Clone BO06079 Report

Search the DGRC for BO06079

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptto-RA
Protein status:BO06079.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO06079.3prime Sequence

779 bp (778 high quality bases) assembled on 2005-12-02

> BO06079.3prime
ATGGTCTAGAAAGCTTGCCGATTCATCCGCAAAAAACTTGGCATACGGCA
GTTTGGAGAACACACCTTTGACGACGCCCAGGTAAAGTTTGCCAAAGGAT
CGGTCGATTGCTTTGGCCGTCTCCTTGTAAATGGCCTCCGAGTTTTCGTT
GAGGAAGACATTCATGTTGTCACCCAGCGCCTTGTCCCCATTGAACAGAT
TACTGAAATGGTAGTGGCTGGACTCCGGCTTCATCGTTATTTTCAGATCG
GTAACGTCCAGGTAGGTCTCCCCATTCTTCACCAGCGGTTTGCCCGAGAA
GCTGACGATTGCCCTGACGTTAACCATTGTCATGTTACTCTGTCCAGTTC
CGCTGATCGGTAGAATGAGTACCTTGCCCTGGATGTTATAGGGTCCAACG
AGTGAGAAGGTTTTCGTGACAATTTTCACTTCGTGCTTGGCGGTGAGATC
CCTTCCGAAACCCTTTACTTTGACGATCCTTTGGTCCTTGATCCCATACA
ACAGATTGTCGGTGAAGGTTAGAGTTATGCCCACGGGACTGGAGCTCTCA
CCCTGGCTAATAACCATCCGATCCACCTTCAACGGATCCAGCTGCATCAG
GTTCAGACCAGGATCCCCCTCCGCCGAGTTTTCGCTGAACAGGGTGTTGC
ACAGCTTCATGATACATTCGCCATCACCATACTTACAAGGTTTTGGATCT
TCGGGGAATTTGGCATCCACCGAGACCAAAAGGCACAAAACCACTGCGAA
TGCGATTGCGAACATGTCGACTGATAACT

BO06079.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11853-PA 750 to-RA 1..747 765..19 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..757 766..19 3740 100 Minus
to-RA 1038 CG11853-RA 10..757 766..19 3740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241172 324..19 1530 100 Minus
3R 32079331 3R 25240366..25240607 704..463 1210 100 Minus
3R 32079331 3R 25240674..25240817 463..320 705 99.3 Minus
3R 32079331 3R 25240189..25240250 766..705 310 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:51:48 has no hits.

BO06079.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:39:24 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:10 Download gff for BO06079.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11853-PA 1..750 16..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:10 Download gff for BO06079.3prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 11..766 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:30:08 Download gff for BO06079.3prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 11..766 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:30:08 Download gff for BO06079.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25240868..25241178 11..323 98   Minus
3R 25240366..25240606 464..704 100 -> Minus
3R 25240674..25240813 324..463 100 -> Minus
3R 25240189..25240250 705..766 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:10 Download gff for BO06079.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21065911..21065972 705..766 100 -> Minus
arm_3R 21066088..21066328 464..704 100 -> Minus
arm_3R 21066396..21066535 324..463 100 -> Minus
arm_3R 21066590..21066900 11..323 98   Minus

BO06079.5prime Sequence

779 bp (778 high quality bases) assembled on 2005-12-02

> BO06079.5prime
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGGCAAGCTTTCTAGACC

BO06079.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11853-PA 750 to-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..757 16..763 3740 100 Plus
to-RA 1038 CG11853-RA 10..757 16..763 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241172 458..763 1530 100 Plus
3R 32079331 3R 25240366..25240607 78..319 1210 100 Plus
3R 32079331 3R 25240674..25240817 319..462 705 99.3 Plus
3R 32079331 3R 25240189..25240250 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:58:09 has no hits.

BO06079.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:39:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:12 Download gff for BO06079.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11853-PA 1..750 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:17 Download gff for BO06079.5prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:29 Download gff for BO06079.5prime
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:29 Download gff for BO06079.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25240366..25240606 78..318 100 -> Plus
3R 25240674..25240813 319..458 100 -> Plus
3R 25240868..25241178 459..771 98   Plus
3R 25240189..25240250 16..77 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:17 Download gff for BO06079.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21065911..21065972 16..77 100 -> Plus
arm_3R 21066088..21066328 78..318 100 -> Plus
arm_3R 21066396..21066535 319..458 100 -> Plus
arm_3R 21066590..21066900 459..771 98   Plus

BO06079.complete Sequence

781 bp (781 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630278

> BO06079.complete
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGGCAAGCTTTCTAGACCAT

BO06079.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 750 CG11853-PB 1..747 17..763 3735 100 Plus
to-RA 750 CG11853-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
to-RB 1253 CG11853-RB 10..757 16..763 3740 100 Plus
to-RA 1038 CG11853-RA 10..757 16..763 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25240867..25241172 458..763 1530 100 Plus
3R 32079331 3R 25240366..25240607 78..319 1210 100 Plus
3R 32079331 3R 25240674..25240817 319..462 705 99.3 Plus
3R 32079331 3R 25240189..25240250 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:06:09 has no hits.

BO06079.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:58 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 1..750 17..766 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:16 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:46 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 16..757 22..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:58 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 10..763 16..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:18 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
to-RA 16..757 22..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:18 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25240674..25240813 319..458 100 -> Plus
3R 25240868..25241172 459..765 99   Plus
3R 25240195..25240250 22..77 100 -> Plus
3R 25240366..25240606 78..318 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:46 Download gff for BO06079.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21066088..21066328 78..318 100 -> Plus
arm_3R 21065917..21065972 22..77 100 -> Plus
arm_3R 21066396..21066535 319..458 100 -> Plus
arm_3R 21066590..21066894 459..765 99   Plus

BO06079.pep Sequence

Translation from 16 to 781

> BO06079.pep
MFAIAFAVVLCLLVSVDAKFPEDPKPCKYGDGECIMKLCNTLFSENSAEG
DPGLNLMQLDPLKVDRMVISQGESSSPVGITLTFTDNLLYGIKDQRIVKV
KGFGRDLTAKHEVKIVTKTFSLVGPYNIQGKVLILPISGTGQSNMTMVNV
RAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKALGDN
MNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFADESA
SFLDH

BO06079.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
to-PB 249 CG11853-PB 1..249 1..249 1279 100 Plus
to-PA 249 CG11853-PA 1..249 1..249 1279 100 Plus
CG11852-PA 250 CG11852-PA 3..249 1..247 341 30.6 Plus
CG11854-PB 250 CG11854-PB 23..248 20..245 316 31.7 Plus
CG2650-PA 260 CG2650-PA 8..260 1..248 294 29.5 Plus