Clone BO06082 Report

Search the DGRC for BO06082

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:82
Vector:pDNR-Dual
Associated Gene/Transcriptqkr58E-1-RA
Protein status:BO06082.pep: validated full length
Sequenced Size:1222

Clone Sequence Records

BO06082.3prime Sequence

794 bp (793 high quality bases) assembled on 2005-12-02

> BO06082.3prime
ATGGTCTAGAAAGCTTGCACGTATTTTCGGATATGGAGCCGAGCGATATC
GCACGCTTTCACGAGATCGGGATCCAGTTTCGTAGTGAGCAGATGAATGT
GATCCCGAGCCCGAGGTGGTTGGTCGATATGACGATGATGAACGACCGTT
GCTTGGTTTTGCTGGATAGGCCGCCGCGTAGGAAGAGGAGGACGAGTGGG
GGTGATACTCACGCCGATAGTCGCGCTCGTAGGAGCTACTGTCATACTGG
GCGTGGTGGGTCGAGTGCTTTGATGTTTGGGGCGGCGGTGTGGCATAGCG
ATCATATTCTCCATGGTGGTCATATAGCTCGTGGTCCCGTGATCTGTGCG
TCTTTACGATCCCATAGTTGGGATCGTCCATCACATATCGAGCCTTCTCC
AGAATCGAATAGACTTTGGGCTTTGAAGAAGCAGGGGGCGGGGTGCGGGA
ACTGTAGGCGCCATGATCGCCATAGGATTTGGAATAGTGGTGAGACTTCT
TGTACATGCGCTCCTTGCCATCCATCTCGCGTAGTTGCTCCAACCGAATG
TCGTCGTTGGCGTCGGGTATCATAAACTTGCGGATCTCGCCTAGCGCATA
GCTGATCCTGTGATAGGCCTCCGCTGGAGGGGCCACCGTGGATATCTCCA
CGTGCAAATCGCGGCTGAGATGGGCGTACTTTGGATTTCCGGAGCTGCGA
AGCTCCTCCTCCTTACCGTGGTCGCGCATCGAGTTGCGCCCCATAACCAC
CATTTTGCACATAGTCTCTTCCTGCAGCTGCCGCAGTGTGTTGC

BO06082.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3613-PA 1191 qkr58E-1-RA 413..1188 794..19 3880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RA 1592 CG3613-RA 536..1311 794..19 3880 100 Minus
qkr58E-1-RC 2122 CG3613-RC 536..1168 794..162 3165 100 Minus
qkr58E-1-RD 1902 CG3613-RD 536..1117 794..213 2910 100 Minus
qkr58E-1-RC 2122 CG3613-RC 1927..2071 163..19 725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414570..22414918 446..794 1745 100 Plus
2R 25286936 2R 22414101..22414286 162..347 930 100 Plus
2R 25286936 2R 22413198..22413342 19..163 725 100 Plus
2R 25286936 2R 22414408..22414510 344..446 515 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:58:13 has no hits.

BO06082.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:31 Download gff for BO06082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 413..1191 15..794 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:18 Download gff for BO06082.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 413..1191 15..794 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:19 Download gff for BO06082.3prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 536..1314 15..794 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:32:46 Download gff for BO06082.3prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 536..1314 15..794 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:32:46 Download gff for BO06082.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22413195..22413340 15..161 98 <- Plus
2R 22414101..22414282 162..343 100 <- Plus
2R 22414408..22414509 344..445 100 <- Plus
2R 22414570..22414918 446..794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:19 Download gff for BO06082.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18300700..18300845 15..161 98 <- Plus
arm_2R 18301606..18301787 162..343 100 <- Plus
arm_2R 18301913..18302014 344..445 100 <- Plus
arm_2R 18302075..18302423 446..794 100   Plus

BO06082.5prime Sequence

703 bp (702 high quality bases) assembled on 2005-12-02

> BO06082.5prime
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GAT

BO06082.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3613-PA 1191 qkr58E-1-RA 1..687 17..703 3435 100 Plus
CG4021-PA 960 CG4021-RA 286..326 389..429 155 95.1 Plus
CG3584-PA 963 qkr58E-3-RA 283..326 389..432 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RD 1902 CG3613-RD 124..810 17..703 3435 100 Plus
qkr58E-1-RC 2122 CG3613-RC 124..810 17..703 3435 100 Plus
qkr58E-1-RA 1592 CG3613-RA 124..810 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414644..22415075 703..272 2160 100 Minus
2R 25286936 2R 22415140..22415395 272..17 1280 100 Minus
2R 25286936 2R 17471170..17471359 393..582 260 75.8 Plus
2R 25286936 2R 22595151..22595289 393..531 245 78.4 Plus
2R 25286936 2R 22466682..22466811 393..522 230 78.5 Plus
2R 25286936 2R 21773807..21773943 393..529 205 76.6 Plus
2R 25286936 2R 22651051..22651189 393..531 200 76.3 Plus
2R 25286936 2R 22410945..22411053 501..393 185 78 Minus
Blast to na_te.dros performed on 2015-02-13 00:49:44 has no hits.

BO06082.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:32 Download gff for BO06082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:20 Download gff for BO06082.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3613-PA 1..687 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:42 Download gff for BO06082.5prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..810 17..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:39 Download gff for BO06082.5prime
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..810 17..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:39 Download gff for BO06082.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22414644..22415074 273..703 100 <- Minus
2R 22415140..22415395 17..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:42 Download gff for BO06082.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18302149..18302579 273..703 100 <- Minus
arm_2R 18302645..18302900 17..272 100   Minus

BO06082.complete Sequence

1222 bp (1222 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630281

> BO06082.complete
GAAGTTATCAGTCGACATGCCGCGCGACTACGACAGAGACTACAACGAGG
ACGCCGCCGACTACAAGCGGAAGCGACGCGACGAGGAGCCAGCGGCTACC
GGTGCTCCAGAGACCCCTGAGGCGGATGGCGGCGGACACACCACCAGCCA
CGCCGCCCTGCGGGACACGCCCCAGCTGAATGAGAAGACCAACGCGTATC
TGCAGGAGTGCCTGCTGGAAAAGAAGACGCTCGAGAAGAAGCACATCATC
ACCAAGCGCTTACTTGACGACGAGGTGGAGAAGATCTTGGTCAGCGGACG
CATACCAAAGCCCGAGATATATGCCAACGTGTACAGCGAAAAGCCCATCC
GCGTGGCCCAGAAAGTCTTGTTCCCCATCAAGGAGTACCCCAAGTTCAAT
TTCGTTGGCAAGATCCTGGGGCCCAAGGGCAACACACTGCGGCAGCTGCA
GGAAGAGACTATGTGCAAAATGGTGGTTATGGGGCGCAACTCGATGCGCG
ACCACGGTAAGGAGGAGGAGCTTCGCAGCTCCGGAAATCCAAAGTACGCC
CATCTCAGCCGCGATTTGCACGTGGAGATATCCACGGTGGCCCCTCCAGC
GGAGGCCTATCACAGGATCAGCTATGCGCTAGGCGAGATCCGCAAGTTTA
TGATACCCGACGCCAACGACGACATTCGGTTGGAGCAACTACGCGAGATG
GATGGCAAGGAGCGCATGTACAAGAAGTCTCACCACTATTCCAAATCCTA
TGGCGATCATGGCGCCTACAGTTCCCGCACCCCGCCCCCTGCTTCTTCAA
AGCCCAAAGTCTATTCGATTCTGGAGAAGGCTCGATATGTGATGGACGAT
CCCAACTATGGGATCGTAAAGACGCACAGATCACGGGACCACGAGCTATA
TGACCACCATGGAGAATATGATCGCTATGCCACACCGCCGCCCCAAACAT
CAAAGCACTCGACCCACCACGCCCAGTATGACAGTAGCTCCTACGAGCGC
GACTATCGGCGTGAGTATCACCCCCACTCGTCCTCCTCTTCCTACGCGGC
GGCCTATCCAGCAAAACCAAGCAACGGTCGTTCATCATCGTCATATCGAC
CAACCACCTCGGGCTCGGGATCACATTCATCTGCTCACTACGAAACTGGA
TCCCGATCTCGTGAAAGCGTGCGATATCGCTCGGCTCCATATCCGAAAAT
ACGTGCAAGCTTTCTAGACCAT

BO06082.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RA 1191 CG3613-PA 1..1188 17..1204 5940 100 Plus
qkr58E-1-RC 1074 CG3613-PC 1..1045 17..1061 5225 100 Plus
qkr58E-1-RD 1140 CG3613-PD 1..994 17..1010 4970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:01
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-RA 1592 CG3613-RA 124..1311 17..1204 5940 100 Plus
qkr58E-1-RC 2122 CG3613-RC 124..1168 17..1061 5225 100 Plus
qkr58E-1-RD 1902 CG3613-RD 124..1117 17..1010 4970 100 Plus
qkr58E-1-RC 2122 CG3613-RC 1927..2071 1060..1204 725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22414570..22415075 777..272 2530 100 Minus
2R 25286936 2R 22415140..22415395 272..17 1280 100 Minus
2R 25286936 2R 22414101..22414286 1061..876 930 100 Minus
2R 25286936 2R 22413198..22413342 1204..1060 725 100 Minus
2R 25286936 2R 22414408..22414510 879..777 515 100 Minus
2R 25286936 2R 17471170..17471359 393..582 260 75.8 Plus
2R 25286936 2R 22595151..22595289 393..531 245 78.4 Plus
2R 25286936 2R 22466682..22466811 393..522 230 78.5 Plus
2R 25286936 2R 21773807..21773943 393..529 205 76.6 Plus
2R 25286936 2R 22651051..22651189 393..531 200 76.3 Plus
2R 25286936 2R 22410945..22411053 501..393 185 78 Minus
Blast to na_te.dros performed on 2014-11-27 00:57:59 has no hits.

BO06082.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:01 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 1..1191 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:19 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 148..1338 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:15 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..1311 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:01 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 148..1338 17..1208 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:56 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
qkr58E-1-RA 124..1311 17..1206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:56 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22413196..22413340 1062..1206 98 <- Minus
2R 22414101..22414282 880..1061 100 <- Minus
2R 22414408..22414509 778..879 100 <- Minus
2R 22414570..22415074 273..777 100 <- Minus
2R 22415140..22415395 17..272 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:15 Download gff for BO06082.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18300701..18300845 1062..1206 98 <- Minus
arm_2R 18301606..18301787 880..1061 100 <- Minus
arm_2R 18301913..18302014 778..879 100 <- Minus
arm_2R 18302075..18302579 273..777 100 <- Minus
arm_2R 18302645..18302900 17..272 100   Minus

BO06082.pep Sequence

Translation from 16 to 1222

> BO06082.pep
MPRDYDRDYNEDAADYKRKRRDEEPAATGAPETPEADGGGHTTSHAALRD
TPQLNEKTNAYLQECLLEKKTLEKKHIITKRLLDDEVEKILVSGRIPKPE
IYANVYSEKPIRVAQKVLFPIKEYPKFNFVGKILGPKGNTLRQLQEETMC
KMVVMGRNSMRDHGKEEELRSSGNPKYAHLSRDLHVEISTVAPPAEAYHR
ISYALGEIRKFMIPDANDDIRLEQLREMDGKERMYKKSHHYSKSYGDHGA
YSSRTPPPASSKPKVYSILEKARYVMDDPNYGIVKTHRSRDHELYDHHGE
YDRYATPPPQTSKHSTHHAQYDSSSYERDYRREYHPHSSSSSYAAAYPAK
PSNGRSSSSYRPTTSGSGSHSSAHYETGSRSRESVRYRSAPYPKIRASFL
DH

BO06082.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
qkr58E-1-PA 396 CG3613-PA 1..396 1..396 2108 100 Plus
qkr58E-1-PD 379 CG3613-PD 1..379 1..396 1982 95.5 Plus
qkr58E-1-PC 357 CG3613-PC 1..350 1..350 1865 99.7 Plus
qkr54B-PD 428 CG4816-PD 14..425 9..374 730 43.4 Plus
qkr54B-PB 428 CG4816-PB 14..425 9..374 730 43.4 Plus