Clone Sequence Records
BO06089.5prime Sequence
512 bp (511 high quality bases) assembled on 2005-12-02
> BO06089.5prime
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACGCAA
GCTTTCTAGACC
BO06089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-PA | 483 | CG13920-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 1292 | CG13920-RC | 442..921 | 17..496 | 2400 | 100 | Plus |
CG13920-RA | 1156 | CG13920-RA | 306..785 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1650913..1651130 | 279..496 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 1650713..1650857 | 139..283 | 710 | 99.3 | Plus |
3L | 28110227 | 3L | 1649385..1649507 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:37 has no hits.
BO06089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:43 Download gff for
BO06089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:37 Download gff for
BO06089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-PA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:27 Download gff for
BO06089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 380..859 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:53 Download gff for
BO06089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 306..785 | 17..496 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:53 Download gff for
BO06089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1650913..1651130 | 279..496 | 100 | | Plus |
3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:27 Download gff for
BO06089.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
arm_3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
arm_3L | 1650913..1651130 | 279..496 | 100 | | Plus |
BO06089.complete Sequence
514 bp (514 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630284
> BO06089.complete
GAAGTTATCAGTCGACATGCCTCCTGCATCCAATACGATCGTGCTGAAGA
GCCTCTCCGTGCTGCTGGGCCTCTTCTTCATCTTCGTGGGCACCCTCAAG
CTGACGCCGCACATTAGCAAGGATCTCTACAAGGACCTGCGCACAGAGTA
CGTGAAGTATGCCAAAGTGTTCCCACTAACGGCGCTCTTCGGAGTGAAGA
TACCCTCGAAATGGTACCGCCGCACCGTTGGCATCCTGGAGATCGTCTGC
GGCCTGGCCATGGCGCTGATTCCCTATCATAAGGTCAAAAACACGGCCAA
CGTTACGCTGCTGGTGTTGATGCTCCTGGGCATCTACCAGCACTGGATGG
TCAGTGATCCGTTCGAGCGCTCCGGTCCGGCGCTGGTCTTCACCTTCATG
CTGGGCGGACGCCTGGTGGTCTGGTACCAGACCGCCCGCCTCCAGGACGA
GGCCACGACGGCAGCGCAGCCTGCTGCGAACGGCGTAAAGCAGGACGCAA
GCTTTCTAGACCAT
BO06089.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 483 | CG13920-PC | 1..480 | 17..496 | 2400 | 100 | Plus |
CG13920-RA | 483 | CG13920-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-RC | 1292 | CG13920-RC | 442..921 | 17..496 | 2400 | 100 | Plus |
CG13920-RA | 1156 | CG13920-RA | 306..785 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1650913..1651130 | 279..496 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 1650713..1650857 | 139..283 | 710 | 99.3 | Plus |
3L | 28110227 | 3L | 1649385..1649507 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:47:42 has no hits.
BO06089.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:48 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 1..483 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:59 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 443..922 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:08 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 380..859 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:48 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 443..922 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:20 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13920-RA | 306..785 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:20 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
3L | 1650913..1651130 | 279..498 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:08 Download gff for
BO06089.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1649385..1649507 | 17..139 | 100 | -> | Plus |
arm_3L | 1650714..1650852 | 140..278 | 100 | -> | Plus |
arm_3L | 1650913..1651130 | 279..498 | 99 | | Plus |
BO06089.pep Sequence
Translation from 16 to 514
> BO06089.pep
MPPASNTIVLKSLSVLLGLFFIFVGTLKLTPHISKDLYKDLRTEYVKYAK
VFPLTALFGVKIPSKWYRRTVGILEIVCGLAMALIPYHKVKNTANVTLLV
LMLLGIYQHWMVSDPFERSGPALVFTFMLGGRLVVWYQTARLQDEATTAA
QPAANGVKQDASFLDH
BO06089.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13920-PC | 160 | CG13920-PC | 1..160 | 1..160 | 823 | 100 | Plus |
CG13920-PA | 160 | CG13920-PA | 1..160 | 1..160 | 823 | 100 | Plus |