Clone Sequence Records
BO06086.3prime Sequence
879 bp (798 high quality bases) assembled on 2005-12-02
> BO06086.3prime
ATGGTCTAGAAAGCTTGCAACGCTGAACTTCTCCTTCTTCATCAGGTCGT
ACACCACGGAGAAGTCCTTGTTGCCCAGACCCTTATCGCACAGCGACTGG
TAGACCTTGTGCGCCAGAGATCCCAGCGGGATGGGTGAGTTGGAAGCGTT
GGCCACTCCGGAGGCCAGACCCAGATCCTTGGTGATCAGAGCCGAGGAGA
AACCGCCGGCGTAGTCCCTGTTGGCTGGGGCACTGGGGCAGACTCCGGGC
ACAGGGTTGTAGATCTCCGAGGCCCAGCAGCGTCCGGTGGAGGAGTTGAT
GATCTCGGCGAAGACATTGGCATCGAGACCCTGGCGCACCGCCAGATTCA
TGGCCTCCGAAACACCGATCATCGAGATGGCCAGCATCATGTTGTTGCAC
AGCTTGGCGGCCTGGCCCATGCCATAGACGCCGCAGTGGGTGATCTTCTT
GCCCATGCACTCTAGGACGGCCTTGACGGCATTGTACTCCGCCTCGGTGC
CGCCCACCATGAAGGTGAGGGTGGCCTGCTCGGCGCCGGGAACTCCGCCG
GAAACGGGGGCATCGATAAACCGAGCTCCCTTGGCGCTGATCTTCTTCTG
CAACGACTTGACCAAATCCGGCGAGATCGTCGACGAGTCAATGAAGATGG
TGTCCTTGTTGACGCCATCGGCAGTCATCTCATCGTAGGAGGCATCCACA
ATGGCATTGTTCGGCAGCATGGTGATCACAAAGTCCGAGTTCTTGGCCAG
CTCCGAGGTCTTGGCGTAGACGGTGGCTCCCTTGGCGGCCAGACCATCGC
AGGCGGGCTTGGAGATATCGAAGACATGCAGCTTGTGGCCGGCCTTGATT
AGATTGCTGGCCATGTTGGCACCCATGTT
BO06086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-PB | 975 | CG15093-RB | 112..972 | 879..19 | 4305 | 100 | Minus |
| CG15093-PA | 975 | CG15093-RA | 112..972 | 879..19 | 4305 | 100 | Minus |
| CG15093-PC | 684 | CG15093-RC | 284..684 | 483..83 | 2005 | 100 | Minus |
| CG15093-PC | 684 | CG15093-RC | 112..284 | 879..707 | 865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 1255 | CG15093-RE | 211..1071 | 879..19 | 4305 | 100 | Minus |
| CG15093-RA | 1310 | CG15093-RA | 266..1126 | 879..19 | 4305 | 100 | Minus |
| CG15093-RB | 1243 | CG15093-RB | 199..1059 | 879..19 | 4305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18775853..18776713 | 19..879 | 4305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:18 has no hits.
BO06086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:37 Download gff for
BO06086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PB | 112..975 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:28 Download gff for
BO06086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PA | 112..975 | 18..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:21 Download gff for
BO06086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 199..1065 | 11..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:02 Download gff for
BO06086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 199..1065 | 11..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:02 Download gff for
BO06086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18775850..18776713 | 18..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:21 Download gff for
BO06086.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14663355..14664218 | 18..879 | 99 | | Plus |
BO06086.5prime Sequence
824 bp (787 high quality bases) assembled on 2005-12-02
> BO06086.5prime
GAAGTTATCAGTCGACATGTCGCTCCGTGTGATGTCCCCCGCTATGCTGA
ATGCCTGGAGCCAGACCCTCGTGAGGGCCATGTCCACCCAGGGCGGAGCC
AAGAACATCGGCTTCGTGGGTCTGGGCAACATGGGTGCCAACATGGCCAG
CAATCTAATCAAGGCCGGCCACAAGCTGCATGTCTTCGATATCTCCAAGC
CCGCCTGCGATGGTCTGGCCGCCAAGGGAGCCACCGTCTACGCCAAGACC
TCGGAGCTGGCCAAGAACTCGGACTTTGTGATCACCATGCTGCCGAACAA
TGCCATTGTGGATGCCTCCTACGATGAGATGACTGCCGATGGCGTCAACA
AGGACACCATCTTCATTGACTCGTCGACGATCTCGCCGGATTTGGTCAAG
TCGTTGCAGAAGAAGATCAGCGCCAAGGGAGCTCGGTTTATCGATGCCCC
CGTTTCCGGCGGAGTTCCCGGCGCCGAGCAGGCCACCCTCACCTTCATGG
TGGGCGGCACCGAGGCGGAGTACAATGCCGTCAAGGCCGTCCTAGAGTGC
ATGGGCAAGAAGATCACCCACTGCGGCGTCTATGGCATGGGCCAGGCCGC
CAAGCTGTGCAACAACATGATGCTGGCCATCTCGATGATCGGTGTTTCGG
AGGCCATGAATCTGGCGGTGCGCCAGGGTCTCGATGCCAATGTCTTCGCC
GAGATCATCAACTCCTCCACCGGACGCTGCTGGGCCTCGGAGATCTACAA
CCCTGTGCCCGGAGTCTGCCCCAGTGCCCCAGCCAACAGGGACTACGCCG
GCGGTTTCTCCTCGGCTCTGATCA
BO06086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-PB | 975 | CG15093-RB | 1..808 | 17..824 | 4040 | 100 | Plus |
| CG15093-PA | 975 | CG15093-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
| CG15093-PC | 684 | CG15093-RC | 284..584 | 524..824 | 1505 | 100 | Plus |
| CG15093-PC | 684 | CG15093-RC | 1..284 | 17..300 | 1420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 1255 | CG15093-RE | 97..907 | 14..824 | 4055 | 100 | Plus |
| CG15093-RA | 1310 | CG15093-RA | 152..962 | 14..824 | 4055 | 100 | Plus |
| CG15093-RB | 1243 | CG15093-RB | 85..895 | 14..824 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18776017..18776827 | 824..14 | 4055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:58:23 has no hits.
BO06086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:38 Download gff for
BO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PB | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:29 Download gff for
BO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:23 Download gff for
BO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 80..894 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:13 Download gff for
BO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 80..894 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:13 Download gff for
BO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18776018..18776834 | 5..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:23 Download gff for
BO06086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14663523..14664339 | 5..823 | 99 | | Minus |
BO06086.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630283
> BO06086.complete
GAAGTTATCAGTCGACATGTCGCTCCGTGTGATGTCCCCCGCTATGCTGA
ATGCCTGGAGCCAGACCCTCGTGAGGGCCATGTCCACCCAGGGCGGAGCC
AAGAACATCGGCTTCGTGGGTCTGGGCAACATGGGTGCCAACATGGCCAG
CAATCTAATCAAGGCCGGCCACAAGCTGCATGTCTTCGATATCTCCAAGC
CCGCCTGCGATGGTCTGGCCGCCAAGGGAGCCACCGTCTACGCCAAGACC
TCGGAGCTGGCCAAGAACTCGGACTTTGTGATCACCATGCTGCCGAACAA
TGCCATTGTGGATGCCTCCTACGATGAGATGACTGCCGATGGCGTCAACA
AGGACACCATCTTCATTGACTCGTCGACGATCTCGCCGGATTTGGTCAAG
TCGTTGCAGAAGAAGATCAGCGCCAAGGGAGCTCGGTTTATCGATGCCCC
CGTTTCCGGCGGAGTTCCCGGCGCCGAGCAGGCCACCCTCACCTTCATGG
TGGGCGGCACCGAGGCGGAGTACAATGCCGTCAAGGCCGTCCTAGAGTGC
ATGGGCAAGAAGATCACCCACTGCGGCGTCTATGGCATGGGCCAGGCCGC
CAAGCTGTGCAACAACATGATGCTGGCCATCTCGATGATCGGTGTTTCGG
AGGCCATGAATCTGGCGGTGCGCCAGGGTCTCGATGCCAATGTCTTCGCC
GAGATCATCAACTCCTCCACCGGACGCTGCTGGGCCTCGGAGATCTACAA
CCCTGTGCCCGGAGTCTGCCCCAGTGCCCCAGCCAACAGGGACTACGCCG
GCGGTTTCTCCTCGGCTCTGATCACCAAGGATCTGGGTCTGGCCTCCGGA
GTGGCCAACGCTTCCAACTCACCCATCCCGCTGGGATCTCTGGCGCACAA
GGTCTACCAGTCGCTGTGCGATAAGGGTCTGGGCAACAAGGACTTCTCCG
TGGTGTACGACCTGATGAAGAAGGAGAAGTTCAGCGTTGCAAGCTTTCTA
GACCAT
BO06086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 975 | CG15093-PE | 1..972 | 17..988 | 4860 | 100 | Plus |
| CG15093-RA | 975 | CG15093-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
| CG15093-RB | 975 | CG15093-PB | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-RE | 1255 | CG15093-RE | 97..1071 | 14..988 | 4875 | 100 | Plus |
| CG15093-RA | 1310 | CG15093-RA | 152..1126 | 14..988 | 4875 | 100 | Plus |
| CG15093-RB | 1243 | CG15093-RB | 85..1059 | 14..988 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18775853..18776827 | 988..14 | 4875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:05:51 has no hits.
BO06086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:27:03 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RA | 1..975 | 17..989 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:22 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RA | 123..1111 | 5..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:30 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 88..1059 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:27:03 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RA | 123..1111 | 5..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:13 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15093-RB | 88..1059 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:13 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18775851..18776824 | 17..990 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:30 Download gff for
BO06086.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14663356..14664329 | 17..990 | 99 | | Minus |
BO06086.pep Sequence
Translation from 16 to 1006
> BO06086.pep
MSLRVMSPAMLNAWSQTLVRAMSTQGGAKNIGFVGLGNMGANMASNLIKA
GHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAIVDA
SYDEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGV
PGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNN
MMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGV
CPSAPANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSL
CDKGLGNKDFSVVYDLMKKEKFSVASFLDH
BO06086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15093-PE | 324 | CG15093-PE | 1..324 | 1..324 | 1651 | 100 | Plus |
| CG15093-PA | 324 | CG15093-PA | 1..324 | 1..324 | 1651 | 100 | Plus |
| CG15093-PB | 324 | CG15093-PB | 1..324 | 1..324 | 1651 | 100 | Plus |
| CG4747-PC | 602 | CG4747-PC | 316..597 | 29..314 | 199 | 22.1 | Plus |
| CG4747-PA | 602 | CG4747-PA | 316..597 | 29..314 | 199 | 22.1 | Plus |
