Clone Sequence Records
BO06117.3prime Sequence
872 bp (801 high quality bases) assembled on 2005-12-02
> BO06117.3prime
ATGGTCTAGAAAGCTTGCAAGAACCAACGATTTCGGAAACAATTGCTGCT
TCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGGA
TGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGAG
GTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTGT
TGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTTG
TCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCGA
CATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAAA
GATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTAG
ATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGCA
CACGTCCGATACGTGCACAGTATTCAAACGCATGGCATCGTTCCACAGCA
GCTTCATTGTCTCGTTCAGGTATTTGTATATGGCAGCGATTATAATGCGC
GGCATCAAATAGCGCTTATCGCCAATGCCATAGACCACGGGCAAACGGAC
GACCGTGTAACTGAGATCGTCGATGTTGGCCAGTTCCTTCTCCACCTTGA
GCTTCTGCTTGGCCACGCCCGTCCAGGGATCCGTCTTGCAGTCCTCTTTT
AACGGCGTCTTTTCGCTGCTGTTCACACAACCAGAGCTGAGTTCCACGTA
TCGTTTGACCCGCTGGTTAGCCGCCTCATTGGCGCAGTTCAAACTGAGCT
TCAGGATACCCTCCTTGTATACGGCATCATCCTGGTTGGGACGCGTCTCG
GCCGCACAATTGATGACNATGT
BO06117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 260..1113 | 872..19 | 4226 | 99.7 | Minus |
CG5854-PB | 990 | CG5854-RB | 134..987 | 872..19 | 4226 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 375..1228 | 872..19 | 4244 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934615..23934932 | 872..555 | 1564 | 99.4 | Minus |
3R | 32079331 | 3R | 23935029..23935297 | 554..286 | 1345 | 100 | Minus |
3R | 32079331 | 3R | 23935364..23935630 | 285..19 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:56:45 has no hits.
BO06117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:40:28 Download gff for
BO06117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 260..1116 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:09:41 Download gff for
BO06117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PB | 134..990 | 16..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:08 Download gff for
BO06117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 375..1228 | 19..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:54 Download gff for
BO06117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 375..1228 | 19..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:54 Download gff for
BO06117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23934615..23934932 | 555..872 | 99 | -> | Minus |
3R | 23935029..23935297 | 286..554 | 100 | -> | Minus |
3R | 23935364..23935630 | 19..285 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:08 Download gff for
BO06117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19760337..19760654 | 555..872 | 99 | -> | Minus |
arm_3R | 19760751..19761019 | 286..554 | 100 | -> | Minus |
arm_3R | 19761086..19761352 | 19..285 | 100 | | Minus |
BO06117.5prime Sequence
833 bp (721 high quality bases) assembled on 2005-12-02
> BO06117.5prime
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
NCACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCT
BO06117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 1116 | CG5854-RA | 1..817 | 17..833 | 4041 | 99.7 | Plus |
CG5854-PB | 990 | CG5854-RB | 1..691 | 143..833 | 3411 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 115..932 | 16..833 | 4064 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 224..593 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935268 | 594..833 | 1174 | 99.2 | Plus |
3R | 32079331 | 3R | 23934170..23934344 | 50..224 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:27:28 has no hits.
BO06117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:40:29 Download gff for
BO06117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:09:42 Download gff for
BO06117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:48 Download gff for
BO06117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 115..932 | 16..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:00 Download gff for
BO06117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 115..932 | 16..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:00 Download gff for
BO06117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23934171..23934344 | 51..224 | 100 | -> | Plus |
3R | 23934026..23934060 | 16..50 | 100 | -> | Plus |
3R | 23934564..23934932 | 225..593 | 100 | -> | Plus |
3R | 23935029..23935268 | 594..833 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:48 Download gff for
BO06117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19759748..19759782 | 16..50 | 100 | -> | Plus |
arm_3R | 19759893..19760066 | 51..224 | 100 | -> | Plus |
arm_3R | 19760286..19760654 | 225..593 | 100 | -> | Plus |
arm_3R | 19760751..19760990 | 594..833 | 99 | | Plus |
BO06117.complete Sequence
1147 bp (1147 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630290
> BO06117.complete
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
CAACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGTCG
AATTTGGCAAAACTTTATCCCACGGACACCGTCAGTGAAATCAACGACAA
GCACATGGCACCCTGGGCCGAGATTTGCCAGCGCAATGGCATCGACAACA
CCCCGCTGACACCGTACCTAGATGAGGAGCAGCTCCAGCACAAGCACCTC
TACTTGGATAACACGAAACTGAAAGACTTTGGCTACGTGCTGCAGCATCC
GAAAGTCACTCGCGAGCTGCTCATGGAGATGATTAACGACTATGTGAAGC
AGCAATTGTTTCCGAAATCGTTGGTTCTTGCAAGCTTTCTAGACCAT
BO06117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1116 | CG5854-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-RA | 1562 | CG5854-RA | 115..1228 | 16..1129 | 5570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23934563..23934932 | 224..593 | 1850 | 100 | Plus |
3R | 32079331 | 3R | 23935029..23935297 | 594..862 | 1345 | 100 | Plus |
3R | 32079331 | 3R | 23935364..23935630 | 863..1129 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 23934170..23934344 | 50..224 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:44:54 has no hits.
BO06117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:33 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 1..1116 | 17..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:41 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 112..1225 | 16..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:28 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 116..1228 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:33 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 112..1225 | 16..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:35 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5854-RA | 116..1228 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:35 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23935364..23935630 | 863..1131 | 99 | | Plus |
3R | 23934027..23934060 | 17..50 | 100 | -> | Plus |
3R | 23934171..23934344 | 51..224 | 100 | -> | Plus |
3R | 23934564..23934932 | 225..593 | 100 | -> | Plus |
3R | 23935029..23935297 | 594..862 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:28 Download gff for
BO06117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19759749..19759782 | 17..50 | 100 | -> | Plus |
arm_3R | 19759893..19760066 | 51..224 | 100 | -> | Plus |
arm_3R | 19760286..19760654 | 225..593 | 100 | -> | Plus |
arm_3R | 19760751..19761019 | 594..862 | 100 | -> | Plus |
arm_3R | 19761086..19761352 | 863..1131 | 99 | | Plus |
BO06117.pep Sequence
Translation from 16 to 1147
> BO06117.pep
MSEKPTVLILGGCGFIGRNLATYLLDNELAQEIRLADKTPPQMAWLNEEQ
TRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINCAAETRANQ
DDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKTPLKEDCKT
DPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYLMPRIIIAA
IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDD
SASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEINDKHMAPW
AEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVLQHPKVTRE
LLMEMINDYVKQQLFPKSLVLASFLDH
BO06117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5854-PA | 371 | CG5854-PA | 1..371 | 1..371 | 1944 | 100 | Plus |