Clone Sequence Records
BO06090.3prime Sequence
857 bp (740 high quality bases) assembled on 2005-12-02
> BO06090.3prime
ATGGTCTAGAAAGCTTGCAACGGCCAATGCATCGTTTTGGGACTCGTGGC
TGAGTTGCGTCTGCAGGTTTGACAGCTTGTTCTTCAGCACCTGCACACCC
ATGACCACAATGTTCTCAGGCTTAAGGGCACCGGCGGATTCGACGTTGAA
GAAGAACTTGTTTGGCTTGGCTTCCCAGTTGTAGGGCGCCTCGTACTGGT
CGTCCTCCAGTTCGGTGTGCTCGCTCTTTGGCCACTCATCAGGTTTGGGA
TACAGAGTGTGTCGCATGGAGTTGTCCGGATCATACTCGAAGCACACGCC
TGCGGTAGGATTCCACTTGGCGTGCTCCTTGCCAAATCCCTTCTTGGCGT
AGGCGCGCAGCTTCAGCTCCTGCCCCTTGCGCAGCTTAATTATGAGGATC
TCATCGTTGCTCTCGCCGTACTCGTTGTCCTCCTCACCCTGGTTGCGGGA
CGTCACCGGCAGGACCTTGGCATTGCTCGACTTGAGATCGGCGGTGGTCA
CGTGGCGCGTCTGTTCCTCGCTGCACTTTACGTCCAGGGTGAACTCCACG
CTGCATTCGGGGCAGAAGTCCAGGCAGATACAGTCACGCGTGTACTGCAG
CCGCTCCACGACGTCGTCGGAGATCAGCGGTATCAGACCGATCCGGTGGG
CTAAAAACTCATCCGAGAGCACCGTAGAGTTGGCTTCCAGTTGCACCCAG
TCGATGGCCAGCGTCGGCGTCTCCGCGATGAACACTCGCCGCAAGCTGTT
GGCCACACTCAGTTCCGTGTCCTCCAGGACGAACTTTACGTTGTCGTCCG
TCAGCTCGGTTATCTGCACGGACGGCTGGTTGGCGTACGGCATGTCGACT
GATAACT
BO06090.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7885-PA | 828 | RpII33-RA | 1..825 | 843..19 | 4100 | 99.8 | Minus |
| CG7885-PB | 354 | RpII33-RB | 1..262 | 843..582 | 1285 | 99.6 | Minus |
| CG7885-PB | 354 | RpII33-RB | 263..354 | 525..434 | 460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 970 | CG7885-RA | 88..912 | 843..19 | 4110 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13833424..13834248 | 843..19 | 4110 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:55:38 has no hits.
BO06090.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:45 Download gff for
BO06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 1..828 | 16..843 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:38 Download gff for
BO06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 1..828 | 16..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:51:50 Download gff for
BO06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..912 | 19..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:24:44 Download gff for
BO06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..912 | 19..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:24:44 Download gff for
BO06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13833424..13834245 | 22..843 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:51:50 Download gff for
BO06090.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13833424..13834245 | 22..843 | 99 | -> | Minus |
BO06090.5prime Sequence
857 bp (809 high quality bases) assembled on 2005-12-02
> BO06090.5prime
GAAGTTATCAGTCGACATGCCGTACGCCAACCAGCCGTCCGTGCAGATAA
CCGAGCTGACGGACGACAACGTAAAGTTCGTCCTGGAGGACACGGAACTG
AGTGTGGCCAACAGCCTGCGGCGAGTGTTCATCGCGGAGACGCCGACGCT
GGCCATCGACTGGGTGCAACTGGAAGCCAACTCTACGGTGCTCTCGGATG
AGTTTTTAGCCCACCGGATCGGTCTGATACCGCTGATCTCCGACGACGTC
GTGGAGCGGCTGCAGTACACGCGTGACTGTATCTGCCTGGACTTCTGCCC
CGAATGCAGCGTGGAGTTCACCCTGGACGTAAAGTGCAGCGAGGAACAGA
CGCGCCACGTGACCACCGCCGATCTCAAGTCGAGCAATGCCAAGGTCCTG
CCGGTGACGTCCCGCAACCAGGGTGAGGAGGACAACGAGTACGGCGAGAG
CAACGATGAGATCCTCATAATTAAGCTGCGCAAGGGGCAGGAGCTGAAGC
TGCGCGCCTACGCCAAGAAGGGATTTGGCAAGGAGCACGCCAAGTGGAAT
CCTACCGCAGGCGTGTGCTTCGAGTATGATCCGGACAACTCCATGCGACA
CACTCTGTATCCCAAACCTGATGAGTGGCCAAAGAGCGAGCACACCGAAC
TGGAGGACGACCAGTACGAGGCGCCCTACAACTGGGAAGCCAAGCCAAAC
AAGTTCTTCTTCAACGTCGAATCCGCCGGTGCCCTTAAGCCTGAGAACAT
TGTGGTCATGGGTGTGCAGGTGCTGAAGAACAAGCTGTCAAACCTGCAGA
CGCAACTCAGCCACGAGTCCCAAAACGATGCATTGGCCGTTGCAAGCTTT
CTAGACC
BO06090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7885-PA | 828 | RpII33-RA | 1..825 | 17..841 | 4125 | 100 | Plus |
| CG7885-PB | 354 | RpII33-RB | 1..262 | 17..278 | 1310 | 100 | Plus |
| CG7885-PB | 354 | RpII33-RB | 263..354 | 335..426 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 970 | CG7885-RA | 88..912 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13833424..13834248 | 17..841 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:26:38 has no hits.
BO06090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:46 Download gff for
BO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:40 Download gff for
BO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7885-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:02 Download gff for
BO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..912 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:25 Download gff for
BO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..912 | 17..841 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:25 Download gff for
BO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13833424..13834245 | 17..838 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:02 Download gff for
BO06090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13833424..13834245 | 17..838 | 100 | -> | Plus |
BO06090.complete Sequence
859 bp (859 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630285
> BO06090.complete
GAAGTTATCAGTCGACATGCCGTACGCCAACCAGCCGTCCGTGCAGATAA
CCGAGCTGACGGACGACAACGTAAAGTTCGTCCTGGAGGACACGGAACTG
AGTGTGGCCAACAGCCTGCGGCGAGTGTTCATCGCGGAGACGCCGACGCT
GGCCATCGACTGGGTGCAACTGGAAGCCAACTCTACGGTGCTCTCGGATG
AGTTTTTAGCCCACCGGATCGGTCTGATACCGCTGATCTCCGACGACGTC
GTGGAGCGGCTGCAGTACACGCGTGACTGTATCTGCCTGGACTTCTGCCC
CGAATGCAGCGTGGAGTTCACCCTGGACGTAAAGTGCAGCGAGGAACAGA
CGCGCCACGTGACCACCGCCGATCTCAAGTCGAGCAATGCCAAGGTCCTG
CCGGTGACGTCCCGCAACCAGGGTGAGGAGGACAACGAGTACGGCGAGAG
CAACGATGAGATCCTCATAATTAAGCTGCGCAAGGGGCAGGAGCTGAAGC
TGCGCGCCTACGCCAAGAAGGGATTTGGCAAGGAGCACGCCAAGTGGAAT
CCTACCGCAGGCGTGTGCTTCGAGTATGATCCGGACAACTCCATGCGACA
CACTCTGTATCCCAAACCTGATGAGTGGCCAAAGAGCGAGCACACCGAAC
TGGAGGACGACCAGTACGAGGCGCCCTACAACTGGGAAGCCAAGCCAAAC
AAGTTCTTCTTCAACGTCGAATCCGCCGGTGCCCTTAAGCCTGAGAACAT
TGTGGTCATGGGTGTGCAGGTGCTGAAGAACAAGCTGTCAAACCTGCAGA
CGCAACTCAGCCACGAGTCCCAAAACGATGCATTGGCCGTTGCAAGCTTT
CTAGACCAT
BO06090.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 828 | CG7885-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-RA | 970 | CG7885-RA | 88..912 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13833424..13834248 | 17..841 | 4125 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:48 has no hits.
BO06090.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:49 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:01 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 86..910 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:14 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..912 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:49 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 86..910 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:38 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII33-RA | 88..912 | 17..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:38 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13833424..13834248 | 17..843 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:14 Download gff for
BO06090.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13833424..13834248 | 17..843 | 99 | | Plus |
BO06090.pep Sequence
Translation from 16 to 859
> BO06090.pep
MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWV
QLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVE
FTLDVKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEIL
IIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPK
PDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGV
QVLKNKLSNLQTQLSHESQNDALAVASFLDH
BO06090.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII33-PA | 275 | CG7885-PA | 1..275 | 1..275 | 1445 | 100 | Plus |
| CG3756-PA | 333 | CG3756-PA | 43..333 | 9..267 | 257 | 27 | Plus |
