Clone Sequence Records
BO06088.3prime Sequence
767 bp (766 high quality bases) assembled on 2005-12-02
> BO06088.3prime
ATGGTCTAGAAAGCTTGCGTTGGCCTTCTTCTGGGGTGAGCCGCTGGATC
CACCGCCCAGGATCTTACGGCGCTGGGCGAACATGTGCAAGTACAACTGC
GGGAAGATGGGGATGTAGCCGAGCATGACGATCCACAGGAATCCAAAATA
CGAGAAGGTGGCGTTCCACTTGTTGGGCATCACCACACTCCACACGCTGT
TCTCACGGGCATAGCTCTGGGCCCACCAGAAGCACAGCAGCTCCCCAGTC
ACGCCGATGGGATACAGGACAATGAATGTGGTGTAGCGCAGGAACACCAC
AAAATGCGGCACCACCTTGACGATGTTCAGAGCGTAATATCCATATCGGA
TGATCTCAGTGATGGCCCAGGCCAGCAGGGCGATGGGCAGACCGGGTGAA
ACCTTTCCAGTAGGCGTGGCCATCACCACGCCGACGACCACCATCATGCG
GCTGAACACCTGGAAGCCAGTGACCACCGGGTTCGACTTGACCAATCCAA
AAGAAGCATTGAGTATCTCCACGAACGCGGCATTCTGGAAGATGATCACG
GCCAGCCGAGTATACTCCCACAACGTCACCTGGGCACGGAACTCCGGACC
CTGCAATATGTAGTAGTTGACCAGCTGCCACAGGATGTAGCTCCATCCGA
CCACCTGGCCGGCGTTGTACGCAAACAGGTACAATTTAGTGACCGCCGAC
GGCTCCTTGGAAGCGCCTGGTTTGCTGGACTTGGACACTGCCTTTGCTGA
CATGTCGACTGATAACT
BO06088.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-PA | 738 | CG6746-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 1033 | CG6746-RA | 114..850 | 755..19 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12001417..12002153 | 19..755 | 3685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:27 has no hits.
BO06088.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:41 Download gff for
BO06088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 16..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:34 Download gff for
BO06088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 16..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:24 Download gff for
BO06088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 11..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:27 Download gff for
BO06088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 11..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:27 Download gff for
BO06088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12001409..12002157 | 11..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:24 Download gff for
BO06088.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12001409..12002157 | 11..762 | 99 | | Plus |
BO06088.5prime Sequence
767 bp (737 high quality bases) assembled on 2005-12-02
> BO06088.5prime
GAAGTTATCAGTCGACATGTCAGCAAAGGCAGTGTCCAAGTCCAGCAAAC
CAGGCGCTTCCAAGGAGCCGTCGGCGGTCACTAAATTGTACCTGTTTGCG
TACAACGCCGGCCAGGTGGTCGGATGGAGCTACATCCTGTGGCAGCTGGT
CAACTACTACATATTGCAGGGTCCGGAGTTCCGTGCCCAGGTGACGTTGT
GGGAGTATACTCGGCTGGCCGTGATCATCTTCCAGAATGCCGCGTTCGTG
GAGATACTCAATGCTTCTTTTGGATTGGTCAAGTCGAACCCGGTGGTCAC
TGGCTTCCAGGTGTTCAGCCGCATGATGGTGGTCGTCGGCGTGGTGATGG
CCACGCCTACTGGAAAGGTTTCACCCGGTCTGCCCATCGCCCTGCTGGCC
TGGGCCATCACTGAGATCATCCGATATGGATATTACGCTCTGAACATCGT
CAAGGTGGTGCCGCATTTTGTGGTGTTCCTGCGCTACACCACATTCATTG
TCCTGTATCCCATCGGCGTGACTGGGGAGCTGCTGTGCTTCTGGTGGGCC
CAGAGCTATGCCCGTGAGAACAGCGTGTGGAGTGTGGTGATGCCCAACAA
GTGGAACGCCACCTTCTCGTATTTTGGATTCCTGTGGATCGTCATGCTCG
GCTACATCCCCATCTTCCCGCAGTTGTACTTGCACATGTTCGCCCAGCGC
CGTAAGATCCTGGGCGGTGGATCCAGCGGCTCACCCCAGAAGAAGGCCAA
CGCAAGCTTTCTAGACC
BO06088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-PA | 738 | CG6746-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 1033 | CG6746-RA | 114..850 | 15..751 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12001417..12002153 | 751..15 | 3685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:58:32 has no hits.
BO06088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:43 Download gff for
BO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:35 Download gff for
BO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:25 Download gff for
BO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 8..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:40 Download gff for
BO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 105..858 | 8..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:40 Download gff for
BO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12001409..12002157 | 8..759 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:25 Download gff for
BO06088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12001409..12002157 | 8..759 | 99 | | Minus |
BO06088.complete Sequence
769 bp (769 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ638634
> BO06088.complete
GAAGTTATCAGTCGACATGTCAGCAAAGGCAGTGTCCAAGTCCAGCAAAC
CAGGCGCTTCCAAGGAGCCGTCGGCGGTCACTAAATTGTACCTGTTTGCG
TACAACGCCGGCCAGGTGGTCGGATGGAGCTACATCCTGTGGCAGCTGGT
CAACTACTACATATTGCAGGGTCCGGAGTTCCGTGCCCAGGTGACGTTGT
GGGAGTATACTCGGCTGGCCGTGATCATCTTCCAGAATGCCGCGTTCGTG
GAGATACTCAATGCTTCTTTTGGATTGGTCAAGTCGAACCCGGTGGTCAC
TGGCTTCCAGGTGTTCAGCCGCATGATGGTGGTCGTCGGCGTGGTGATGG
CCACGCCTACTGGAAAGGTTTCACCCGGTCTGCCCATCGCCCTGCTGGCC
TGGGCCATCACTGAGATCATCCGATATGGATATTACGCTCTGAACATCGT
CAAGGTGGTGCCGCATTTTGTGGTGTTCCTGCGCTACACCACATTCATTG
TCCTGTATCCCATCGGCGTGACTGGGGAGCTGCTGTGCTTCTGGTGGGCC
CAGAGCTATGCCCGTGAGAACAGCGTGTGGAGTGTGGTGATGCCCAACAA
GTGGAACGCCACCTTCTCGTATTTTGGATTCCTGTGGATCGTCATGCTCG
GCTACATCCCCATCTTCCCGCAGTTGTACTTGCACATGTTCGCCCAGCGC
CGTAAGATCCTGGGCGGTGGATCCAGCGGCTCACCCCAGAAGAAGGCCAA
CGCAAGCTTTCTAGACCAT
BO06088.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 738 | CG6746-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-RA | 1033 | CG6746-RA | 114..850 | 15..751 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12001417..12002153 | 751..15 | 3685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:35:29 has no hits.
BO06088.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:47 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:58 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 115..868 | 8..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:33 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 116..850 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:47 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 115..868 | 8..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:54 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6746-RA | 116..850 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:54 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12001414..12002151 | 17..753 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:33 Download gff for
BO06088.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12001414..12002151 | 17..753 | 99 | | Minus |
BO06088.pep Sequence
Translation from 16 to 769
> BO06088.pep
MSAKAVSKSSKPGASKEPSAVTKLYLFAYNAGQVVGWSYILWQLVNYYIL
QGPEFRAQVTLWEYTRLAVIIFQNAAFVEILNASFGLVKSNPVVTGFQVF
SRMMVVVGVVMATPTGKVSPGLPIALLAWAITEIIRYGYYALNIVKVVPH
FVVFLRYTTFIVLYPIGVTGELLCFWWAQSYARENSVWSVVMPNKWNATF
SYFGFLWIVMLGYIPIFPQLYLHMFAQRRKILGGGSSGSPQKKANASFLD
H
BO06088.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6746-PA | 245 | CG6746-PA | 1..245 | 1..245 | 1283 | 100 | Plus |
| CG9267-PA | 371 | CG9267-PA | 149..366 | 23..241 | 241 | 29.7 | Plus |
