Clone BO06083 Report

Search the DGRC for BO06083

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptRpp30-RA
Protein status:BO06083.pep: validated full length
Sequenced Size:925

Clone Sequence Records

BO06083.3prime Sequence

923 bp (782 high quality bases) assembled on 2005-12-02

> BO06083.3prime
ATGGTCTAGAAAGCTTGCCGCCACTTTAAGTCGTTTAATAGCGTGCTCAG
TTCCGTCTTTGACTTCAAATGCATCCGCTTTTCCAATTTGCGGTTTTAGA
CCCTTCATTTCGTCTTCGGTGCTTTTCTCGTCCTCAGAGCTATCCGAGTA
TATTATGGGACCGTTTCCTTTGAGAAACATGATGGTTTTTCCCAGACGAC
GCGCCTCAGCCTTCAGGAAAAGTTCCCGGCAGTGCCCGTCCACAGCATTT
TTCCCTTGGTCCTCTGATAGGCCGAAGATAAAGGCCAAATTAGCAACGTC
GTAAGGTCCTCTCAGCTGGAATTCGTGCGCCGCACCACTGCTGAAGATAA
CGTTCTTGGACTTCCCTTTGGTGCAATAGTTCTGGGCGATCTTTATCATG
TCCTTCCTGTTATTCGAATCGCAGATAGATGGAGCGTATTTAATTTCGAA
GAACATGCCCCGACGGACTGCCACCTGGTATGCTTTTCGGTTTACCAAGA
GTCGGGACCCAGCCACAGGATCAAAAGTTATCAAGTCCCCATTGAAGGCA
GTGCAGCAGTGCGTCAGGGCGGCATCTGTTTTCGGTTGGCCAGCGATGAG
ATTGAACTTCCGCAGATTATGGGAGACACTCATCGCGTGGGCCACATTGA
CGTCTACGTAGAGAATGGTGATTCTCTGCAGGATTCTCAGCTTGTCCTGG
AACTCCTTGCGCAGATGCTCGATCTTATGAGGCTCGGGAAACATCTCGGA
CCCACGTTTGCCCGGATCCTTTTTGCTGTGGTCGAAACTCTGGTCGATGG
CCACTGTTTTGTAGCCCGTTTCCACCAGCTCGTTAAGCAGGGCCCGCAAC
ACGGAGTCGTCCTTGTTGTATGGTATGCTGAAATCGAAAAATGGGCTTGT
TTGCTCCATGTCGACTGATAACT

BO06083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11606-PA 894 Rpp30-RA 1..891 909..19 4405 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp30-RB 1105 CG11606-RB 57..947 909..19 4425 99.8 Minus
Rpp30-RA 981 CG11606-RA 57..947 909..19 4425 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 251526..251802 286..562 1385 100 Plus
2L 23513712 2L 251197..251464 19..286 1340 100 Plus
2L 23513712 2L 251979..252166 631..818 940 100 Plus
2L 23513712 2L 252227..252317 819..909 425 97.8 Plus
2L 23513712 2L 251856..251925 562..631 350 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:14:18 has no hits.

BO06083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:33 Download gff for BO06083.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpp30-PA 1..894 18..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:21 Download gff for BO06083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11606-PA 1..894 18..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:15 Download gff for BO06083.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 57..954 10..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:52 Download gff for BO06083.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 57..954 10..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:52 Download gff for BO06083.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 252227..252317 819..909 97   Plus
2L 251189..251464 10..286 98 <- Plus
2L 251527..251801 287..561 100 <- Plus
2L 251856..251924 562..630 100 <- Plus
2L 251979..252166 631..818 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:15 Download gff for BO06083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 251189..251464 10..286 98 <- Plus
arm_2L 251527..251801 287..561 100 <- Plus
arm_2L 251856..251924 562..630 100 <- Plus
arm_2L 251979..252166 631..818 100 <- Plus
arm_2L 252227..252317 819..909 97   Plus

BO06083.5prime Sequence

902 bp (752 high quality bases) assembled on 2005-12-02

> BO06083.5prime
GAAGTTATCAGTCGACATGGAGCAAACAAGGCCATTTTACGATTTCAGCA
TACCATACAACAAGGACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTG
GTGGAAACGGGCTACAAAACAGTGGCCATCGACCAGAGTTTCGACCACAG
CAAAAAGGATCCGGGCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATA
AGATCGAGCATCTGCGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAG
AGAATCACCATTCTCTACGTAGACGTCAATGTGGCCCACGCGATGAGTGT
CTCCCATAATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAG
ATGCCGCCCTGACGCACTGCTGCACTGCCTTCAATGGGGACTTGATAACT
TTTGATCCTGTGGCTGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCA
GGTGGCAGTCCGTCGGGGCATGTTCTTCGAAATTAAATACGCTCCATCTA
TCTGCGATTCGAATAACAGGAAGGACATGATAAAGATCGCCCAGAACTAT
TGCACCAAAGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCA
CGAATTCCAGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCT
TCGGCCTATCAGAGGACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGG
GAACTTTTCCTGAAGGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTT
TCTCAAAGGAAACGGTCCCATAATATACTCGGATAGCTCTGAGGACGAGA
AAAGCACCGAAGACGAAATGAANGGTCTAAAACCGCAAATTGGAAAAGCG
GATGCATTTGAAGTCAAAGACGGAACTGAGCACGCTATTAAACGACTTAA
AG

BO06083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11606-PA 894 Rpp30-RA 1..886 17..902 4411 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp30-RB 1105 CG11606-RB 57..942 17..902 4419 99.9 Plus
Rpp30-RA 981 CG11606-RA 57..942 17..902 4419 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 251526..251802 640..364 1385 100 Minus
2L 23513712 2L 251202..251464 902..640 1304 99.6 Minus
2L 23513712 2L 251979..252166 295..108 940 100 Minus
2L 23513712 2L 252227..252317 107..17 455 100 Minus
2L 23513712 2L 251856..251925 364..295 350 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:02:22 has no hits.

BO06083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:34 Download gff for BO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpp30-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:23 Download gff for BO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11606-PA 1..886 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:43 Download gff for BO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 57..942 17..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:51 Download gff for BO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 57..942 17..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:51 Download gff for BO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 251202..251464 640..902 99 <- Minus
2L 251527..251801 365..639 100 <- Minus
2L 251856..251924 296..364 100 <- Minus
2L 251979..252166 108..295 100 <- Minus
2L 252227..252317 17..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:43 Download gff for BO06083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 251202..251464 640..902 99 <- Minus
arm_2L 251527..251801 365..639 100 <- Minus
arm_2L 251856..251924 296..364 100 <- Minus
arm_2L 251979..252166 108..295 100 <- Minus
arm_2L 252227..252317 17..107 100   Minus

BO06083.complete Sequence

925 bp (925 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630282

> BO06083.complete
GAAGTTATCAGTCGACATGGAGCAAACAAGGCCATTTTACGATTTCAGCA
TACCATACAACAAGGACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTG
GTGGAAACGGGCTACAAAACAGTGGCCATCGACCAGAGTTTCGACCACAG
CAAAAAGGATCCGGGCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATA
AGATCGAGCATCTGCGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAG
AGAATCACCATTCTCTACGTAGACGTCAATGTGGCCCACGCGATGAGTGT
CTCCCATAATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAG
ATGCCGCCCTGACGCACTGCTGCACTGCCTTCAATGGGGACTTGATAACT
TTTGATCCTGTGGCTGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCA
GGTGGCAGTCCGTCGGGGCATGTTCTTCGAAATTAAATACGCTCCATCTA
TCTGCGATTCGAATAACAGGAAGGACATGATAAAGATCGCCCAGAACTAT
TGCACCAAAGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCA
CGAATTCCAGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCT
TCGGCCTATCAGAGGACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGG
GAACTTTTCCTGAAGGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTT
TCTCAAAGGAAACGGTCCCATAATATACTCGGATAGCTCTGAGGACGAGA
AAAGCACCGAAGACGAAATGAAGGGTCTAAAACCGCAAATTGGAAAAGCG
GATGCATTTGAAGTCAAAGACGGAACTGAGCACGCTATTAAACGACTTAA
AGTGGCGGCAAGCTTTCTAGACCAT

BO06083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp30-RB 894 CG11606-PB 1..891 17..907 4455 100 Plus
Rpp30-RA 894 CG11606-PA 1..891 17..907 4455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp30-RB 1105 CG11606-RB 57..947 17..907 4455 100 Plus
Rpp30-RA 981 CG11606-RA 57..947 17..907 4455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 251526..251802 640..364 1385 100 Minus
2L 23513712 2L 251197..251464 907..640 1340 100 Minus
2L 23513712 2L 251979..252166 295..108 940 100 Minus
2L 23513712 2L 252227..252317 107..17 455 100 Minus
2L 23513712 2L 251856..251925 364..295 350 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:44:56 has no hits.

BO06083.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:02 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 1..894 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:21 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 15..912 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:42 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 57..947 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:02 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 15..912 17..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:50 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
Rpp30-RA 57..947 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:50 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
2L 251979..252166 108..295 100 <- Minus
2L 252227..252317 17..107 100   Minus
2L 251193..251464 640..909 99 <- Minus
2L 251527..251801 365..639 100 <- Minus
2L 251856..251924 296..364 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:42 Download gff for BO06083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 251527..251801 365..639 100 <- Minus
arm_2L 251856..251924 296..364 100 <- Minus
arm_2L 251193..251464 640..909 99 <- Minus
arm_2L 251979..252166 108..295 100 <- Minus
arm_2L 252227..252317 17..107 100   Minus

BO06083.pep Sequence

Translation from 16 to 925

> BO06083.pep
MEQTRPFYDFSIPYNKDDSVLRALLNELVETGYKTVAIDQSFDHSKKDPG
KRGSEMFPEPHKIEHLRKEFQDKLRILQRITILYVDVNVAHAMSVSHNLR
KFNLIAGQPKTDAALTHCCTAFNGDLITFDPVAGSRLLVNRKAYQVAVRR
GMFFEIKYAPSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAHEFQLR
GPYDVANLAFIFGLSEDQGKNAVDGHCRELFLKAEARRLGKTIMFLKGNG
PIIYSDSSEDEKSTEDEMKGLKPQIGKADAFEVKDGTEHAIKRLKVAASF
LDH

BO06083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rpp30-PB 297 CG11606-PB 1..297 1..297 1543 100 Plus
Rpp30-PA 297 CG11606-PA 1..297 1..297 1543 100 Plus