Clone Sequence Records
BO06083.3prime Sequence
923 bp (782 high quality bases) assembled on 2005-12-02
> BO06083.3prime
ATGGTCTAGAAAGCTTGCCGCCACTTTAAGTCGTTTAATAGCGTGCTCAG
TTCCGTCTTTGACTTCAAATGCATCCGCTTTTCCAATTTGCGGTTTTAGA
CCCTTCATTTCGTCTTCGGTGCTTTTCTCGTCCTCAGAGCTATCCGAGTA
TATTATGGGACCGTTTCCTTTGAGAAACATGATGGTTTTTCCCAGACGAC
GCGCCTCAGCCTTCAGGAAAAGTTCCCGGCAGTGCCCGTCCACAGCATTT
TTCCCTTGGTCCTCTGATAGGCCGAAGATAAAGGCCAAATTAGCAACGTC
GTAAGGTCCTCTCAGCTGGAATTCGTGCGCCGCACCACTGCTGAAGATAA
CGTTCTTGGACTTCCCTTTGGTGCAATAGTTCTGGGCGATCTTTATCATG
TCCTTCCTGTTATTCGAATCGCAGATAGATGGAGCGTATTTAATTTCGAA
GAACATGCCCCGACGGACTGCCACCTGGTATGCTTTTCGGTTTACCAAGA
GTCGGGACCCAGCCACAGGATCAAAAGTTATCAAGTCCCCATTGAAGGCA
GTGCAGCAGTGCGTCAGGGCGGCATCTGTTTTCGGTTGGCCAGCGATGAG
ATTGAACTTCCGCAGATTATGGGAGACACTCATCGCGTGGGCCACATTGA
CGTCTACGTAGAGAATGGTGATTCTCTGCAGGATTCTCAGCTTGTCCTGG
AACTCCTTGCGCAGATGCTCGATCTTATGAGGCTCGGGAAACATCTCGGA
CCCACGTTTGCCCGGATCCTTTTTGCTGTGGTCGAAACTCTGGTCGATGG
CCACTGTTTTGTAGCCCGTTTCCACCAGCTCGTTAAGCAGGGCCCGCAAC
ACGGAGTCGTCCTTGTTGTATGGTATGCTGAAATCGAAAAATGGGCTTGT
TTGCTCCATGTCGACTGATAACT
BO06083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11606-PA | 894 | Rpp30-RA | 1..891 | 909..19 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp30-RB | 1105 | CG11606-RB | 57..947 | 909..19 | 4425 | 99.8 | Minus |
Rpp30-RA | 981 | CG11606-RA | 57..947 | 909..19 | 4425 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 251526..251802 | 286..562 | 1385 | 100 | Plus |
2L | 23513712 | 2L | 251197..251464 | 19..286 | 1340 | 100 | Plus |
2L | 23513712 | 2L | 251979..252166 | 631..818 | 940 | 100 | Plus |
2L | 23513712 | 2L | 252227..252317 | 819..909 | 425 | 97.8 | Plus |
2L | 23513712 | 2L | 251856..251925 | 562..631 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:14:18 has no hits.
BO06083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:33 Download gff for
BO06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-PA | 1..894 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:21 Download gff for
BO06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11606-PA | 1..894 | 18..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:15 Download gff for
BO06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 57..954 | 10..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:52 Download gff for
BO06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 57..954 | 10..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:52 Download gff for
BO06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 252227..252317 | 819..909 | 97 | | Plus |
2L | 251189..251464 | 10..286 | 98 | <- | Plus |
2L | 251527..251801 | 287..561 | 100 | <- | Plus |
2L | 251856..251924 | 562..630 | 100 | <- | Plus |
2L | 251979..252166 | 631..818 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:15 Download gff for
BO06083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 251189..251464 | 10..286 | 98 | <- | Plus |
arm_2L | 251527..251801 | 287..561 | 100 | <- | Plus |
arm_2L | 251856..251924 | 562..630 | 100 | <- | Plus |
arm_2L | 251979..252166 | 631..818 | 100 | <- | Plus |
arm_2L | 252227..252317 | 819..909 | 97 | | Plus |
BO06083.5prime Sequence
902 bp (752 high quality bases) assembled on 2005-12-02
> BO06083.5prime
GAAGTTATCAGTCGACATGGAGCAAACAAGGCCATTTTACGATTTCAGCA
TACCATACAACAAGGACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTG
GTGGAAACGGGCTACAAAACAGTGGCCATCGACCAGAGTTTCGACCACAG
CAAAAAGGATCCGGGCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATA
AGATCGAGCATCTGCGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAG
AGAATCACCATTCTCTACGTAGACGTCAATGTGGCCCACGCGATGAGTGT
CTCCCATAATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAG
ATGCCGCCCTGACGCACTGCTGCACTGCCTTCAATGGGGACTTGATAACT
TTTGATCCTGTGGCTGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCA
GGTGGCAGTCCGTCGGGGCATGTTCTTCGAAATTAAATACGCTCCATCTA
TCTGCGATTCGAATAACAGGAAGGACATGATAAAGATCGCCCAGAACTAT
TGCACCAAAGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCA
CGAATTCCAGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCT
TCGGCCTATCAGAGGACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGG
GAACTTTTCCTGAAGGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTT
TCTCAAAGGAAACGGTCCCATAATATACTCGGATAGCTCTGAGGACGAGA
AAAGCACCGAAGACGAAATGAANGGTCTAAAACCGCAAATTGGAAAAGCG
GATGCATTTGAAGTCAAAGACGGAACTGAGCACGCTATTAAACGACTTAA
AG
BO06083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11606-PA | 894 | Rpp30-RA | 1..886 | 17..902 | 4411 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp30-RB | 1105 | CG11606-RB | 57..942 | 17..902 | 4419 | 99.9 | Plus |
Rpp30-RA | 981 | CG11606-RA | 57..942 | 17..902 | 4419 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 251526..251802 | 640..364 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 251202..251464 | 902..640 | 1304 | 99.6 | Minus |
2L | 23513712 | 2L | 251979..252166 | 295..108 | 940 | 100 | Minus |
2L | 23513712 | 2L | 252227..252317 | 107..17 | 455 | 100 | Minus |
2L | 23513712 | 2L | 251856..251925 | 364..295 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:02:22 has no hits.
BO06083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:34 Download gff for
BO06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:23 Download gff for
BO06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11606-PA | 1..886 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:43 Download gff for
BO06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 57..942 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:11:51 Download gff for
BO06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 57..942 | 17..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:11:51 Download gff for
BO06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 251202..251464 | 640..902 | 99 | <- | Minus |
2L | 251527..251801 | 365..639 | 100 | <- | Minus |
2L | 251856..251924 | 296..364 | 100 | <- | Minus |
2L | 251979..252166 | 108..295 | 100 | <- | Minus |
2L | 252227..252317 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:43 Download gff for
BO06083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 251202..251464 | 640..902 | 99 | <- | Minus |
arm_2L | 251527..251801 | 365..639 | 100 | <- | Minus |
arm_2L | 251856..251924 | 296..364 | 100 | <- | Minus |
arm_2L | 251979..252166 | 108..295 | 100 | <- | Minus |
arm_2L | 252227..252317 | 17..107 | 100 | | Minus |
BO06083.complete Sequence
925 bp (925 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630282
> BO06083.complete
GAAGTTATCAGTCGACATGGAGCAAACAAGGCCATTTTACGATTTCAGCA
TACCATACAACAAGGACGACTCCGTGTTGCGGGCCCTGCTTAACGAGCTG
GTGGAAACGGGCTACAAAACAGTGGCCATCGACCAGAGTTTCGACCACAG
CAAAAAGGATCCGGGCAAACGTGGGTCCGAGATGTTTCCCGAGCCTCATA
AGATCGAGCATCTGCGCAAGGAGTTCCAGGACAAGCTGAGAATCCTGCAG
AGAATCACCATTCTCTACGTAGACGTCAATGTGGCCCACGCGATGAGTGT
CTCCCATAATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAG
ATGCCGCCCTGACGCACTGCTGCACTGCCTTCAATGGGGACTTGATAACT
TTTGATCCTGTGGCTGGGTCCCGACTCTTGGTAAACCGAAAAGCATACCA
GGTGGCAGTCCGTCGGGGCATGTTCTTCGAAATTAAATACGCTCCATCTA
TCTGCGATTCGAATAACAGGAAGGACATGATAAAGATCGCCCAGAACTAT
TGCACCAAAGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCA
CGAATTCCAGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCT
TCGGCCTATCAGAGGACCAAGGGAAAAATGCTGTGGACGGGCACTGCCGG
GAACTTTTCCTGAAGGCTGAGGCGCGTCGTCTGGGAAAAACCATCATGTT
TCTCAAAGGAAACGGTCCCATAATATACTCGGATAGCTCTGAGGACGAGA
AAAGCACCGAAGACGAAATGAAGGGTCTAAAACCGCAAATTGGAAAAGCG
GATGCATTTGAAGTCAAAGACGGAACTGAGCACGCTATTAAACGACTTAA
AGTGGCGGCAAGCTTTCTAGACCAT
BO06083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp30-RB | 894 | CG11606-PB | 1..891 | 17..907 | 4455 | 100 | Plus |
Rpp30-RA | 894 | CG11606-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp30-RB | 1105 | CG11606-RB | 57..947 | 17..907 | 4455 | 100 | Plus |
Rpp30-RA | 981 | CG11606-RA | 57..947 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 251526..251802 | 640..364 | 1385 | 100 | Minus |
2L | 23513712 | 2L | 251197..251464 | 907..640 | 1340 | 100 | Minus |
2L | 23513712 | 2L | 251979..252166 | 295..108 | 940 | 100 | Minus |
2L | 23513712 | 2L | 252227..252317 | 107..17 | 455 | 100 | Minus |
2L | 23513712 | 2L | 251856..251925 | 364..295 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:44:56 has no hits.
BO06083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:02 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 1..894 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:21 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 15..912 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:42 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 57..947 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:02 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 15..912 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:29:50 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpp30-RA | 57..947 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:29:50 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 251979..252166 | 108..295 | 100 | <- | Minus |
2L | 252227..252317 | 17..107 | 100 | | Minus |
2L | 251193..251464 | 640..909 | 99 | <- | Minus |
2L | 251527..251801 | 365..639 | 100 | <- | Minus |
2L | 251856..251924 | 296..364 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:42 Download gff for
BO06083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 251527..251801 | 365..639 | 100 | <- | Minus |
arm_2L | 251856..251924 | 296..364 | 100 | <- | Minus |
arm_2L | 251193..251464 | 640..909 | 99 | <- | Minus |
arm_2L | 251979..252166 | 108..295 | 100 | <- | Minus |
arm_2L | 252227..252317 | 17..107 | 100 | | Minus |
BO06083.pep Sequence
Translation from 16 to 925
> BO06083.pep
MEQTRPFYDFSIPYNKDDSVLRALLNELVETGYKTVAIDQSFDHSKKDPG
KRGSEMFPEPHKIEHLRKEFQDKLRILQRITILYVDVNVAHAMSVSHNLR
KFNLIAGQPKTDAALTHCCTAFNGDLITFDPVAGSRLLVNRKAYQVAVRR
GMFFEIKYAPSICDSNNRKDMIKIAQNYCTKGKSKNVIFSSGAAHEFQLR
GPYDVANLAFIFGLSEDQGKNAVDGHCRELFLKAEARRLGKTIMFLKGNG
PIIYSDSSEDEKSTEDEMKGLKPQIGKADAFEVKDGTEHAIKRLKVAASF
LDH
BO06083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpp30-PB | 297 | CG11606-PB | 1..297 | 1..297 | 1543 | 100 | Plus |
Rpp30-PA | 297 | CG11606-PA | 1..297 | 1..297 | 1543 | 100 | Plus |