Clone Sequence Records
BO06093.3prime Sequence
770 bp (769 high quality bases) assembled on 2005-12-02
> BO06093.3prime
ATGGTCTAGAAAGCTTGCAGCCCTACTGCCCCCGCAGTTTGGCTTCCGTG
GATTTCCTTCGAACTTCTTCAGCTCACGAATCAGGTCACAGGAGCTTGGA
ACATCTAGGCAGTTGCATTCAACGCCCCGAGGCTTGCGAAGACGAGAGCG
GCTGCACTCGGAGAAGGAAGGATAGGGGGCCTTGACTTTGACGCAGTCGG
TCTTACGTCTAACGACGTGGCAAGAGACGCTGTCTACGGCCTTACAGCCG
GGCATCTTGATTCTAGGGCAGGGTCCTCCCTCCGTGGGGCATTCGACATT
CGTGGGACACTCGGCGGATGTCACGAACTTCTTGCGCTTGCGCCTTGGGA
TCGGCGGACGAATTCCCGCCTCGTAGCAGCAGATCTTCTTGGGCTTTATC
TTTATGGGCGGACACTCCACCCAGGTGACCTGGTACTTGCGCGTGGCCTT
GTCAGAGATCTTGTAGTAGCATTGGTCGTACGGGGGGAACCGTTCCGCGC
AGGGATCGGTGCAGCACTCCGGCGGCTGCTTCACCAGATGATGGAACTGG
AAGCCGTCCTCCTTCTTCGGCGGTGGTTTCTTCGCGAACCGGGGGTCTCC
ACAAGCGGTAAAATTACCGCAACCCTTTCCAGAACTGTCACTGCACTTTG
GAGATGGATTGTGGTCCTTTGCGAAAGCGCGATGGCAGACCACGCTCGCA
AAGCTGGGTATTACTCGATTTTGGGTTTTCGTTCCAATACTGCGCCACAT
AGACATGTCGACTGATAACT
BO06093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-PA | 741 | CG8701-RA | 1..738 | 756..19 | 3690 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-RA | 1070 | CG8701-RA | 179..917 | 757..19 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8371251..8371989 | 757..19 | 3695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:11:27 has no hits.
BO06093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:51 Download gff for
BO06093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:48 Download gff for
BO06093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-PA | 1..741 | 15..756 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:58:04 Download gff for
BO06093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 171..922 | 11..767 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:08:27 Download gff for
BO06093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 171..922 | 11..767 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:08:27 Download gff for
BO06093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8371243..8371994 | 11..767 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:58:04 Download gff for
BO06093.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4258748..4259499 | 11..767 | 98 | | Minus |
BO06093.5prime Sequence
770 bp (769 high quality bases) assembled on 2005-12-02
> BO06093.5prime
GAAGTTATCAGTCGACATGTCTATGTGGCGCAGTATTGGAACGAAAACCC
AAAATCGAGTAATACCCAGCTTTGCGAGCGTGGTCTGCCATCGCGCTTTC
GCAAAGGACCACAATCCATCTCCAAAGTGCAGTGACAGTTCTGGAAAGGG
TTGCGGTAATTTTACCGCTTGTGGAGACCCCCGGTTCGCGAAGAAACCAC
CGCCGAAGAAGGAGGACGGCTTCCAGTTCCATCATCTGGTGAAGCAGCCG
CCGGAGTGCTGCACCGATCCCTGCGCGGAACGGTTCCCCCCGTACGACCA
ATGCTACTACAAGATCTCTGACAAGGCCACGCGCAAGTACCAGGTCACCT
GGGTGGAGTGTCCGCCCATAAAGATAAAGCCCAAGAAGATCTGCTGCTAC
GAGGCGGGAATTCGTCCGCCGATCCCAAGGCGCAAGCGCAAGAAGTTCGT
GACATCCGCCGAGTGTCCCACGAATGTCGAATGCCCCACGGAGGGAGGAC
CCTGCCCTAGAATCAAGATGCCCGGCTGTAAGGCCGTAGACAGCGTCTCT
TGCCACGTCGTTAGACGTAAGACCGACTGCGTCAAAGTCAAGGCCCCCTA
TCCTTCCTTCTCCGAGTGCAGCCGCTCTCGTCTTCGCAAGCCTCGGGGCG
TTGAATGCAACTGCCTAGATGTTCCAAGCTCCTGTGACCTGATTCGTGAG
CTGAAGAAGTTCGAAGGAAATCCACGGAAGCCAAACTGCGGGGGCAGTAG
GGCTGCAAGCTTTCTAGACC
BO06093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-PA | 741 | CG8701-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:50:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-RA | 1070 | CG8701-RA | 179..917 | 16..754 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8371251..8371989 | 16..754 | 3695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:50:22 has no hits.
BO06093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:52 Download gff for
BO06093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:50 Download gff for
BO06093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-PA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:14:46 Download gff for
BO06093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 171..922 | 6..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:54 Download gff for
BO06093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 171..922 | 6..762 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:54 Download gff for
BO06093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8371243..8371994 | 6..762 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:14:46 Download gff for
BO06093.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4258748..4259499 | 6..762 | 98 | | Plus |
BO06093.complete Sequence
772 bp (772 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630286
> BO06093.complete
GAAGTTATCAGTCGACATGTCTATGTGGCGCAGTATTGGAACGAAAACCC
AAAATCGAGTAATACCCAGCTTTGCGAGCGTGGTCTGCCATCGCGCTTTC
GCAAAGGACCACAATCCATCTCCAAAGTGCAGTGACAGTTCTGGAAAGGG
TTGCGGTAATTTTACCGCTTGTGGAGACCCCCGGTTCGCGAAGAAACCAC
CGCCGAAGAAGGAGGACGGCTTCCAGTTCCATCATCTGGTGAAGCAGCCG
CCGGAGTGCTGCACCGATCCCTGCGCGGAACGGTTCCCCCCGTACGACCA
ATGCTACTACAAGATCTCTGACAAGGCCACGCGCAAGTACCAGGTCACCT
GGGTGGAGTGTCCGCCCATAAAGATAAAGCCCAAGAAGATCTGCTGCTAC
GAGGCGGGAATTCGTCCGCCGATCCCAAGGCGCAAGCGCAAGAAGTTCGT
GACATCCGCCGAGTGTCCCACGAATGTCGAATGCCCCACGGAGGGAGGAC
CCTGCCCTAGAATCAAGATGCCCGGCTGTAAGGCCGTAGACAGCGTCTCT
TGCCACGTCGTTAGACGTAAGACCGACTGCGTCAAAGTCAAGGCCCCCTA
TCCTTCCTTCTCCGAGTGCAGCCGCTCTCGTCTTCGCAAGCCTCGGGGCG
TTGAATGCAACTGCCTAGATGTTCCAAGCTCCTGTGACCTGATTCGTGAG
CTGAAGAAGTTCGAAGGAAATCCACGGAAGCCAAACTGCGGGGGCAGTAG
GGCTGCAAGCTTTCTAGACCAT
BO06093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-RA | 741 | CG8701-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-RA | 1070 | CG8701-RA | 179..917 | 16..754 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8371251..8371989 | 16..754 | 3695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:41:30 has no hits.
BO06093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:50 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 1..741 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:03 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 171..922 | 6..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:31 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 180..917 | 17..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:51 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 171..922 | 6..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:49 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8701-RA | 180..917 | 17..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:49 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8371252..8371989 | 17..756 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:31 Download gff for
BO06093.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4258757..4259494 | 17..756 | 99 | | Plus |
BO06093.pep Sequence
Translation from 16 to 772
> BO06093.pep
MSMWRSIGTKTQNRVIPSFASVVCHRAFAKDHNPSPKCSDSSGKGCGNFT
ACGDPRFAKKPPPKKEDGFQFHHLVKQPPECCTDPCAERFPPYDQCYYKI
SDKATRKYQVTWVECPPIKIKPKKICCYEAGIRPPIPRRKRKKFVTSAEC
PTNVECPTEGGPCPRIKMPGCKAVDSVSCHVVRRKTDCVKVKAPYPSFSE
CSRSRLRKPRGVECNCLDVPSSCDLIRELKKFEGNPRKPNCGGSRAASFL
DH
BO06093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8701-PA | 246 | CG8701-PA | 1..246 | 1..246 | 1395 | 100 | Plus |
CG2127-PB | 289 | CG2127-PB | 58..274 | 36..231 | 338 | 42.5 | Plus |
CG2127-PA | 305 | CG2127-PA | 74..290 | 36..231 | 338 | 42.5 | Plus |
CG33340-PA | 229 | CG33340-PA | 46..223 | 52..231 | 295 | 41.2 | Plus |
CG4691-PA | 262 | CG4691-PA | 84..259 | 64..231 | 272 | 35.7 | Plus |