 | 8360 | 100 | Plus |
mRpS30-RA | 1829 | CG8470-RA | 125..1796 | 16..1687 | 8360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15786794..15788006 | 475..1687 | 6065 | 100 | Plus |
X | 23542271 | X | 15786171..15786630 | 16..475 | 2300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:02:57 has no hits.
BO06078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:20 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 1..1674 | 17..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:23 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 90..1775 | 3..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:04 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 131..1796 | 22..1689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:20 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 90..1775 | 3..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:37 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS30-RA | 131..1796 | 22..1689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:37 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15786177..15786629 | 22..474 | 100 | -> | Plus |
X | 15786794..15788006 | 475..1689 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:04 Download gff for
BO06078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15680210..15680662 | 22..474 | 100 | -> | Plus |
arm_X | 15680827..15682039 | 475..1689 | 99 | | Plus |
BO06078.pep Sequence
Translation from 16 to 1705
> BO06078.pep
MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD
AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY
TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD
YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD
VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP
YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV
PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW
LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA
ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS
IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL
YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR
FKKTYYPASFLDH
BO06078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS30-PB | 557 | CG8470-PB | 1..557 | 1..557 | 2968 | 100 | Plus |
mRpS30-PA | 557 | CG8470-PA | 1..557 | 1..557 | 2968 | 100 | Plus |