Clone BO06089 Report

Search the DGRC for BO06089

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG13920-RA
Protein status:BO06089.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO06089.5prime Sequence

512 bp (511 high quality bases) assembled on 2005-12-02

> BO06089.5prime
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACGCAA
GCTTTCTAGACC

BO06089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-PA 483 CG13920-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 1292 CG13920-RC 442..921 17..496 2400 100 Plus
CG13920-RA 1156 CG13920-RA 306..785 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1650913..1651130 279..496 1090 100 Plus
3L 28110227 3L 1650713..1650857 139..283 710 99.3 Plus
3L 28110227 3L 1649385..1649507 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:58:37 has no hits.

BO06089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:43 Download gff for BO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-PA 1..483 17..497 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:37 Download gff for BO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-PA 1..483 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:27 Download gff for BO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 380..859 17..496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:53 Download gff for BO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 306..785 17..496 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:53 Download gff for BO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1650913..1651130 279..496 100   Plus
3L 1649385..1649507 17..139 100 -> Plus
3L 1650714..1650852 140..278 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:27 Download gff for BO06089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1649385..1649507 17..139 100 -> Plus
arm_3L 1650714..1650852 140..278 100 -> Plus
arm_3L 1650913..1651130 279..496 100   Plus

BO06089.complete Sequence

514 bp (514 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630284

> BO06089.complete
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACGCAA
GCTTTCTAGACCAT

BO06089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 483 CG13920-PC 1..480 17..496 2400 100 Plus
CG13920-RA 483 CG13920-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-RC 1292 CG13920-RC 442..921 17..496 2400 100 Plus
CG13920-RA 1156 CG13920-RA 306..785 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1650913..1651130 279..496 1090 100 Plus
3L 28110227 3L 1650713..1650857 139..283 710 99.3 Plus
3L 28110227 3L 1649385..1649507 17..139 615 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:47:42 has no hits.

BO06089.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:48 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 1..483 17..497 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:59 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 443..922 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:08 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 380..859 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:48 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 443..922 17..496 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:20 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
CG13920-RA 306..785 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:20 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1649385..1649507 17..139 100 -> Plus
3L 1650714..1650852 140..278 100 -> Plus
3L 1650913..1651130 279..498 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:08 Download gff for BO06089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1649385..1649507 17..139 100 -> Plus
arm_3L 1650714..1650852 140..278 100 -> Plus
arm_3L 1650913..1651130 279..498 99   Plus

BO06089.pep Sequence

Translation from 16 to 514

> BO06089.pep
MPPASNTIVLKSLSVLLGLFFIFVGTLKLTPHISKDLYKDLRTEYVKYAK
VFPLTALFGVKIPSKWYRRTVGILEIVCGLAMALIPYHKVKNTANVTLLV
LMLLGIYQHWMVSDPFERSGPALVFTFMLGGRLVVWYQTARLQDEATTAA
QPAANGVKQDASFLDH

BO06089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13920-PC 160 CG13920-PC 1..160 1..160 823 100 Plus
CG13920-PA 160 CG13920-PA 1..160 1..160 823 100 Plus