Clone BO06078 Report

Search the DGRC for BO06078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS30-RA
Protein status:BO06078.pep: validated full length
Sequenced Size:1705

Clone Sequence Records

BO06078.3prime Sequence

903 bp (823 high quality bases) assembled on 2005-12-02

> BO06078.3prime
ATGGTCTAGAAAGCTTGCAGGGTAGTACGTCTTCTTGAACCTGTTCTTAT
TCTTAGGGACGTCTGGTCGGACCGCACGTGGAACATACTCCTTGTCATGT
GTGTCCAGCGTTCGCTGCCAAGGATTGATGTCCAGCTCGAAGAAGCGTCT
CTTAGCCTCCATGGCACGATTGTTGTTATCGATCTTGTATAGCTTCTCCC
ACAGGTAGATTTCGGGCAGCTCCAAGTGTCGCGGTCGGTTTGATGCCAAA
TATTTGAAGGTCTTATTGATAAAGTCACGCTGTTCGGCGTTCTCATAGGC
GGAAACGTCGGAGGCAACATACGGCTGCTGCTCCCCAATGCTCCGCTGAA
TCGATGGCGCATTGGCATAGAAATTGAGCAGGTGCCGCAGTGCGTTATCG
TTGAAATCAACGCACTTGCCGCTTGCCGAAATCTCGGCGTACAGTGGAAG
TGGCTTTGTACCGCGACAGAAGTTGACACGGGGATTTTCCGCCACGTTTG
TGCCGTGCAGCAGCAGCGTATTAAGCTGATACTCATAAAAGCTCCATTCC
CTGCCGTTCGTGATCACAGTTTGAGTGTTCATGGGATAGGTCAGTTCGTT
GTAGGTGTTGAAGCCATTGTAGTTCGCCTGGGCCAAAAGCCAGGCGTATG
ACGATTTAATCGCCAGCGAATGCAATGCCTCCAGCTGATCCTGCTCGCCG
AACGATTTCGGACGGATCTGCAGGTGTGCACGCGATTGAAATGAGAGCAG
GCCGAAGTTATTCTCATTTCCTTTGGGCCAATAGCCTGGCACATTGGTGG
CGTGCTGATGCTTGGTGCTGTAGCCGAGGGTTCGCGGGTCGTGCTTGAAA
CGGGGCAGCTGTTTGCTCAGCTCGAGGTTTTCGCTTTCCGCTTCCGTTTT
CCA

BO06078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8470-PA 1674 mRpS30-RA 787..1671 903..19 4425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-RB 2078 CG8470-RB 912..1796 903..19 4425 100 Minus
mRpS30-RA 1829 CG8470-RA 912..1796 903..19 4425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15787122..15788006 903..19 4425 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:54:53 has no hits.

BO06078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:22 Download gff for BO06078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8470-PA 788..1674 15..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:07 Download gff for BO06078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8470-PA 788..1674 15..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:02 Download gff for BO06078.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 913..1799 15..902 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:03:43 Download gff for BO06078.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 913..1799 15..902 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:03:43 Download gff for BO06078.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15787123..15788009 15..902 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:02 Download gff for BO06078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15681156..15682042 15..902 99   Minus

BO06078.5prime Sequence

939 bp (804 high quality bases) assembled on 2005-12-02

> BO06078.5prime
GAAGTTATCAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAA
CGACGTACAAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGT
ACGGACGCAGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGC
GCGCAAGCAGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGC
CGACGGTGGAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGC
TTCAAGGTGGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCC
GCTCACGCAACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAA
CGGATAAGAAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCG
AGCGTGGATGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCT
CGAGTTTGCCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTG
CCGAATCGAACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTA
GAACAGCTGAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCA
CCTGGATGAGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGG
CCGTTGGCGGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGC
CGGGAATGGCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCA
GTATACGGGAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGC
CGTGGAAAACGGAAGCGGAAGCGAAAACCTCGAGCTGAGCAAACAGCTGC
CCCGTTTTCAGCACGACCCGCGAACCCCTCGCTACAGCACCAAGCATCAG
CACGCCCACCATGTGCCAGGCTATTGGCCCAAAGGAATG

BO06078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8470-PA 1674 mRpS30-RA 1..804 17..820 4020 100 Plus
CG8470-PA 1674 mRpS30-RA 804..862 819..877 245 96.6 Plus
CG8470-PA 1674 mRpS30-RA 896..922 911..937 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-RB 2078 CG8470-RB 125..1047 16..937 4470 99.2 Plus
mRpS30-RA 1829 CG8470-RA 125..1047 16..937 4470 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15786171..15786630 16..475 2300 100 Plus
X 23542271 X 15786794..15787257 475..937 2150 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 16:13:12 has no hits.

BO06078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:23 Download gff for BO06078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8470-PA 1..925 17..939 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:09 Download gff for BO06078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8470-PA 1..925 17..939 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:12 Download gff for BO06078.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 114..1050 3..939 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:56 Download gff for BO06078.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 114..1050 3..939 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:56 Download gff for BO06078.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15786160..15786629 3..474 98 -> Plus
X 15786794..15787260 475..939 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:12 Download gff for BO06078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15680193..15680662 3..474 98 -> Plus
arm_X 15680827..15681293 475..939 98   Plus

BO06078.complete Sequence

1705 bp (1705 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630277

> BO06078.complete
GAAGTTATCAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAA
CGACGTACAAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGT
ACGGACGCAGAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGC
GCGCAAGCAGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGC
CGACGGTGGAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGC
TTCAAGGTGGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCC
GCTCACGCAACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAA
CGGATAAGAAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCAGCCG
AGCGTGGATGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCT
CGAGTTTGCCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTG
CCGAATCGAACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTA
GAACAGCTGAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCA
CCTGGATGAGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGG
CCGTTGGCGGCGTAGATCCTCCCAAGAACGTGCAGAAATCGAAGAAGGGC
CGGGAATGGCAAAAGGATATGGCAAACGAGAGCGTTGATCGGATGGTTCA
GTATACGGGAGCGCCGTATCTTGCCCTACGCCATCGCAAGCAATTGACGC
CGTGGAAAACGGAAGCGGAAAGCGAAAACCTCGAGCTGAGCAAACAGCTG
CCCCGTTTCAAGCACGACCCGCGAACCCTCGGCTACAGCACCAAGCATCA
GCACGCCACCAATGTGCCAGGCTATTGGCCCAAAGGAAATGAGAATAACT
TCGGCCTGCTCTCATTTCAATCGCGTGCACACCTGCAGATCCGTCCGAAA
TCGTTCGGCGAGCAGGATCAGCTGGAGGCATTGCATTCGCTGGCGATTAA
ATCGTCATACGCCTGGCTTTTGGCCCAGGCGAACTACAATGGCTTCAACA
CCTACAACGAACTGACCTATCCCATGAACACTCAAACTGTGATCACGAAC
GGCAGGGAATGGAGCTTTTATGAGTATCAGCTTAATACGCTGCTGCTGCA
CGGCACAAACGTGGCGGAAAATCCCCGTGTCAACTTCTGTCGCGGTACAA
AGCCACTTCCACTGTACGCCGAGATTTCGGCAAGCGGCAAGTGCGTTGAT
TTCAACGATAACGCACTGCGGCACCTGCTCAATTTCTATGCCAATGCGCC
ATCGATTCAGCGGAGCATTGGGGAGCAGCAGCCGTATGTTGCCTCCGACG
TTTCCGCCTATGAGAACGCCGAACAGCGTGACTTTATCAATAAGACCTTC
AAATATTTGGCATCAAACCGACCGCGACACTTGGAGCTGCCCGAAATCTA
CCTGTGGGAGAAGCTATACAAGATCGATAACAACAATCGTGCCATGGAGG
CTAAGAGACGCTTCTTCGAGCTGGACATCAATCCTTGGCAGCGAACGCTG
GACACACATGACAAGGAGTATGTTCCACGTGCGGTCCGACCAGACGTCCC
TAAGAATAAGAACAGGTTCAAGAAGACGTACTACCCTGCAAGCTTTCTAG
ACCAT

BO06078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-RB 1674 CG8470-PB 1..1671 17..1687 8355 100 Plus
mRpS30-RA 1674 CG8470-PA 1..1671 17..1687 8355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-RB 2078 CG8470-RB 125..1796 16..1687 8360 100 Plus
mRpS30-RA 1829 CG8470-RA 125..1796 16..1687 8360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15786794..15788006 475..1687 6065 100 Plus
X 23542271 X 15786171..15786630 16..475 2300 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:02:57 has no hits.

BO06078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:20 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 1..1674 17..1691 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:23 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 90..1775 3..1691 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:04 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 131..1796 22..1689 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:20 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 90..1775 3..1691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:11:37 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS30-RA 131..1796 22..1689 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:37 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
X 15786177..15786629 22..474 100 -> Plus
X 15786794..15788006 475..1689 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:04 Download gff for BO06078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15680210..15680662 22..474 100 -> Plus
arm_X 15680827..15682039 475..1689 99   Plus

BO06078.pep Sequence

Translation from 16 to 1705

> BO06078.pep
MLKLNRVRHLRTTYKRCLSGQSQLQLNSTDAEPAYPEIQDLSFKARKQKD
AANWHEEIRQVPTVEEKMIKINMPRYYGFKVVDFNDSKIPYNALPLTQHY
TRTVLEDLPSETDKKAQAKDSEQEQEQPSVDGLFKAARGDVIDALEFAHD
YYKHLEKQHNSAESNPVERERILTQIIVEQLNRALLQSLSEEYKHLDELD
VDYNPRHEAFWAVGGVDPPKNVQKSKKGREWQKDMANESVDRMVQYTGAP
YLALRHRKQLTPWKTEAESENLELSKQLPRFKHDPRTLGYSTKHQHATNV
PGYWPKGNENNFGLLSFQSRAHLQIRPKSFGEQDQLEALHSLAIKSSYAW
LLAQANYNGFNTYNELTYPMNTQTVITNGREWSFYEYQLNTLLLHGTNVA
ENPRVNFCRGTKPLPLYAEISASGKCVDFNDNALRHLLNFYANAPSIQRS
IGEQQPYVASDVSAYENAEQRDFINKTFKYLASNRPRHLELPEIYLWEKL
YKIDNNNRAMEAKRRFFELDINPWQRTLDTHDKEYVPRAVRPDVPKNKNR
FKKTYYPASFLDH

BO06078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS30-PB 557 CG8470-PB 1..557 1..557 2968 100 Plus
mRpS30-PA 557 CG8470-PA 1..557 1..557 2968 100 Plus