Clone BO06093 Report

Search the DGRC for BO06093

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG8701-RA
Protein status:BO06093.pep: validated full length
Sequenced Size:772

Clone Sequence Records

BO06093.3prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-02

> BO06093.3prime
ATGGTCTAGAAAGCTTGCAGCCCTACTGCCCCCGCAGTTTGGCTTCCGTG
GATTTCCTTCGAACTTCTTCAGCTCACGAATCAGGTCACAGGAGCTTGGA
ACATCTAGGCAGTTGCATTCAACGCCCCGAGGCTTGCGAAGACGAGAGCG
GCTGCACTCGGAGAAGGAAGGATAGGGGGCCTTGACTTTGACGCAGTCGG
TCTTACGTCTAACGACGTGGCAAGAGACGCTGTCTACGGCCTTACAGCCG
GGCATCTTGATTCTAGGGCAGGGTCCTCCCTCCGTGGGGCATTCGACATT
CGTGGGACACTCGGCGGATGTCACGAACTTCTTGCGCTTGCGCCTTGGGA
TCGGCGGACGAATTCCCGCCTCGTAGCAGCAGATCTTCTTGGGCTTTATC
TTTATGGGCGGACACTCCACCCAGGTGACCTGGTACTTGCGCGTGGCCTT
GTCAGAGATCTTGTAGTAGCATTGGTCGTACGGGGGGAACCGTTCCGCGC
AGGGATCGGTGCAGCACTCCGGCGGCTGCTTCACCAGATGATGGAACTGG
AAGCCGTCCTCCTTCTTCGGCGGTGGTTTCTTCGCGAACCGGGGGTCTCC
ACAAGCGGTAAAATTACCGCAACCCTTTCCAGAACTGTCACTGCACTTTG
GAGATGGATTGTGGTCCTTTGCGAAAGCGCGATGGCAGACCACGCTCGCA
AAGCTGGGTATTACTCGATTTTGGGTTTTCGTTCCAATACTGCGCCACAT
AGACATGTCGACTGATAACT

BO06093.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-PA 741 CG8701-RA 1..738 756..19 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-RA 1070 CG8701-RA 179..917 757..19 3695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8371251..8371989 757..19 3695 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:11:27 has no hits.

BO06093.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:51 Download gff for BO06093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:48 Download gff for BO06093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-PA 1..741 15..756 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:58:04 Download gff for BO06093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 171..922 11..767 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:27 Download gff for BO06093.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 171..922 11..767 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:27 Download gff for BO06093.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8371243..8371994 11..767 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:58:04 Download gff for BO06093.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4258748..4259499 11..767 98   Minus

BO06093.5prime Sequence

770 bp (769 high quality bases) assembled on 2005-12-02

> BO06093.5prime
GAAGTTATCAGTCGACATGTCTATGTGGCGCAGTATTGGAACGAAAACCC
AAAATCGAGTAATACCCAGCTTTGCGAGCGTGGTCTGCCATCGCGCTTTC
GCAAAGGACCACAATCCATCTCCAAAGTGCAGTGACAGTTCTGGAAAGGG
TTGCGGTAATTTTACCGCTTGTGGAGACCCCCGGTTCGCGAAGAAACCAC
CGCCGAAGAAGGAGGACGGCTTCCAGTTCCATCATCTGGTGAAGCAGCCG
CCGGAGTGCTGCACCGATCCCTGCGCGGAACGGTTCCCCCCGTACGACCA
ATGCTACTACAAGATCTCTGACAAGGCCACGCGCAAGTACCAGGTCACCT
GGGTGGAGTGTCCGCCCATAAAGATAAAGCCCAAGAAGATCTGCTGCTAC
GAGGCGGGAATTCGTCCGCCGATCCCAAGGCGCAAGCGCAAGAAGTTCGT
GACATCCGCCGAGTGTCCCACGAATGTCGAATGCCCCACGGAGGGAGGAC
CCTGCCCTAGAATCAAGATGCCCGGCTGTAAGGCCGTAGACAGCGTCTCT
TGCCACGTCGTTAGACGTAAGACCGACTGCGTCAAAGTCAAGGCCCCCTA
TCCTTCCTTCTCCGAGTGCAGCCGCTCTCGTCTTCGCAAGCCTCGGGGCG
TTGAATGCAACTGCCTAGATGTTCCAAGCTCCTGTGACCTGATTCGTGAG
CTGAAGAAGTTCGAAGGAAATCCACGGAAGCCAAACTGCGGGGGCAGTAG
GGCTGCAAGCTTTCTAGACC

BO06093.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-PA 741 CG8701-RA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-RA 1070 CG8701-RA 179..917 16..754 3695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8371251..8371989 16..754 3695 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:50:22 has no hits.

BO06093.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:52 Download gff for BO06093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:50 Download gff for BO06093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-PA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:46 Download gff for BO06093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 171..922 6..762 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:54 Download gff for BO06093.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 171..922 6..762 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:54 Download gff for BO06093.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8371243..8371994 6..762 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:46 Download gff for BO06093.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4258748..4259499 6..762 98   Plus

BO06093.complete Sequence

772 bp (772 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630286

> BO06093.complete
GAAGTTATCAGTCGACATGTCTATGTGGCGCAGTATTGGAACGAAAACCC
AAAATCGAGTAATACCCAGCTTTGCGAGCGTGGTCTGCCATCGCGCTTTC
GCAAAGGACCACAATCCATCTCCAAAGTGCAGTGACAGTTCTGGAAAGGG
TTGCGGTAATTTTACCGCTTGTGGAGACCCCCGGTTCGCGAAGAAACCAC
CGCCGAAGAAGGAGGACGGCTTCCAGTTCCATCATCTGGTGAAGCAGCCG
CCGGAGTGCTGCACCGATCCCTGCGCGGAACGGTTCCCCCCGTACGACCA
ATGCTACTACAAGATCTCTGACAAGGCCACGCGCAAGTACCAGGTCACCT
GGGTGGAGTGTCCGCCCATAAAGATAAAGCCCAAGAAGATCTGCTGCTAC
GAGGCGGGAATTCGTCCGCCGATCCCAAGGCGCAAGCGCAAGAAGTTCGT
GACATCCGCCGAGTGTCCCACGAATGTCGAATGCCCCACGGAGGGAGGAC
CCTGCCCTAGAATCAAGATGCCCGGCTGTAAGGCCGTAGACAGCGTCTCT
TGCCACGTCGTTAGACGTAAGACCGACTGCGTCAAAGTCAAGGCCCCCTA
TCCTTCCTTCTCCGAGTGCAGCCGCTCTCGTCTTCGCAAGCCTCGGGGCG
TTGAATGCAACTGCCTAGATGTTCCAAGCTCCTGTGACCTGATTCGTGAG
CTGAAGAAGTTCGAAGGAAATCCACGGAAGCCAAACTGCGGGGGCAGTAG
GGCTGCAAGCTTTCTAGACCAT

BO06093.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-RA 741 CG8701-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-RA 1070 CG8701-RA 179..917 16..754 3695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8371251..8371989 16..754 3695 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:41:30 has no hits.

BO06093.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:50 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 1..741 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:03 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 171..922 6..762 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:31 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 180..917 17..756 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:51 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 171..922 6..762 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:49 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
CG8701-RA 180..917 17..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:49 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8371252..8371989 17..756 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:31 Download gff for BO06093.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4258757..4259494 17..756 99   Plus

BO06093.pep Sequence

Translation from 16 to 772

> BO06093.pep
MSMWRSIGTKTQNRVIPSFASVVCHRAFAKDHNPSPKCSDSSGKGCGNFT
ACGDPRFAKKPPPKKEDGFQFHHLVKQPPECCTDPCAERFPPYDQCYYKI
SDKATRKYQVTWVECPPIKIKPKKICCYEAGIRPPIPRRKRKKFVTSAEC
PTNVECPTEGGPCPRIKMPGCKAVDSVSCHVVRRKTDCVKVKAPYPSFSE
CSRSRLRKPRGVECNCLDVPSSCDLIRELKKFEGNPRKPNCGGSRAASFL
DH

BO06093.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8701-PA 246 CG8701-PA 1..246 1..246 1395 100 Plus
CG2127-PB 289 CG2127-PB 58..274 36..231 338 42.5 Plus
CG2127-PA 305 CG2127-PA 74..290 36..231 338 42.5 Plus
CG33340-PA 229 CG33340-PA 46..223 52..231 295 41.2 Plus
CG4691-PA 262 CG4691-PA 84..259 64..231 272 35.7 Plus