Clone BO06117 Report

Search the DGRC for BO06117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:61
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5854-RA
Protein status:BO06117.pep: validated full length
Sequenced Size:1147

Clone Sequence Records

BO06117.3prime Sequence

872 bp (801 high quality bases) assembled on 2005-12-02

> BO06117.3prime
ATGGTCTAGAAAGCTTGCAAGAACCAACGATTTCGGAAACAATTGCTGCT
TCACATAGTCGTTAATCATCTCCATGAGCAGCTCGCGAGTGACTTTCGGA
TGCTGCAGCACGTAGCCAAAGTCTTTCAGTTTCGTGTTATCCAAGTAGAG
GTGCTTGTGCTGGAGCTGCTCCTCATCTAGGTACGGTGTCAGCGGGGTGT
TGTCGATGCCATTGCGCTGGCAAATCTCGGCCCAGGGTGCCATGTGCTTG
TCGTTGATTTCACTGACGGTGTCCGTGGGATAAAGTTTTGCCAAATTCGA
CATTACAAGGCCGAAGAAATCCAAATTGATGTCGAAAATATCCACTAAAA
GATTACTAATGGTGCCCTGCGTCGATGCTGAATCATCGCAGATGTTGTAG
ATCTGACCGGCGGTCTTGGGACTCTGAGCCAATTGCCAAACGGCAGCGCA
CACGTCCGATACGTGCACAGTATTCAAACGCATGGCATCGTTCCACAGCA
GCTTCATTGTCTCGTTCAGGTATTTGTATATGGCAGCGATTATAATGCGC
GGCATCAAATAGCGCTTATCGCCAATGCCATAGACCACGGGCAAACGGAC
GACCGTGTAACTGAGATCGTCGATGTTGGCCAGTTCCTTCTCCACCTTGA
GCTTCTGCTTGGCCACGCCCGTCCAGGGATCCGTCTTGCAGTCCTCTTTT
AACGGCGTCTTTTCGCTGCTGTTCACACAACCAGAGCTGAGTTCCACGTA
TCGTTTGACCCGCTGGTTAGCCGCCTCATTGGCGCAGTTCAAACTGAGCT
TCAGGATACCCTCCTTGTATACGGCATCATCCTGGTTGGGACGCGTCTCG
GCCGCACAATTGATGACNATGT

BO06117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 260..1113 872..19 4226 99.7 Minus
CG5854-PB 990 CG5854-RB 134..987 872..19 4226 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 375..1228 872..19 4244 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934615..23934932 872..555 1564 99.4 Minus
3R 32079331 3R 23935029..23935297 554..286 1345 100 Minus
3R 32079331 3R 23935364..23935630 285..19 1335 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:56:45 has no hits.

BO06117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:40:28 Download gff for BO06117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 260..1116 16..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:09:41 Download gff for BO06117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PB 134..990 16..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:08 Download gff for BO06117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 375..1228 19..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:54 Download gff for BO06117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 375..1228 19..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:54 Download gff for BO06117.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23934615..23934932 555..872 99 -> Minus
3R 23935029..23935297 286..554 100 -> Minus
3R 23935364..23935630 19..285 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:08 Download gff for BO06117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19760337..19760654 555..872 99 -> Minus
arm_3R 19760751..19761019 286..554 100 -> Minus
arm_3R 19761086..19761352 19..285 100   Minus

BO06117.5prime Sequence

833 bp (721 high quality bases) assembled on 2005-12-02

> BO06117.5prime
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
NCACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCT

BO06117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 1116 CG5854-RA 1..817 17..833 4041 99.7 Plus
CG5854-PB 990 CG5854-RB 1..691 143..833 3411 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 115..932 16..833 4064 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 224..593 1850 100 Plus
3R 32079331 3R 23935029..23935268 594..833 1174 99.2 Plus
3R 32079331 3R 23934170..23934344 50..224 875 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:27:28 has no hits.

BO06117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:40:29 Download gff for BO06117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:09:42 Download gff for BO06117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:40:48 Download gff for BO06117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 115..932 16..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:00 Download gff for BO06117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 115..932 16..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:00 Download gff for BO06117.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23934171..23934344 51..224 100 -> Plus
3R 23934026..23934060 16..50 100 -> Plus
3R 23934564..23934932 225..593 100 -> Plus
3R 23935029..23935268 594..833 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:40:48 Download gff for BO06117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759748..19759782 16..50 100 -> Plus
arm_3R 19759893..19760066 51..224 100 -> Plus
arm_3R 19760286..19760654 225..593 100 -> Plus
arm_3R 19760751..19760990 594..833 99   Plus

BO06117.complete Sequence

1147 bp (1147 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630290

> BO06117.complete
GAAGTTATCAGTCGACATGTCTGAAAAGCCGACTGTTCTGATTTTGGGTG
GCTGCGGCTTCATTGGACGCAACTTGGCCACTTATCTGCTGGACAATGAA
CTGGCGCAGGAAATACGACTGGCCGATAAGACCCCTCCGCAGATGGCATG
GCTAAACGAGGAGCAGACGCGGGTCTTCGAGAGCGATCGGGTGGAGTTCT
GCAGCGCGAACCTAATAAACGCCGCCTCATGCAAGGCGGCTTTTGCGCCA
CACCCCACCACTGGACGGGCCTGGGACATTGTCATCAATTGTGCGGCCGA
GACGCGTGCCAACCAGGATGATGCCGTATACAAGGAGGGTATCCTGAAGC
TCAGTTTGAACTGCGCCAATGAGGCGGCTAACCAGCGGGTCAAACGATAC
GTGGAACTCAGCTCTGGTTGTGTGAACAGCAGCGAAAAGACGCCGTTAAA
AGAGGACTGCAAGACGGATCCCTGGACGGGCGTGGCCAAGCAGAAGCTCA
AGGTGGAGAAGGAACTGGCCAACATCGACGATCTCAGTTACACGGTCGTC
CGTTTGCCCGTGGTCTATGGCATTGGCGATAAGCGCTATTTGATGCCGCG
CATTATAATCGCTGCCATATACAAATACCTGAACGAGACAATGAAGCTGC
TGTGGAACGATGCCATGCGTTTGAATACTGTGCACGTATCGGACGTGTGC
GCTGCCGTTTGGCAATTGGCTCAGAGTCCCAAGACCGCCGGTCAGATCTA
CAACATCTGCGATGATTCAGCATCGACGCAGGGCACCATTAGTAATCTTT
TAGTGGATATTTTCGACATCAATTTGGATTTCTTCGGCCTTGTAATGTCG
AATTTGGCAAAACTTTATCCCACGGACACCGTCAGTGAAATCAACGACAA
GCACATGGCACCCTGGGCCGAGATTTGCCAGCGCAATGGCATCGACAACA
CCCCGCTGACACCGTACCTAGATGAGGAGCAGCTCCAGCACAAGCACCTC
TACTTGGATAACACGAAACTGAAAGACTTTGGCTACGTGCTGCAGCATCC
GAAAGTCACTCGCGAGCTGCTCATGGAGATGATTAACGACTATGTGAAGC
AGCAATTGTTTCCGAAATCGTTGGTTCTTGCAAGCTTTCTAGACCAT

BO06117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1116 CG5854-PA 1..1113 17..1129 5565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-RA 1562 CG5854-RA 115..1228 16..1129 5570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23934563..23934932 224..593 1850 100 Plus
3R 32079331 3R 23935029..23935297 594..862 1345 100 Plus
3R 32079331 3R 23935364..23935630 863..1129 1335 100 Plus
3R 32079331 3R 23934170..23934344 50..224 875 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:44:54 has no hits.

BO06117.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:33 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 1..1116 17..1132 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:41 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 112..1225 16..1129 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:28 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 116..1228 17..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:33 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 112..1225 16..1129 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:35 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
CG5854-RA 116..1228 17..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:35 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23935364..23935630 863..1131 99   Plus
3R 23934027..23934060 17..50 100 -> Plus
3R 23934171..23934344 51..224 100 -> Plus
3R 23934564..23934932 225..593 100 -> Plus
3R 23935029..23935297 594..862 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:28 Download gff for BO06117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19759749..19759782 17..50 100 -> Plus
arm_3R 19759893..19760066 51..224 100 -> Plus
arm_3R 19760286..19760654 225..593 100 -> Plus
arm_3R 19760751..19761019 594..862 100 -> Plus
arm_3R 19761086..19761352 863..1131 99   Plus

BO06117.pep Sequence

Translation from 16 to 1147

> BO06117.pep
MSEKPTVLILGGCGFIGRNLATYLLDNELAQEIRLADKTPPQMAWLNEEQ
TRVFESDRVEFCSANLINAASCKAAFAPHPTTGRAWDIVINCAAETRANQ
DDAVYKEGILKLSLNCANEAANQRVKRYVELSSGCVNSSEKTPLKEDCKT
DPWTGVAKQKLKVEKELANIDDLSYTVVRLPVVYGIGDKRYLMPRIIIAA
IYKYLNETMKLLWNDAMRLNTVHVSDVCAAVWQLAQSPKTAGQIYNICDD
SASTQGTISNLLVDIFDINLDFFGLVMSNLAKLYPTDTVSEINDKHMAPW
AEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTKLKDFGYVLQHPKVTRE
LLMEMINDYVKQQLFPKSLVLASFLDH

BO06117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5854-PA 371 CG5854-PA 1..371 1..371 1944 100 Plus