Clone Sequence Records
BO06094.3prime Sequence
851 bp (770 high quality bases) assembled on 2005-12-02
> BO06094.3prime
ATGGTCTAGAAAGCTTGCATTCATGCTCAGCATAAGCAGATTAATAGCGT
GTTCCACATTCCCATCGGAAAGTTCTAGATAACTAACGTTCTGAGTGTGA
TTAATGAAGCCCATGGCGGCCATGGTACGCAGTTGTTCGGTGAACCGATG
GCGACGGTAGCGGCGTGGCAGCACATCACTGTCGTCTCCACCATCGTCCT
CGTCATCTACATCATCGGCTGGTGCTGTGGCGGCTTGCTCTGGTACTGGT
CCTTCTCCGGACTCCACCTCCATGTTCTCCACAGGCGCCGGTTGATCCTG
CGACAGGGACTGAAAAGCGCGGGCCAGCTCGTTGCGGAGCAACTCTGAGG
ATATGGATCCGCTGCTGATGGCTCCACTGCTGCTTCCTGCGCCTGTTCCC
GCTGCTCCTCCAACGCCTGCTAATGGCGCCGAGGTGGTTCTAGGTCTTTC
ATCACCCTGCACGGCCTCGTCCGCGTTTCTCTGCGCAATATTCGACAGTG
AATTAAACGGGGTCACGTTAGCCAATGCGTTAGCCAGTTGCTGGCGGCTA
ATCTGACGGATGTTGGCCATCTCATCACGCCGATTGGCGGCCGCGGCAGC
TGCCACGGCTGTGCTGCTGCTTCCACCACTGCTGCTGCTGCCTGCACCCA
GAGAGTTTTCCTCCTCTGACGAAGTAGTAGACTCCGAAGCAGCTTGCTCC
TGCAACTGCGTGGCCGAGCTATTTCTGGCTAGCTCCTTGCGAATGGTGTC
CACTATGAATGGAGCGGCCTCGCAGATGAGGGGATAATCTTTAACGAGAT
TTTGGACCACTTCCGGCTCGTGCAGCATGTTGAACAGTACGGAGTCGCGA
A
BO06094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-PA | 1248 | CG3223-RA | 413..1245 | 851..19 | 4165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-RA | 1488 | CG3223-RA | 501..1333 | 851..19 | 4165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8010178..8010863 | 704..19 | 3430 | 100 | Minus |
3R | 32079331 | 3R | 8009973..8010119 | 851..705 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:26:45 has no hits.
BO06094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:53 Download gff for
BO06094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-PA | 415..1248 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:51 Download gff for
BO06094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-PA | 415..1248 | 15..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:04 Download gff for
BO06094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 501..1336 | 15..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:43:50 Download gff for
BO06094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 501..1336 | 15..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:43:50 Download gff for
BO06094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8009973..8010119 | 705..851 | 100 | -> | Minus |
3R | 8010178..8010866 | 15..704 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:04 Download gff for
BO06094.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3835695..3835841 | 705..851 | 100 | -> | Minus |
arm_3R | 3835900..3836588 | 15..704 | 99 | | Minus |
BO06094.5prime Sequence
903 bp (796 high quality bases) assembled on 2005-12-02
> BO06094.5prime
GAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGC
TGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCC
TACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAG
CGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCC
TCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATT
AAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAA
GCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTA
CCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTT
AGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAA
CATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCC
TCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTA
GCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTC
TACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCA
GTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGG
CGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAA
CGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGA
GAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCTCG
GCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAG
CAG
BO06094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-PA | 1248 | CG3223-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-RA | 1488 | CG3223-RA | 89..975 | 17..903 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8009702..8010119 | 158..575 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 8010178..8010505 | 576..903 | 1640 | 100 | Plus |
3R | 32079331 | 3R | 8009488..8009629 | 17..158 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:12:02 has no hits.
BO06094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:54 Download gff for
BO06094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:52 Download gff for
BO06094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:22 Download gff for
BO06094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 78..975 | 7..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:49 Download gff for
BO06094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 78..975 | 7..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:49 Download gff for
BO06094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8010178..8010505 | 576..903 | 100 | | Plus |
3R | 8009477..8009629 | 7..158 | 97 | -> | Plus |
3R | 8009703..8010119 | 159..575 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:22 Download gff for
BO06094.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3835199..3835351 | 7..158 | 97 | -> | Plus |
arm_3R | 3835425..3835841 | 159..575 | 100 | -> | Plus |
arm_3R | 3835900..3836227 | 576..903 | 100 | | Plus |
BO06094.complete Sequence
1279 bp (1279 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630287
> BO06094.complete
GAAGTTATCAGTCGACATGCATACCGTGTACGCGCTTCTGAAGAACAAGC
TGAGCGATGTGCATCCCCTACACAACATCGATCTGACGCGGGATGTGGCC
TACCTAAAGGCGGTGGTGACCAAAGAGATGCACTTGCAATTCGACGCCAG
CGAGTTGGAGATCATCCACCACGGACGCGTGCTGGAGGACGCAGACACCC
TCAACCGAACGCTGCAGCCCAACGCCGTGATCCACTGCTTTCAGAAGATT
AAACGTTACTCGCCGTATGTGCCGCCAGCCGCCGCCGAAATCAACACGAA
GCATATTCAAGAGCTGTTTTCGTTGACCTCGCACCTGCAAATCAGCGTTA
CCTCGCGGTTCAACATTCTGCAGAAGATACTCGCTGAGTATCCGGAATTT
AGGCGAAATCTGGGCGCCCAGGCCCTTATTCGCGACTCCGTACTGTTCAA
CATGCTGCACGAGCCGGAAGTGGTCCAAAATCTCGTTAAAGATTATCCCC
TCATCTGCGAGGCCGCTCCATTCATAGTGGACACCATTCGCAAGGAGCTA
GCCAGAAATAGCTCGGCCACGCAGTTGCAGGAGCAAGCTGCTTCGGAGTC
TACTACTTCGTCAGAGGAGGAAAACTCTCTGGGTGCAGGCAGCAGCAGCA
GTGGTGGAAGCAGCAGCACAGCCGTGGCAGCTGCCGCGGCCGCCAATCGG
CGTGATGAGATGGCCAACATCCGTCAGATTAGCCGCCAGCAACTGGCTAA
CGCATTGGCTAACGTGACCCCGTTTAATTCACTGTCGAATATTGCGCAGA
GAAACGCGGACGAGGCCGTGCAGGGTGATGAAAGACCTAGAACCACCTCG
GCGCCATTAGCAGGCGTTGGAGGAGCAGCGGGAACAGGCGCAGGAAGCAG
CAGTGGAGCCATCAGCAGCGGATCCATATCCTCAGAGTTGCTCCGCAACG
AGCTGGCCCGCGCTTTTCAGTCCCTGTCGCAGGATCAACCGGCGCCTGTG
GAGAACATGGAGGTGGAGTCCGGAGAAGGACCAGTACCAGAGCAAGCCGC
CACAGCACCAGCCGATGATGTAGATGACGAGGACGATGGTGGAGACGACA
GTGATGTGCTGCCACGCCGCTACCGTCGCCATCGGTTCACCGAACAACTG
CGTACCATGGCCGCCATGGGCTTCATTAATCACACTCAGAACGTTAGTTA
TCTAGAACTTTCCGATGGGAATGTGGAACACGCTATTAATCTGCTTATGC
TGAGCATGAATGCAAGCTTTCTAGACCAT
BO06094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-RA | 1248 | CG3223-PA | 1..1245 | 17..1261 | 6225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-RA | 1488 | CG3223-RA | 89..1333 | 17..1261 | 6225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8010178..8010863 | 576..1261 | 3430 | 100 | Plus |
3R | 32079331 | 3R | 8009702..8010119 | 158..575 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 8009488..8009629 | 17..158 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:43:26 has no hits.
BO06094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:51 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 1..1248 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:04 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 107..1365 | 7..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:19 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 89..1333 | 17..1263 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:52 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 107..1365 | 7..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:23 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3223-RA | 89..1333 | 17..1263 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:23 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8009488..8009629 | 17..158 | 100 | -> | Plus |
3R | 8009703..8010119 | 159..575 | 100 | -> | Plus |
3R | 8010178..8010863 | 576..1263 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:19 Download gff for
BO06094.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3835210..3835351 | 17..158 | 100 | -> | Plus |
arm_3R | 3835425..3835841 | 159..575 | 100 | -> | Plus |
arm_3R | 3835900..3836585 | 576..1263 | 99 | | Plus |
BO06094.pep Sequence
Translation from 16 to 1279
> BO06094.pep
MHTVYALLKNKLSDVHPLHNIDLTRDVAYLKAVVTKEMHLQFDASELEII
HHGRVLEDADTLNRTLQPNAVIHCFQKIKRYSPYVPPAAAEINTKHIQEL
FSLTSHLQISVTSRFNILQKILAEYPEFRRNLGAQALIRDSVLFNMLHEP
EVVQNLVKDYPLICEAAPFIVDTIRKELARNSSATQLQEQAASESTTSSE
EENSLGAGSSSSGGSSSTAVAAAAAANRRDEMANIRQISRQQLANALANV
TPFNSLSNIAQRNADEAVQGDERPRTTSAPLAGVGGAAGTGAGSSSGAIS
SGSISSELLRNELARAFQSLSQDQPAPVENMEVESGEGPVPEQAATAPAD
DVDDEDDGGDDSDVLPRRYRRHRFTEQLRTMAAMGFINHTQNVSYLELSD
GNVEHAINLLMLSMNASFLDH
BO06094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3223-PA | 415 | CG3223-PA | 1..415 | 1..415 | 2078 | 100 | Plus |