Clone BO06094 Report

Search the DGRC for BO06094

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:60
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG3223-RA
Protein status:BO06094.pep: validated full length
Sequenced Size:1279

Clone Sequence Records

BO06094.3prime Sequence

851 bp (770 high quality bases) assembled on 2005-12-02

> BO06094.3prime
ATGGTCTAGAAAGCTTGCATTCATGCTCAGCATAAGCAGATTAATAGCGT
GTTCCACATTCCCATCGGAAAGTTCTAGATAACTAACGTTCTGAGTGTGA
TTAATGAAGCCCATGGCGGCCATGGTACGCAGTTGTTCGGTGAACCGATG
GCGACGGTAGCGGCGTGGCAGCACATCACTGTCGTCTCCACCATCGTCCT
CGTCATCTACATCATCGGCTGGTGCTGTGGCGGCTTGCTCTGGTACTGGT
CCTTCTCCGGACTCCACCTCCATGTTCTCCACAGGCGCCGGTTGATCCTG
CGACAGGGACTGAAAAGCGCGGGCCAGCTCGTTGCGGAGCAACTCTGAGG
ATATGGATCCGCTGCTGATGGCTCCACTGCTGCTTCCTGCGCCTGTTCCC
GCTGCTCCTCCAACGCCTGCTAATGGCGCCGAGGTGGTTCTAGGTCTTTC
ATCACCCTGCACGGCCTCGTCCGCGTTTCTCTGCGCAATATTCGACAGTG
AATTAAACGGGGTCACGTTAGCCAATGCGTTAGCCAGTTGCTGGCGGCTA
ATCTGACGGATGTTGGCCATCTCATCACGCCGATTGGCGGCCGCGGCAGC
TGCCACGGCTGTGCTGCTGCTTCCACCACTGCTGCTGCTGCCTGCACCCA
GAGAGTTTTCCTCCTCTGACGAAGTAGTAGACTCCGAAGCAGCTTGCTCC
TGCAACTGCGTGGCCGAGCTATTTCTGGCTAGCTCCTTGCGAATGGTGTC
CACTATGAATGGAGCGGCCTCGCAGATGAGGGGATAATCTTTAACGAGAT
TTTGGACCACTTCCGGCTCGTGCAGCATGTTGAACAGTACGGAGTCGCGA
A

BO06094.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 1248 CG3223-RA 413..1245 851..19 4165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1488 CG3223-RA 501..1333 851..19 4165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8010178..8010863 704..19 3430 100 Minus
3R 32079331 3R 8009973..8010119 851..705 735 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:26:45 has no hits.

BO06094.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:53 Download gff for BO06094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 415..1248 15..849 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:51 Download gff for BO06094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 415..1248 15..849 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:04 Download gff for BO06094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 501..1336 15..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:50 Download gff for BO06094.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 501..1336 15..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:50 Download gff for BO06094.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8009973..8010119 705..851 100 -> Minus
3R 8010178..8010866 15..704 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:04 Download gff for BO06094.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835695..3835841 705..851 100 -> Minus
arm_3R 3835900..3836588 15..704 99   Minus

BO06094.5prime Sequence

903 bp (796 high quality bases) assembled on 2005-12-02

> BO06094.5prime
GAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGC
TGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCC
TACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAG
CGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCC
TCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATT
AAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAA
GCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTA
CCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTT
AGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAA
CATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCC
TCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTA
GCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTC
TACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCA
GTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGG
CGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAA
CGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGA
GAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCTCG
GCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAG
CAG

BO06094.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 1248 CG3223-RA 1..887 17..903 4435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1488 CG3223-RA 89..975 17..903 4435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8009702..8010119 158..575 2090 100 Plus
3R 32079331 3R 8010178..8010505 576..903 1640 100 Plus
3R 32079331 3R 8009488..8009629 17..158 710 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:12:02 has no hits.

BO06094.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:54 Download gff for BO06094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 1..887 17..903 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:52 Download gff for BO06094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-PA 1..887 17..903 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:22 Download gff for BO06094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 78..975 7..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:49 Download gff for BO06094.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 78..975 7..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:49 Download gff for BO06094.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8010178..8010505 576..903 100   Plus
3R 8009477..8009629 7..158 97 -> Plus
3R 8009703..8010119 159..575 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:22 Download gff for BO06094.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835199..3835351 7..158 97 -> Plus
arm_3R 3835425..3835841 159..575 100 -> Plus
arm_3R 3835900..3836227 576..903 100   Plus

BO06094.complete Sequence

1279 bp (1279 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630287

> BO06094.complete
GAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGC
TGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCC
TACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAG
CGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCC
TCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATT
AAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAA
GCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTA
CCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTT
AGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAA
CATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCC
TCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTA
GCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTC
TACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCA
GTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGG
CGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAA
CGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGA
GAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCTCG
GCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAG
CAGTGGAGCCATCAGCAGCGGATCCATATCCTCAGAGTTGCTCCGCAACG
AGCTGGCCCGCGCTTTTCAGTCCCTGTCGCAGGATCAACCGGCGCCTGTG
GAGAACATGGAGGTGGAGTCCGGAGAAGGACCAGTACCAGAGCAAGCCGC
CACAGCACCAGCCGATGATGTAGATGACGAGGACGATGGTGGAGACGACA
GTGATGTGCTGCCACGCCGCTACCGTCGCCATCGGTTCACCGAACAACTG
CGTACCATGGCCGCCATGGGCTTCATTAATCACACTCAGAACGTTAGTTA
TCTAGAACTTTCCGATGGGAATGTGGAACACGCTATTAATCTGCTTATGC
TGAGCATGAATGCAAGCTTTCTAGACCAT

BO06094.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1248 CG3223-PA 1..1245 17..1261 6225 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-RA 1488 CG3223-RA 89..1333 17..1261 6225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8010178..8010863 576..1261 3430 100 Plus
3R 32079331 3R 8009702..8010119 158..575 2090 100 Plus
3R 32079331 3R 8009488..8009629 17..158 710 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:43:26 has no hits.

BO06094.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:51 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 1..1248 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:04 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 107..1365 7..1265 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:19 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 89..1333 17..1263 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:52 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 107..1365 7..1265 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:23 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
CG3223-RA 89..1333 17..1263 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:23 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8009488..8009629 17..158 100 -> Plus
3R 8009703..8010119 159..575 100 -> Plus
3R 8010178..8010863 576..1263 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:19 Download gff for BO06094.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3835210..3835351 17..158 100 -> Plus
arm_3R 3835425..3835841 159..575 100 -> Plus
arm_3R 3835900..3836585 576..1263 99   Plus

BO06094.pep Sequence

Translation from 16 to 1279

> BO06094.pep
MHTVYALLKNKLSDVHPLHNIDLTRDVAYLKAVVTKEMHLQFDASELEII
HHGRVLEDADTLNRTLQPNAVIHCFQKIKRYSPYVPPAAAEINTKHIQEL
FSLTSHLQISVTSRFNILQKILAEYPEFRRNLGAQALIRDSVLFNMLHEP
EVVQNLVKDYPLICEAAPFIVDTIRKELARNSSATQLQEQAASESTTSSE
EENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQISRQQLANALANV
TPFNSLSNIAQRNADEAVQGDERPRTTSAPLAGVGGAAGTGAGSSSGAIS
SGSISSELLRNELARAFQSLSQDQPAPVENMEVESGEGPVPEQAATAPAD
DVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSD
GNVEHAINLLMLSMNASFLDH

BO06094.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3223-PA 415 CG3223-PA 1..415 1..415 2078 100 Plus