Clone Sequence Records
BO06081.3prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-02
> BO06081.3prime
ATGGTCTAGAAAGCTTGCATATTCCGCACGGCGTCTATAGTTCCGAATGC
TGTTCGCCAAGCAACAGGCGAAAACGAATCCCACAAATTCGATGGCGGCG
ATGACCAGACCGGCATACTTGATGATGTCGCTGTTCCTGTCCCAGAACTC
AACGAAGGTGACCTTGCATCCCCGCCGGTAGACGGTCTCCCAGCGGCAGT
TGTTGGTGTCGCTGCAGCAGGAGGGAGGGAACTTGCCCTGGTAGGCGTAG
TCGGTGTAGCCACTGCGTCCGCAGCATTTCATGCTGATCTGAATCGCGTC
CATGTAGTCGGAACGACTGGTGCGATGGTTCCAGGCCTTCTCGACCACGT
CGCCCATGATCTCCAGGTACTTGTCCTTCTGCACCCACATGTAGATCACC
AAAGCCAGTTGGCCAATCATCAGGACGAACAGCAAGATCGAGTACGTCAT
GGACATGCAGTAGGATTCCCGAATGGCTCCGCAGCAGCCGAACCAGGAAA
TCAGCAGGATGATGGTGCCCAGGATGATCATCGTTACGGGCACCTGCTGG
GTTCGCAGGGCTTCCGCGAAGTCATCCATGTTACGGACTTTGCTGAACAG
CAGAGCTCCGAATACGATCAGCAATATGCCGCATATCGAACAGAGCAAAT
TAAATATAAATAGGATATATTTAACCATGGAGATTCCGCAGCTCATGTCG
ACTGATAACT
BO06081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18817-PA | 681 | Tsp42Ea-RA | 1..678 | 696..19 | 3390 | 100 | Minus |
| CG18817-PB | 681 | Tsp42Ea-RB | 1..678 | 696..19 | 3390 | 100 | Minus |
| CG18817-PC | 681 | Tsp42Ea-RC | 1..678 | 696..19 | 3390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:54:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-RC | 1107 | CG18817-RC | 144..821 | 696..19 | 3390 | 100 | Minus |
| Tsp42Ea-RB | 1113 | CG18817-RB | 150..827 | 696..19 | 3390 | 100 | Minus |
| Tsp42Ea-RA | 1118 | CG18817-RA | 155..832 | 696..19 | 3390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6997159..6997353 | 282..88 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 7003448..7003642 | 282..88 | 975 | 100 | Minus |
| 2R | 25286936 | 2R | 6996675..6996867 | 637..445 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 7002964..7003156 | 637..445 | 965 | 100 | Minus |
| 2R | 25286936 | 2R | 6996930..6997092 | 445..283 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 7003219..7003381 | 445..283 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 6997617..6997685 | 87..19 | 345 | 100 | Minus |
| 2R | 25286936 | 2R | 7003905..7003973 | 87..19 | 345 | 100 | Minus |
| 2R | 25286936 | 2R | 6994425..6994484 | 696..637 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:54:13 has no hits.
BO06081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:29 Download gff for
BO06081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18817-PB | 1..681 | 15..696 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:15 Download gff for
BO06081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18817-PC | 1..681 | 15..696 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:42 Download gff for
BO06081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 146..835 | 15..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:01 Download gff for
BO06081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 146..835 | 15..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:01 Download gff for
BO06081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6994416..6994484 | 637..705 | 95 | -> | Minus |
| 2R | 6996676..6996867 | 445..636 | 100 | -> | Minus |
| 2R | 6996931..6997092 | 283..444 | 100 | -> | Minus |
| 2R | 6997159..6997353 | 88..282 | 100 | -> | Minus |
| 2R | 6997617..6997688 | 15..87 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:42 Download gff for
BO06081.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2881921..2881989 | 637..705 | 95 | -> | Minus |
| arm_2R | 2884181..2884372 | 445..636 | 100 | -> | Minus |
| arm_2R | 2884436..2884597 | 283..444 | 100 | -> | Minus |
| arm_2R | 2884664..2884858 | 88..282 | 100 | -> | Minus |
| arm_2R | 2885122..2885193 | 15..87 | 97 | | Minus |
BO06081.5prime Sequence
710 bp (709 high quality bases) assembled on 2005-12-02
> BO06081.5prime
GAAGTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCC
TATTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTA
TTCGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGA
AGCCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCA
TCATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCC
TACTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGG
CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGG
AGATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGT
TCCGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAG
TGGCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCA
GCGACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAG
GTCACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGC
CGGTCTGGTCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTT
GCTTGGCGAACAGCATTCGGAACTATAGACGCCGTGCGGAATATGCAAGC
TTTCTAGACC
BO06081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18817-PA | 681 | Tsp42Ea-RA | 1..678 | 17..694 | 3390 | 100 | Plus |
| CG18817-PB | 681 | Tsp42Ea-RB | 1..678 | 17..694 | 3390 | 100 | Plus |
| CG18817-PC | 681 | Tsp42Ea-RC | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-RC | 1107 | CG18817-RC | 144..821 | 17..694 | 3390 | 100 | Plus |
| Tsp42Ea-RB | 1113 | CG18817-RB | 150..827 | 17..694 | 3390 | 100 | Plus |
| Tsp42Ea-RA | 1118 | CG18817-RA | 155..832 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6997159..6997353 | 431..625 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 7003448..7003642 | 431..625 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 6996675..6996867 | 76..268 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 7002964..7003156 | 76..268 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 6996930..6997092 | 268..430 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 7003219..7003381 | 268..430 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 6997617..6997685 | 626..694 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 7003905..7003973 | 626..694 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 6994425..6994484 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:55:03 has no hits.
BO06081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:30 Download gff for
BO06081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18817-PB | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:17 Download gff for
BO06081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18817-PC | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:45 Download gff for
BO06081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 146..835 | 8..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:14 Download gff for
BO06081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 146..835 | 8..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:14 Download gff for
BO06081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6996676..6996867 | 77..268 | 100 | -> | Plus |
| 2R | 6996931..6997092 | 269..430 | 100 | -> | Plus |
| 2R | 6997159..6997353 | 431..625 | 100 | -> | Plus |
| 2R | 6997617..6997688 | 626..698 | 97 | | Plus |
| 2R | 6994416..6994484 | 8..76 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:45 Download gff for
BO06081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2881921..2881989 | 8..76 | 95 | -> | Plus |
| arm_2R | 2884181..2884372 | 77..268 | 100 | -> | Plus |
| arm_2R | 2884436..2884597 | 269..430 | 100 | -> | Plus |
| arm_2R | 2884664..2884858 | 431..625 | 100 | -> | Plus |
| arm_2R | 2885122..2885193 | 626..698 | 97 | | Plus |
BO06081.complete Sequence
712 bp (712 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630280
> BO06081.complete
GAAGTTATCAGTCGACATGAGCTGCGGAATCTCCATGGTTAAATATATCC
TATTTATATTTAATTTGCTCTGTTCGATATGCGGCATATTGCTGATCGTA
TTCGGAGCTCTGCTGTTCAGCAAAGTCCGTAACATGGATGACTTCGCGGA
AGCCCTGCGAACCCAGCAGGTGCCCGTAACGATGATCATCCTGGGCACCA
TCATCCTGCTGATTTCCTGGTTCGGCTGCTGCGGAGCCATTCGGGAATCC
TACTGCATGTCCATGACGTACTCGATCTTGCTGTTCGTCCTGATGATTGG
CCAACTGGCTTTGGTGATCTACATGTGGGTGCAGAAGGACAAGTACCTGG
AGATCATGGGCGACGTGGTCGAGAAGGCCTGGAACCATCGCACCAGTCGT
TCCGACTACATGGACGCGATTCAGATCAGCATGAAATGCTGCGGACGCAG
TGGCTACACCGACTACGCCTACCAGGGCAAGTTCCCTCCCTCCTGCTGCA
GCGACACCAACAACTGCCGCTGGGAGACCGTCTACCGGCGGGGATGCAAG
GTCACCTTCGTTGAGTTCTGGGACAGGAACAGCGACATCATCAAGTATGC
CGGTCTGGTCATCGCCGCCATCGAATTTGTGGGATTCGTTTTCGCCTGTT
GCTTGGCGAACAGCATTCGGAACTATAGACGCCGTGCGGAATATGCAAGC
TTTCTAGACCAT
BO06081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-RC | 681 | CG18817-PC | 1..678 | 17..694 | 3390 | 100 | Plus |
| Tsp42Ea-RB | 681 | CG18817-PB | 1..678 | 17..694 | 3390 | 100 | Plus |
| Tsp42Ea-RA | 681 | CG18817-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-RC | 1107 | CG18817-RC | 144..821 | 17..694 | 3390 | 100 | Plus |
| Tsp42Ea-RB | 1113 | CG18817-RB | 150..827 | 17..694 | 3390 | 100 | Plus |
| Tsp42Ea-RA | 1118 | CG18817-RA | 155..832 | 17..694 | 3390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6997159..6997353 | 431..625 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 7003448..7003642 | 431..625 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 6996675..6996867 | 76..268 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 7002964..7003156 | 76..268 | 965 | 100 | Plus |
| 2R | 25286936 | 2R | 6996930..6997092 | 268..430 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 7003219..7003381 | 268..430 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 6997617..6997685 | 626..694 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 7003905..7003973 | 626..694 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 6994425..6994484 | 17..76 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:23:43 has no hits.
BO06081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:59 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RC | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:17 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RC | 140..829 | 8..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:13:57 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 155..832 | 17..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:00 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RC | 140..829 | 8..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:09:46 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Ea-RA | 155..832 | 17..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:09:46 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6994425..6994484 | 17..76 | 100 | -> | Plus |
| 2R | 6996676..6996867 | 77..268 | 100 | -> | Plus |
| 2R | 6996931..6997092 | 269..430 | 100 | -> | Plus |
| 2R | 6997159..6997353 | 431..625 | 100 | -> | Plus |
| 2R | 6997617..6997685 | 626..696 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:13:57 Download gff for
BO06081.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2881930..2881989 | 17..76 | 100 | -> | Plus |
| arm_2R | 2884181..2884372 | 77..268 | 100 | -> | Plus |
| arm_2R | 2884436..2884597 | 269..430 | 100 | -> | Plus |
| arm_2R | 2884664..2884858 | 431..625 | 100 | -> | Plus |
| arm_2R | 2885122..2885190 | 626..696 | 97 | | Plus |
BO06081.pep Sequence
Translation from 16 to 712
> BO06081.pep
MSCGISMVKYILFIFNLLCSICGILLIVFGALLFSKVRNMDDFAEALRTQ
QVPVTMIILGTIILLISWFGCCGAIRESYCMSMTYSILLFVLMIGQLALV
IYMWVQKDKYLEIMGDVVEKAWNHRTSRSDYMDAIQISMKCCGRSGYTDY
AYQGKFPPSCCSDTNNCRWETVYRRGCKVTFVEFWDRNSDIIKYAGLVIA
AIEFVGFVFACCLANSIRNYRRRAEYASFLDH
BO06081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Ea-PC | 226 | CG18817-PC | 1..226 | 1..226 | 1208 | 100 | Plus |
| Tsp42Ea-PB | 226 | CG18817-PB | 1..226 | 1..226 | 1208 | 100 | Plus |
| Tsp42Ea-PA | 226 | CG18817-PA | 1..226 | 1..226 | 1208 | 100 | Plus |
| Tsp42Ed-PB | 227 | CG12846-PB | 1..227 | 1..226 | 530 | 41.9 | Plus |
| Tsp42Ed-PA | 227 | CG12846-PA | 1..227 | 1..226 | 530 | 41.9 | Plus |
