Clone Sequence Records
BO06134.3prime Sequence
937 bp (775 high quality bases) assembled on 2005-12-02
> BO06134.3prime
ATGGTCTAGAAAGCTTGCTTTACTGTGGCTCTCTAGGTAAACTGTTGCAT
TGTCCACGCCCATAAACTGGTGTATACTCAGCGAGGACAGCATTTTCATC
TGGCCCTGGTACAGCACATCGGCGATGATCTTTTCCGCGTAGATAGCCTG
TGTTCCGTCCATGGAGCGAAGCTTGTGTGCGATAATTTTCCCGAAGTTGG
AGAAGTGGTCGTCCAGCTGGCTGTCCGCACTCTTTAGGGCCAGCGAAAAG
AGGCGCTCAAAGTCAATGGTGGAAATGTCCGCTCGGAATTTACCTGGAGG
CGGCTCGTTGTCCTCCGAAATCTGCGAAGAGACCGAGGAGGACCTTTTCC
GTGTTATGTGATTGGCTTTCTGGCTCGGGCTCTGATTACTGATCAGTTTC
GTTTGGTTCTGGGTGACGATGCGCTTGCACTGCGGCGATTCGGAGTCGCC
AGGCGGAGACTTTATGGAGTCGGGCACGGATTTTCTGCGGGCGGACAGCA
GCCTGTTGTTAGCAGGCACCACGATTTCGACCTCCTTGATAGTAGCGCCA
CTGGCATGGCTGTTGGCGTTGTTGACTGTTTTAATACTGATAACGGGGTC
AGCGGCAGCGGCGGCGGCGGCCTCCTCGAAGATGTTGGCACAGAATTCGT
TGGCGCTGTTGTTGGGTGACATCTTGATCGAGTCTGCCGTCGGCTTTGGG
GGCTTGTGCAGGCTCTCGGCGTCGGAATACTCGTCGCCGTTCTCTGGCGC
CCCTAGCTGCATGGAGTTGTCCAGGCAGACCGACTGCTCGCGCTTGAACT
TCTTGTCGGCGGGGATCTCCTCGTCCTTAAGGAACATCAGGGACTCGAAG
TAGCGGCGCTTGGGGCAGTAGGGCTCGTACTTCTCGCCCTTTTTCTTGAC
CTCGTTGTATTTCCTCAGCTGATGACGAAATGCACAG
BO06134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-PA | 1107 | CG3163-RA | 186..1104 | 937..19 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-RA | 1239 | CG3163-RA | 247..1165 | 937..19 | 4595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24029563..24030481 | 937..19 | 4595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:14:00 has no hits.
BO06134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:40:57 Download gff for
BO06134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-PA | 186..1107 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:10:24 Download gff for
BO06134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-PA | 186..1107 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:32 Download gff for
BO06134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 247..1165 | 19..937 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:08 Download gff for
BO06134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 247..1165 | 19..937 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:08 Download gff for
BO06134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24029563..24030481 | 19..937 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:32 Download gff for
BO06134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19917086..19918004 | 19..937 | 100 | | Minus |
BO06134.5prime Sequence
911 bp (766 high quality bases) assembled on 2005-12-02
> BO06134.5prime
GAAGTTATCAGTCGACATGGACTTTATCGACGACTTCATCGAAGAATACA
AAAGCAATCCGTGCTTGTGGAAGGCGGACTCGGCGGACTTCAGGAACCGC
AGCCGCCGGCAGGAGGCCTACGCGAAGCTCATCGAGGTGGCCACCAAGCA
CGGGGAGATGTACAATGTGGAGCGAACAAAGCAAAAGATAAACAATCTGC
GCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAG
GGCGAGAAGTACGAGCCCTACTGCCCCAAGCGCCGCTACTTCGAGTCCCT
GATGTTCCTTAAGGACGAGGAGATCCCCGCCGACAAGAAGTTCAAGCGCG
AGCAGTCGGTCTGCCTGGACAACTCCATGCAGCTAGGGGCGCCAGAGAAC
GGCGACGAGTATTCCGACGCCGAGAGCCTGCACAAGCCCCCAAAGCCGAC
GGCAGACTCGATCAAGATGTCACCCAACAACAGCGCCAACGAATTCTGTG
CCAACATCTTCGAGGAGGCCGCCGCCGCCGCTGCCGCTGACCCCGTTATC
AGTATTAAAACAGTCAACAACGCCAACAGCCATGCCAGTGGCGCTACTAT
CAAGGAGGTCGAAATCGTGGTGCCTGCTAACAACAGGCTGCTGTCCGCCC
GCAGAAAATCCGTGCCCGACTCCATAAAGTCTCCGCCTGGCGACTCCGAA
TCGCCGCAGTGCAAGCGCATCGTCACCCAGAACCAAACGAAACTGATCAG
TAATCAGAGCCCGAGCCAGAAAGCCAATCACATAACACGGAAAAGGTCCT
CCTCGGTCTCTTCGCAGATTTCGGAGGACAACGAGCCGCCTCCAGGTAAA
TTCCGAGCGGACATTTCCACCATTGACTTTGAGCGCCTCTTTTCGCTGGC
CCTAAAGAGTG
BO06134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-PA | 1107 | CG3163-RA | 1..895 | 17..911 | 4475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:02:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-RA | 1239 | CG3163-RA | 62..956 | 17..911 | 4475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24029378..24030272 | 17..911 | 4475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:02:43 has no hits.
BO06134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:40:58 Download gff for
BO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:10:25 Download gff for
BO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-PA | 1..895 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:36 Download gff for
BO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 62..956 | 17..911 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:44 Download gff for
BO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 62..956 | 17..911 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:44 Download gff for
BO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24029378..24030272 | 17..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:36 Download gff for
BO06134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19916901..19917795 | 17..911 | 100 | | Plus |
BO06134.complete Sequence
1138 bp (1138 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630293
> BO06134.complete
GAAGTTATCAGTCGACATGGACTTTATCGACGACTTCATCGAAGAATACA
AAAGCAATCCGTGCTTGTGGAAGGCGGACTCGGCGGACTTCAGGAACCGC
AGCCGCCGGCAGGAGGCCTACGCGAAGCTCATCGAGGTGGCCACCAAGCA
CGGGGAGATGTACAATGTGGAGCGAACAAAGCAAAAGATAAACAATCTGC
GCTGTGCATTTCGTCATCAGCTGAGGAAATACAACGAGGTCAAGAAAAAG
GGCGAGAAGTACGAGCCCTACTGCCCCAAGCGCCGCTACTTCGAGTCCCT
GATGTTCCTTAAGGACGAGGAGATCCCCGCCGACAAGAAGTTCAAGCGCG
AGCAGTCGGTCTGCCTGGACAACTCCATGCAGCTAGGGGCGCCAGAGAAC
GGCGACGAGTATTCCGACGCCGAGAGCCTGCACAAGCCCCCAAAGCCGAC
GGCAGACTCGATCAAGATGTCACCCAACAACAGCGCCAACGAATTCTGTG
CCAACATCTTCGAGGAGGCCGCCGCCGCCGCTGCCGCTGACCCCGTTATC
AGTATTAAAACAGTCAACAACGCCAACAGCCATGCCAGTGGCGCTACTAT
CAAGGAGGTCGAAATCGTGGTGCCTGCTAACAACAGGCTGCTGTCCGCCC
GCAGAAAATCCGTGCCCGACTCCATAAAGTCTCCGCCTGGCGACTCCGAA
TCGCCGCAGTGCAAGCGCATCGTCACCCAGAACCAAACGAAACTGATCAG
TAATCAGAGCCCGAGCCAGAAAGCCAATCACATAACACGGAAAAGGTCCT
CCTCGGTCTCTTCGCAGATTTCGGAGGACAACGAGCCGCCTCCAGGTAAA
TTCCGAGCGGACATTTCCACCATTGACTTTGAGCGCCTCTTTTCGCTGGC
CCTAAAGAGTGCGGACAGCCAGCTGGACGACCACTTCTCCAACTTCGGGA
AAATTATCGCACACAAGCTTCGCTCCATGGACGGAACACAGGCTATCTAC
GCGGAAAAGATCATCGCCGATGTGCTGTACCAGGGCCAGATGAAAATGCT
GTCCTCGCTGAGTATACACCAGTTTATGGGCGTGGACAATGCAACAGTTT
ACCTAGAGAGCCACAGTAAAGCAAGCTTTCTAGACCAT
BO06134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:57:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-RA | 1107 | CG3163-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-RA | 1239 | CG3163-RA | 62..1165 | 17..1120 | 5520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24029378..24030481 | 17..1120 | 5520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:57:21 has no hits.
BO06134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:29 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 1..1107 | 17..1123 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:37 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 58..1161 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:59 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 62..1165 | 17..1122 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:29 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 58..1161 | 17..1120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:54 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3163-RA | 62..1165 | 17..1122 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:54 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24029378..24030481 | 17..1122 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:59 Download gff for
BO06134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19916901..19918004 | 17..1122 | 99 | | Plus |
BO06134.pep Sequence
Translation from 16 to 1138
> BO06134.pep
MDFIDDFIEEYKSNPCLWKADSADFRNRSRRQEAYAKLIEVATKHGEMYN
VERTKQKINNLRCAFRHQLRKYNEVKKKGEKYEPYCPKRRYFESLMFLKD
EEIPADKKFKREQSVCLDNSMQLGAPENGDEYSDAESLHKPPKPTADSIK
MSPNNSANEFCANIFEEAAAAAAADPVISIKTVNNANSHASGATIKEVEI
VVPANNRLLSARRKSVPDSIKSPPGDSESPQCKRIVTQNQTKLISNQSPS
QKANHITRKRSSSVSSQISEDNEPPPGKFRADISTIDFERLFSLALKSAD
SQLDDHFSNFGKIIAHKLRSMDGTQAIYAEKIIADVLYQGQMKMLSSLSI
HQFMGVDNATVYLESHSKASFLDH
BO06134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3163-PA | 368 | CG3163-PA | 1..368 | 1..368 | 1896 | 100 | Plus |
| CG5180-PC | 355 | CG5180-PC | 12..350 | 3..351 | 215 | 22.9 | Plus |
| CG5180-PB | 355 | CG5180-PB | 12..350 | 3..351 | 215 | 22.9 | Plus |
| CG8281-PA | 348 | CG8281-PA | 22..198 | 3..159 | 152 | 25.6 | Plus |
