Clone Sequence Records
BO06095.3prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-02
> BO06095.3prime
ATGGTCTAGAAAGCTTGCCCACTGGAAGATGGTCAGCATGGCGCGTAGCA
GCTCTGGGATGTCCCAGCCGTTCTTGCGCAGGGTGCGCAGTGGCTTCACC
ACGTCGCGCTTGTTAATGTTGGCCTTGAGCGTGGCCTGGAATTGCTTGGA
GACCACCGCCTTGGTGAAGTTGCCGAAGTTGGTGTGATTCGCCTGGGACT
GTGCCACATAGTTGTGCACCTCCTGCTTCGGCATGATGGAGAGCAGATCG
CCGACGAAGGTGTGGTGCTTCACGGCCTTGCAGTCGCAGTTGCGATCGGG
CTGGCGGACGGGCAGTATGATGCAATGGAAGATATCCGCCACGGTCTCAA
TGTCGGCGGTATCCACGCTCTCCGACTGCAGTTCCTTGAGAACGGTCTTG
TAGGCATCCGTATCCGTGAGCTGCTGGGTGGTCCTCTCGAATCCGGCTGT
GTTGTAGTACCGCATGGCGCGGCGGAACTTCAGATCACAATTGTAGTGCA
CCTCGATCAGATTGAGCAGGGCCTCCTGATTGATCATAGCGCGAATGTGC
TGGAAGTTGGCGCACAGGGCGGAGTCGTGATCGGTTCTATTCGGATTGTT
ATTATCGGTATTGTTATTTTCTGGTGGACACCATTCCTCTGATTCCTCGG
ACACCTCAATGTAATGTGGCTGTGCGATCGTGTGGCAGGCGAATATGGCC
ACGGCCACGGTCAACAGTATCAACGTCTTCGCGTCCATGTCGACTGATAA
CT
BO06095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-PA | 723 | CG3906-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-RA | 849 | CG3906-RA | 26..745 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23511577..23512200 | 115..738 | 3120 | 100 | Plus |
| 2R | 25286936 | 2R | 23511390..23511485 | 19..114 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:58:42 has no hits.
BO06095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:55 Download gff for
BO06095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:53 Download gff for
BO06095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:28 Download gff for
BO06095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 18..745 | 19..745 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:08 Download gff for
BO06095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 18..745 | 19..745 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:08 Download gff for
BO06095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23511390..23511485 | 19..114 | 100 | <- | Plus |
| 2R | 23511577..23512205 | 115..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:28 Download gff for
BO06095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19398913..19399008 | 19..114 | 100 | <- | Plus |
| arm_2R | 19399100..19399728 | 115..745 | 99 | | Plus |
BO06095.5prime Sequence
752 bp (727 high quality bases) assembled on 2005-12-02
> BO06095.5prime
GAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCGTGG
CCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATTGAG
GTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATACCGA
TAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCAACT
TCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTGATC
GAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTACTA
CAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGGATG
CCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACCGCC
GACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGTCCG
CCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCTTCG
TCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTATGTG
GCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGCGGT
GGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGCGCG
ACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATCCCA
GAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGGCAAGCTTTCTAGA
CC
BO06095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-PA | 723 | CG3906-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-RA | 849 | CG3906-RA | 26..745 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23511577..23512200 | 640..17 | 3120 | 100 | Minus |
| 2R | 25286936 | 2R | 23511390..23511485 | 736..641 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:51:57 has no hits.
BO06095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:39:56 Download gff for
BO06095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:08:54 Download gff for
BO06095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:12 Download gff for
BO06095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 18..745 | 10..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:30:41 Download gff for
BO06095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 18..745 | 10..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:30:41 Download gff for
BO06095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23511390..23511485 | 641..736 | 100 | <- | Minus |
| 2R | 23511577..23512205 | 10..640 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:12 Download gff for
BO06095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19398913..19399008 | 641..736 | 100 | <- | Minus |
| arm_2R | 19399100..19399728 | 10..640 | 99 | | Minus |
BO06095.complete Sequence
754 bp (754 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630288
> BO06095.complete
GAAGTTATCAGTCGACATGGACGCGAAGACGTTGATACTGTTGACCGTGG
CCGTGGCCATATTCGCCTGCCACACGATCGCACAGCCACATTACATTGAG
GTGTCCGAGGAATCAGAGGAATGGTGTCCACCAGAAAATAACAATACCGA
TAATAACAATCCGAATAGAACCGATCACGACTCCGCCCTGTGCGCCAACT
TCCAGCACATTCGCGCTATGATCAATCAGGAGGCCCTGCTCAATCTGATC
GAGGTGCACTACAATTGTGATCTGAAGTTCCGCCGCGCCATGCGGTACTA
CAACACAGCCGGATTCGAGAGGACCACCCAGCAGCTCACGGATACGGATG
CCTACAAGACCGTTCTCAAGGAACTGCAGTCGGAGAGCGTGGATACCGCC
GACATTGAGACCGTGGCGGATATCTTCCATTGCATCATACTGCCCGTCCG
CCAGCCCGATCGCAACTGCGACTGCAAGGCCGTGAAGCACCACACCTTCG
TCGGCGATCTGCTCTCCATCATGCCGAAGCAGGAGGTGCACAACTATGTG
GCACAGTCCCAGGCGAATCACACCAACTTCGGCAACTTCACCAAGGCGGT
GGTCTCCAAGCAATTCCAGGCCACGCTCAAGGCCAACATTAACAAGCGCG
ACGTGGTGAAGCCACTGCGCACCCTGCGCAAGAACGGCTGGGACATCCCA
GAGCTGCTACGCGCCATGCTGACCATCTTCCAGTGGGCAAGCTTTCTAGA
CCAT
BO06095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-RA | 723 | CG3906-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-RA | 849 | CG3906-RA | 26..745 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23511577..23512200 | 640..17 | 3120 | 100 | Minus |
| 2R | 25286936 | 2R | 23511390..23511485 | 736..641 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:33:07 has no hits.
BO06095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:53 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:52:07 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 17..744 | 10..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:32 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 26..745 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:53 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 17..744 | 10..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:02 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3906-RA | 26..745 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:02 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23511387..23511485 | 641..738 | 97 | <- | Minus |
| 2R | 23511577..23512200 | 17..640 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:32 Download gff for
BO06095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19398910..19399008 | 641..738 | 97 | <- | Minus |
| arm_2R | 19399100..19399723 | 17..640 | 100 | | Minus |
BO06095.pep Sequence
Translation from 16 to 754
> BO06095.pep
MDAKTLILLTVAVAIFACHTIAQPHYIEVSEESEEWCPPENNNTDNNNPN
RTDHDSALCANFQHIRAMINQEALLNLIEVHYNCDLKFRRAMRYYNTAGF
ERTTQQLTDTDAYKTVLKELQSESVDTADIETVADIFHCIILPVRQPDRN
CDCKAVKHHTFVGDLLSIMPKQEVHNYVAQSQANHTNFGNFTKAVVSKQF
QATLKANINKRDVVKPLRTLRKNGWDIPELLRAMLTIFQWASFLDH
BO06095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3906-PA | 240 | CG3906-PA | 1..240 | 1..240 | 1275 | 100 | Plus |
