Clone Sequence Records
BO06082.3prime Sequence
794 bp (793 high quality bases) assembled on 2005-12-02
> BO06082.3prime
ATGGTCTAGAAAGCTTGCACGTATTTTCGGATATGGAGCCGAGCGATATC
GCACGCTTTCACGAGATCGGGATCCAGTTTCGTAGTGAGCAGATGAATGT
GATCCCGAGCCCGAGGTGGTTGGTCGATATGACGATGATGAACGACCGTT
GCTTGGTTTTGCTGGATAGGCCGCCGCGTAGGAAGAGGAGGACGAGTGGG
GGTGATACTCACGCCGATAGTCGCGCTCGTAGGAGCTACTGTCATACTGG
GCGTGGTGGGTCGAGTGCTTTGATGTTTGGGGCGGCGGTGTGGCATAGCG
ATCATATTCTCCATGGTGGTCATATAGCTCGTGGTCCCGTGATCTGTGCG
TCTTTACGATCCCATAGTTGGGATCGTCCATCACATATCGAGCCTTCTCC
AGAATCGAATAGACTTTGGGCTTTGAAGAAGCAGGGGGCGGGGTGCGGGA
ACTGTAGGCGCCATGATCGCCATAGGATTTGGAATAGTGGTGAGACTTCT
TGTACATGCGCTCCTTGCCATCCATCTCGCGTAGTTGCTCCAACCGAATG
TCGTCGTTGGCGTCGGGTATCATAAACTTGCGGATCTCGCCTAGCGCATA
GCTGATCCTGTGATAGGCCTCCGCTGGAGGGGCCACCGTGGATATCTCCA
CGTGCAAATCGCGGCTGAGATGGGCGTACTTTGGATTTCCGGAGCTGCGA
AGCTCCTCCTCCTTACCGTGGTCGCGCATCGAGTTGCGCCCCATAACCAC
CATTTTGCACATAGTCTCTTCCTGCAGCTGCCGCAGTGTGTTGC
BO06082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3613-PA | 1191 | qkr58E-1-RA | 413..1188 | 794..19 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RA | 1592 | CG3613-RA | 536..1311 | 794..19 | 3880 | 100 | Minus |
qkr58E-1-RC | 2122 | CG3613-RC | 536..1168 | 794..162 | 3165 | 100 | Minus |
qkr58E-1-RD | 1902 | CG3613-RD | 536..1117 | 794..213 | 2910 | 100 | Minus |
qkr58E-1-RC | 2122 | CG3613-RC | 1927..2071 | 163..19 | 725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414570..22414918 | 446..794 | 1745 | 100 | Plus |
2R | 25286936 | 2R | 22414101..22414286 | 162..347 | 930 | 100 | Plus |
2R | 25286936 | 2R | 22413198..22413342 | 19..163 | 725 | 100 | Plus |
2R | 25286936 | 2R | 22414408..22414510 | 344..446 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:13 has no hits.
BO06082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:31 Download gff for
BO06082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 413..1191 | 15..794 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:18 Download gff for
BO06082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 413..1191 | 15..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:19 Download gff for
BO06082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 536..1314 | 15..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:46 Download gff for
BO06082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 536..1314 | 15..794 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:46 Download gff for
BO06082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22413195..22413340 | 15..161 | 98 | <- | Plus |
2R | 22414101..22414282 | 162..343 | 100 | <- | Plus |
2R | 22414408..22414509 | 344..445 | 100 | <- | Plus |
2R | 22414570..22414918 | 446..794 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:19 Download gff for
BO06082.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18300700..18300845 | 15..161 | 98 | <- | Plus |
arm_2R | 18301606..18301787 | 162..343 | 100 | <- | Plus |
arm_2R | 18301913..18302014 | 344..445 | 100 | <- | Plus |
arm_2R | 18302075..18302423 | 446..794 | 100 | | Plus |
BO06082.5prime Sequence
703 bp (702 high quality bases) assembled on 2005-12-02
> BO06082.5prime
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GAT
BO06082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3613-PA | 1191 | qkr58E-1-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
CG4021-PA | 960 | CG4021-RA | 286..326 | 389..429 | 155 | 95.1 | Plus |
CG3584-PA | 963 | qkr58E-3-RA | 283..326 | 389..432 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RD | 1902 | CG3613-RD | 124..810 | 17..703 | 3435 | 100 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 124..810 | 17..703 | 3435 | 100 | Plus |
qkr58E-1-RA | 1592 | CG3613-RA | 124..810 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414644..22415075 | 703..272 | 2160 | 100 | Minus |
2R | 25286936 | 2R | 22415140..22415395 | 272..17 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 17471170..17471359 | 393..582 | 260 | 75.8 | Plus |
2R | 25286936 | 2R | 22595151..22595289 | 393..531 | 245 | 78.4 | Plus |
2R | 25286936 | 2R | 22466682..22466811 | 393..522 | 230 | 78.5 | Plus |
2R | 25286936 | 2R | 21773807..21773943 | 393..529 | 205 | 76.6 | Plus |
2R | 25286936 | 2R | 22651051..22651189 | 393..531 | 200 | 76.3 | Plus |
2R | 25286936 | 2R | 22410945..22411053 | 501..393 | 185 | 78 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:49:44 has no hits.
BO06082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:32 Download gff for
BO06082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:20 Download gff for
BO06082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3613-PA | 1..687 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:42 Download gff for
BO06082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..810 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:39 Download gff for
BO06082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..810 | 17..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:39 Download gff for
BO06082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22414644..22415074 | 273..703 | 100 | <- | Minus |
2R | 22415140..22415395 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:42 Download gff for
BO06082.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18302149..18302579 | 273..703 | 100 | <- | Minus |
arm_2R | 18302645..18302900 | 17..272 | 100 | | Minus |
BO06082.complete Sequence
1222 bp (1222 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630281
> BO06082.complete
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTA
TGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAA
AGCCCAAAGTCTATTCGATTCTGGAGAAGGCTCGATATGTGATGGACGAT
CCCAACTATGGGATCGTAAAGACGCACAGATCACGGGACCACGAGCTATA
TGACCACCATGGAGAATATGATCGCTATGCCACACCGCCGCCCCAAACAT
CAAAGCACTCGACCCACCACGCCCAGTATGACAGTAGCTCCTACGAGCGC
GACTATCGGCGTGAGTATCACCCCCACTCGTCCTCCTCTTCCTACGCGGC
GGCCTATCCAGCAAAACCAAGCAACGGTCGTTCATCATCGTCATATCGAC
CAACCACCTCGGGCTCGGGATCACATTCATCTGCTCACTACGAAACTGGA
TCCCGATCTCGTGAAAGCGTGCGATATCGCTCGGCTCCATATCCGAAAAT
ACGTGCAAGCTTTCTAGACCAT
BO06082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RA | 1191 | CG3613-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
qkr58E-1-RC | 1074 | CG3613-PC | 1..1045 | 17..1061 | 5225 | 100 | Plus |
qkr58E-1-RD | 1140 | CG3613-PD | 1..994 | 17..1010 | 4970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-RA | 1592 | CG3613-RA | 124..1311 | 17..1204 | 5940 | 100 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 124..1168 | 17..1061 | 5225 | 100 | Plus |
qkr58E-1-RD | 1902 | CG3613-RD | 124..1117 | 17..1010 | 4970 | 100 | Plus |
qkr58E-1-RC | 2122 | CG3613-RC | 1927..2071 | 1060..1204 | 725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22414570..22415075 | 777..272 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 22415140..22415395 | 272..17 | 1280 | 100 | Minus |
2R | 25286936 | 2R | 22414101..22414286 | 1061..876 | 930 | 100 | Minus |
2R | 25286936 | 2R | 22413198..22413342 | 1204..1060 | 725 | 100 | Minus |
2R | 25286936 | 2R | 22414408..22414510 | 879..777 | 515 | 100 | Minus |
2R | 25286936 | 2R | 17471170..17471359 | 393..582 | 260 | 75.8 | Plus |
2R | 25286936 | 2R | 22595151..22595289 | 393..531 | 245 | 78.4 | Plus |
2R | 25286936 | 2R | 22466682..22466811 | 393..522 | 230 | 78.5 | Plus |
2R | 25286936 | 2R | 21773807..21773943 | 393..529 | 205 | 76.6 | Plus |
2R | 25286936 | 2R | 22651051..22651189 | 393..531 | 200 | 76.3 | Plus |
2R | 25286936 | 2R | 22410945..22411053 | 501..393 | 185 | 78 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:57:59 has no hits.
BO06082.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:01 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 1..1191 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:19 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 148..1338 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:15 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..1311 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:01 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 148..1338 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:56 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qkr58E-1-RA | 124..1311 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:56 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22413196..22413340 | 1062..1206 | 98 | <- | Minus |
2R | 22414101..22414282 | 880..1061 | 100 | <- | Minus |
2R | 22414408..22414509 | 778..879 | 100 | <- | Minus |
2R | 22414570..22415074 | 273..777 | 100 | <- | Minus |
2R | 22415140..22415395 | 17..272 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:15 Download gff for
BO06082.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18300701..18300845 | 1062..1206 | 98 | <- | Minus |
arm_2R | 18301606..18301787 | 880..1061 | 100 | <- | Minus |
arm_2R | 18301913..18302014 | 778..879 | 100 | <- | Minus |
arm_2R | 18302075..18302579 | 273..777 | 100 | <- | Minus |
arm_2R | 18302645..18302900 | 17..272 | 100 | | Minus |
BO06082.pep Sequence
Translation from 16 to 1222
> BO06082.pep
MPRDYDRDYNEDAADYKRKRRDEEPAATGAPETPEADGGGHTTSHAALRD
TPQLNEKTNAYLQECLLEKKTLEKKHIITKRLLDDEVEKILVSGRIPKPE
IYANVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLRQLQEETMC
KMVVMGRNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHR
ISYALGEIRKFMIPDANDDIRLEQLREMDGKERMYKKSHHYSKSYGDHGA
YSSRTPPPASSKPKVYSILEKARYVMDDPNYGIVKTHRSRDHELYDHHGE
YDRYATPPPQTSKHSTHHAQYDSSSYERDYRREYHPHSSSSSYAAAYPAK
PSNGRSSSSYRPTTSGSGSHSSAHYETGSRSRESVRYRSAPYPKIRASFL
DH
BO06082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qkr58E-1-PA | 396 | CG3613-PA | 1..396 | 1..396 | 2108 | 100 | Plus |
qkr58E-1-PD | 379 | CG3613-PD | 1..379 | 1..396 | 1982 | 95.5 | Plus |
qkr58E-1-PC | 357 | CG3613-PC | 1..350 | 1..350 | 1865 | 99.7 | Plus |
qkr54B-PD | 428 | CG4816-PD | 14..425 | 9..374 | 730 | 43.4 | Plus |
qkr54B-PB | 428 | CG4816-PB | 14..425 | 9..374 | 730 | 43.4 | Plus |