Clone BO06080 Report

Search the DGRC for BO06080

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9356-RA
Protein status:BO06080.pep: validated full length
Sequenced Size:1378

Clone Sequence Records

BO06080.3prime Sequence

377 bp (337 high quality bases) assembled on 2005-12-02

> BO06080.3prime
ATGGTCTAGAAAGCTTGCTTGCATTTTATCTAGCTGCTGATTATCGCAGG
CAGGAGTTACTTCGGATGCAGGTGATTGCACGTAGTGGGGTCGCTGGGCC
TGGTCGAAAAGTGCTCGTATGGCTTCATCGGTGGCCATCAGGGGCTGACT
AATGAATTCCAAGGCCCTAACCGCGTACTTCTCCGCCTCACAAAGTGGAC
TTGTGCTGGCGCTGGACAACTTTAGTGTCTCCTCGGGAATGCCCACGCCA
GTGTGCAGGACCATGCGTTGGAGAATGTTAAGGTTTTCGGCACTTAGGCT
GATTACATCGGTGGCGGGCAGGTTGAGGAAACGAATCTTGGCCAGGAACT
TCAGTTGCTTAAGCATATCTAGCTGAA

BO06080.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PA 1347 CG9356-RA 986..1344 377..19 1795 100 Minus
CG9356-PB 1347 CG9356-RB 986..1344 377..19 1795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1519 CG9356-RB 1098..1456 377..19 1795 100 Minus
CG9356-RA 1578 CG9356-RA 1157..1515 377..19 1795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9402842..9403054 165..377 1065 100 Plus
3R 32079331 3R 9402627..9402774 19..166 740 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:51:33 has no hits.

BO06080.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:27 Download gff for BO06080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PA 988..1347 18..375 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:13 Download gff for BO06080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PB 988..1347 18..375 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:26 Download gff for BO06080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 1157..1521 10..377 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:22:35 Download gff for BO06080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 1157..1521 10..377 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:22:35 Download gff for BO06080.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9402620..9402773 10..165 97 <- Plus
3R 9402843..9403054 166..377 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:26 Download gff for BO06080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228342..5228495 10..165 97 <- Plus
arm_3R 5228565..5228776 166..377 100   Plus

BO06080.5prime Sequence

846 bp (768 high quality bases) assembled on 2005-12-02

> BO06080.5prime
GAAGTTATCAGTCGACATGGAAGCGAATGAAAGTGCGATGCCAGGAACGG
ACAAATCCCAAGCTTGTCGCACCAGCGGCGATGGCATGGAGCAACCGGAA
AACAGTGGAGCGGCCAAAACAGAGAGCGAAATCCCAGCGAGTGCTGATGT
GGACAACAAGGTAAAGAGGCCACAATTATCGCGAAAAGACAGCTCCGTTG
TCCAGGAGGCCGTCATGGGCAGGAAGACATCAACTAGTAGCGGCCACTCC
TCAAATTTGCCCCTTCCTGGCTTGCATACCCTGTACAGACGACCCGAGAA
CGTCACCCGGAGTTTGGCGCCCGTTGTGCCCAAGGGGGAGCTGGTCCAGA
TGCGGCCAAGACTGGTCACCAGCGCGGACTCGCTGCCCGAACATAAGAAG
ACCAAGGCGCCCAAATTCGTGCCCTACGAACCATATCCGGGTGCCGTGAA
TCCCATGATCTCTGAGCCAACGAATAAACACAAAATCCATCGGGATAAGA
ACAACCTGGACATTGCGGTGCTGGTGGATCAGGTGTCCACGCTGCGCACA
CAGGAATTGGAGACTGAGACAACGGATATTAAAGAAACAGACACAGCCAG
TAGCCATGAGGTAAACTCACTTAAAGAGGAGCTGGCCAAGATGCGCGATG
AACGCAATTACTTTCAAGCCCAGTATAAGTTCCAAACGCAGGTGAATAGC
GAGCTGAAGAGCCTGCTGGTGGCCTCCGTGGGCGAGGATCTGCAGACACG
GGTTAATCTCCTCACCGAGGACAAACTACAGCTGGCCAGAGCTCTATTGG
ACACTGCCAACAATTTGACCACCCACACCGAGCAGATTGAGTTCCT

BO06080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PA 1347 CG9356-RA 1..830 17..846 4150 100 Plus
CG9356-PB 1347 CG9356-RB 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1519 CG9356-RB 113..942 17..846 4150 100 Plus
CG9356-RA 1578 CG9356-RA 172..1001 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9403210..9404039 846..17 4150 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:48:49 has no hits.

BO06080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:28 Download gff for BO06080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PA 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:14 Download gff for BO06080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-PB 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:37 Download gff for BO06080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 167..1001 9..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:02:26 Download gff for BO06080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 167..1001 9..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:02:26 Download gff for BO06080.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9403210..9404044 9..846 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:37 Download gff for BO06080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228932..5229766 9..846 99   Minus

BO06080.complete Sequence

1378 bp (1378 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630279

> BO06080.complete
GAAGTTATCAGTCGACATGGAAGCGAATGAAAGTGCGATGCCAGGAACGG
ACAAATCCCAAGCTTGTCGCACCAGCGGCGATGGCATGGAGCAACCGGAA
AACAGTGGAGCGGCCAAAACAGAGAGCGAAATCCCAGCGAGTGCTGATGT
GGACAACAAGGTAAAGAGGCCACAATTATCGCGAAAAGACAGCTCCGTTG
TCCAGGAGGCCGTCATGGGCAGGAAGACATCAACTAGTAGCGGCCACTCC
TCAAATTTGCCCCTTCCTGGCTTGCATACCCTGTACAGACGACCCGAGAA
CGTCACCCGGAGTTTGGCGCCCGTTGTGCCCAAGGGGGAGCTGGTCCAGA
TGCGGCCAAGACTGGTCACCAGCGCGGACTCGCTGCCCGAACATAAGAAG
ACCAAGGCGCCCAAATTCGTGCCCTACGAACCATATCCGGGTGCCGTGAA
TCCCATGATCTCTGAGCCAACGAATAAACACAAAATCCATCGGGATAAGA
ACAACCTGGACATTGCGGTGCTGGTGGATCAGGTGTCCACGCTGCGCACA
CAGGAATTGGAGACTGAGACAACGGATATTAAAGAAACAGACACAGCCAG
TAGCCATGAGGTAAACTCACTTAAAGAGGAGCTGGCCAAGATGCGCGATG
AACGCAATTACTTTCAAGCCCAGTATAAGTTCCAAACGCAGGTGAATAGC
GAGCTGAAGAGCCTGCTGGTGGCCTCCGTGGGCGAGGATCTGCAGACACG
GGTTAATCTCCTCACCGAGGACAAACTACAGCTGGCCAGAGCTCTATTGG
ACACTGCCAACAATTTGACCACCCACACCGAGCAGATTGAGTTCCTGGCC
GGCCAGTGTGAGGTCTGGCGGTCCAAATTCCTCGCCAGCAGCGTTATGGT
TGAGGAGTTAGCCCGCTGGAAAGCCGATCTCACGCAGAAGAATCAGCTAT
TGAACGAGTCAACGAAGCAACTGCTTCATGCCACCCATCAGATCCGCGAA
ATTCAGCTAGATATGCTTAAGCAACTGAAGTTCCTGGCCAAGATTCGTTT
CCTCAACCTGCCCGCCACCGATGTAATCAGCCTAAGTGCCGAAAACCTTA
ACATTCTCCAACGCATGGTCCTGCACACTGGCGTGGGCATTCCCGAGGAG
ACACTAAAGTTGTCCAGCGCCAGCACAAGTCCACTTTGTGAGGCGGAGAA
GTACGCGGTTAGGGCCTTGGAATTCATTAGTCAGCCCCTGATGGCCACCG
ATGAAGCCATACGAGCACTTTTCGACCAGGCCCAGCGACCCCACTACGTG
CAATCACCTGCATCCGAAGTAACTCCTGCCTGCGATAATCAGCAGCTAGA
TAAAATGCAAGCAAGCTTTCTAGACCAT

BO06080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1347 CG9356-PB 1..1344 17..1360 6720 100 Plus
CG9356-RA 1347 CG9356-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-RB 1519 CG9356-RB 113..1456 17..1360 6720 100 Plus
CG9356-RA 1578 CG9356-RA 172..1515 17..1360 6720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9402842..9404039 1214..17 5990 100 Minus
3R 32079331 3R 9402627..9402774 1360..1213 740 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:20:34 has no hits.

BO06080.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:21 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 1..1347 17..1361 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:24 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 93..1447 9..1369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:21 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 172..1515 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:21 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RB 93..1447 9..1369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:46 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
CG9356-RA 172..1515 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:46 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9402625..9402773 1214..1362 98 <- Minus
3R 9402843..9404039 17..1213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:21 Download gff for BO06080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5228347..5228495 1214..1362 98 <- Minus
arm_3R 5228565..5229761 17..1213 100   Minus

BO06080.pep Sequence

Translation from 16 to 1378

> BO06080.pep
MEANESAMPGTDKSQACRTSGDGMEQPENSGAAKTESEIPASADVDNKVK
RPQLSRKDSSVVQEAVMGRKTSTSSGHSSNLPLPGLHTLYRRPENVTRSL
APVVPKGELVQMRPRLVTSADSLPEHKKTKAPKFVPYEPYPGAVNPMISE
PTNKHKIHRDKNNLDIAVLVDQVSTLRTQELETETTDIKETDTASSHEVN
SLKEELAKMRDERNYFQAQYKFQTQVNSELKSLLVASVGEDLQTRVNLLT
EDKLQLARALLDTANNLTTHTEQIEFLAGQCEVWRSKFLASSVMVEELAR
WKADLTQKNQLLNESTKQLLHATHQIREIQLDMLKQLKFLAKIRFLNLPA
TDVISLSAENLNILQRMVLHTGVGIPEETLKLSSASTSPLCEAEKYAVRA
LEFISQPLMATDEAIRALFDQAQRPHYVQSPASEVTPACDNQQLDKMQAS
FLDH

BO06080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9356-PB 448 CG9356-PB 1..448 1..448 2258 100 Plus
CG9356-PA 448 CG9356-PA 1..448 1..448 2258 100 Plus