Clone Sequence Records
BO06079.3prime Sequence
779 bp (778 high quality bases) assembled on 2005-12-02
> BO06079.3prime
ATGGTCTAGAAAGCTTGCCGATTCATCCGCAAAAAACTTGGCATACGGCA
GTTTGGAGAACACACCTTTGACGACGCCCAGGTAAAGTTTGCCAAAGGAT
CGGTCGATTGCTTTGGCCGTCTCCTTGTAAATGGCCTCCGAGTTTTCGTT
GAGGAAGACATTCATGTTGTCACCCAGCGCCTTGTCCCCATTGAACAGAT
TACTGAAATGGTAGTGGCTGGACTCCGGCTTCATCGTTATTTTCAGATCG
GTAACGTCCAGGTAGGTCTCCCCATTCTTCACCAGCGGTTTGCCCGAGAA
GCTGACGATTGCCCTGACGTTAACCATTGTCATGTTACTCTGTCCAGTTC
CGCTGATCGGTAGAATGAGTACCTTGCCCTGGATGTTATAGGGTCCAACG
AGTGAGAAGGTTTTCGTGACAATTTTCACTTCGTGCTTGGCGGTGAGATC
CCTTCCGAAACCCTTTACTTTGACGATCCTTTGGTCCTTGATCCCATACA
ACAGATTGTCGGTGAAGGTTAGAGTTATGCCCACGGGACTGGAGCTCTCA
CCCTGGCTAATAACCATCCGATCCACCTTCAACGGATCCAGCTGCATCAG
GTTCAGACCAGGATCCCCCTCCGCCGAGTTTTCGCTGAACAGGGTGTTGC
ACAGCTTCATGATACATTCGCCATCACCATACTTACAAGGTTTTGGATCT
TCGGGGAATTTGGCATCCACCGAGACCAAAAGGCACAAAACCACTGCGAA
TGCGATTGCGAACATGTCGACTGATAACT
BO06079.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11853-PA | 750 | to-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..757 | 766..19 | 3740 | 100 | Minus |
to-RA | 1038 | CG11853-RA | 10..757 | 766..19 | 3740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241172 | 324..19 | 1530 | 100 | Minus |
3R | 32079331 | 3R | 25240366..25240607 | 704..463 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 25240674..25240817 | 463..320 | 705 | 99.3 | Minus |
3R | 32079331 | 3R | 25240189..25240250 | 766..705 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:51:48 has no hits.
BO06079.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:39:24 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:10 Download gff for
BO06079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11853-PA | 1..750 | 16..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:10 Download gff for
BO06079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 11..766 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:30:08 Download gff for
BO06079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 11..766 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:30:08 Download gff for
BO06079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240868..25241178 | 11..323 | 98 | | Minus |
3R | 25240366..25240606 | 464..704 | 100 | -> | Minus |
3R | 25240674..25240813 | 324..463 | 100 | -> | Minus |
3R | 25240189..25240250 | 705..766 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:10 Download gff for
BO06079.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21065911..21065972 | 705..766 | 100 | -> | Minus |
arm_3R | 21066088..21066328 | 464..704 | 100 | -> | Minus |
arm_3R | 21066396..21066535 | 324..463 | 100 | -> | Minus |
arm_3R | 21066590..21066900 | 11..323 | 98 | | Minus |
BO06079.5prime Sequence
779 bp (778 high quality bases) assembled on 2005-12-02
> BO06079.5prime
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGGCAAGCTTTCTAGACC
BO06079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11853-PA | 750 | to-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..757 | 16..763 | 3740 | 100 | Plus |
to-RA | 1038 | CG11853-RA | 10..757 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241172 | 458..763 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 25240366..25240607 | 78..319 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 25240674..25240817 | 319..462 | 705 | 99.3 | Plus |
3R | 32079331 | 3R | 25240189..25240250 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:09 has no hits.
BO06079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 02:39:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:12 Download gff for
BO06079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11853-PA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:17 Download gff for
BO06079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:29 Download gff for
BO06079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:29 Download gff for
BO06079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240366..25240606 | 78..318 | 100 | -> | Plus |
3R | 25240674..25240813 | 319..458 | 100 | -> | Plus |
3R | 25240868..25241178 | 459..771 | 98 | | Plus |
3R | 25240189..25240250 | 16..77 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:17 Download gff for
BO06079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21065911..21065972 | 16..77 | 100 | -> | Plus |
arm_3R | 21066088..21066328 | 78..318 | 100 | -> | Plus |
arm_3R | 21066396..21066535 | 319..458 | 100 | -> | Plus |
arm_3R | 21066590..21066900 | 459..771 | 98 | | Plus |
BO06079.complete Sequence
781 bp (781 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630278
> BO06079.complete
GAAGTTATCAGTCGACATGTTCGCAATCGCATTCGCAGTGGTTTTGTGCC
TTTTGGTCTCGGTGGATGCCAAATTCCCCGAAGATCCAAAACCTTGTAAG
TATGGTGATGGCGAATGTATCATGAAGCTGTGCAACACCCTGTTCAGCGA
AAACTCGGCGGAGGGGGATCCTGGTCTGAACCTGATGCAGCTGGATCCGT
TGAAGGTGGATCGGATGGTTATTAGCCAGGGTGAGAGCTCCAGTCCCGTG
GGCATAACTCTAACCTTCACCGACAATCTGTTGTATGGGATCAAGGACCA
AAGGATCGTCAAAGTAAAGGGTTTCGGAAGGGATCTCACCGCCAAGCACG
AAGTGAAAATTGTCACGAAAACCTTCTCACTCGTTGGACCCTATAACATC
CAGGGCAAGGTACTCATTCTACCGATCAGCGGAACTGGACAGAGTAACAT
GACAATGGTTAACGTCAGGGCAATCGTCAGCTTCTCGGGCAAACCGCTGG
TGAAGAATGGGGAGACCTACCTGGACGTTACCGATCTGAAAATAACGATG
AAGCCGGAGTCCAGCCACTACCATTTCAGTAATCTGTTCAATGGGGACAA
GGCGCTGGGTGACAACATGAATGTCTTCCTCAACGAAAACTCGGAGGCCA
TTTACAAGGAGACGGCCAAAGCAATCGACCGATCCTTTGGCAAACTTTAC
CTGGGCGTCGTCAAAGGTGTGTTCTCCAAACTGCCGTATGCCAAGTTTTT
TGCGGATGAATCGGCAAGCTTTCTAGACCAT
BO06079.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 750 | CG11853-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
to-RA | 750 | CG11853-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-RB | 1253 | CG11853-RB | 10..757 | 16..763 | 3740 | 100 | Plus |
to-RA | 1038 | CG11853-RA | 10..757 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25240867..25241172 | 458..763 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 25240366..25240607 | 78..319 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 25240674..25240817 | 319..462 | 705 | 99.3 | Plus |
3R | 32079331 | 3R | 25240189..25240250 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:09 has no hits.
BO06079.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:58 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 1..750 | 17..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:16 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:46 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 16..757 | 22..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:58 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 10..763 | 16..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:18 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
to-RA | 16..757 | 22..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:18 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25240674..25240813 | 319..458 | 100 | -> | Plus |
3R | 25240868..25241172 | 459..765 | 99 | | Plus |
3R | 25240195..25240250 | 22..77 | 100 | -> | Plus |
3R | 25240366..25240606 | 78..318 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:46 Download gff for
BO06079.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21066088..21066328 | 78..318 | 100 | -> | Plus |
arm_3R | 21065917..21065972 | 22..77 | 100 | -> | Plus |
arm_3R | 21066396..21066535 | 319..458 | 100 | -> | Plus |
arm_3R | 21066590..21066894 | 459..765 | 99 | | Plus |
BO06079.pep Sequence
Translation from 16 to 781
> BO06079.pep
MFAIAFAVVLCLLVSVDAKFPEDPKPCKYGDGECIMKLCNTLFSENSAEG
DPGLNLMQLDPLKVDRMVISQGESSSPVGITLTFTDNLLYGIKDQRIVKV
KGFGRDLTAKHEVKIVTKTFSLVGPYNIQGKVLILPISGTGQSNMTMVNV
RAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKALGDN
MNVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFADESA
SFLDH
BO06079.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
to-PB | 249 | CG11853-PB | 1..249 | 1..249 | 1279 | 100 | Plus |
to-PA | 249 | CG11853-PA | 1..249 | 1..249 | 1279 | 100 | Plus |
CG11852-PA | 250 | CG11852-PA | 3..249 | 1..247 | 341 | 30.6 | Plus |
CG11854-PB | 250 | CG11854-PB | 23..248 | 20..245 | 316 | 31.7 | Plus |
CG2650-PA | 260 | CG2650-PA | 8..260 | 1..248 | 294 | 29.5 | Plus |