Clone Sequence Records
BO06137.3prime Sequence
836 bp (785 high quality bases) assembled on 2005-12-02
> BO06137.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGGTGGTGGGTGAGTGGACTTTGCCGG
CAAACAGTATGTTACCAGTGGACTCCTCCTCGATAAAGAACACAAACGGC
CGGTTTACGTTGAATTCCTCGATGGCGGTGCTGCCACCGAACTTGTTTTC
GATCTCCACAACGGTGGCTGCGTAGGCCTCCGTTCCCTTCTCGTTCACAT
TAATGCCGGCCTTCTGCAGGATGTTAGACACCTTTACTTTGCCGGCGACA
TCAGCGCCGCGGGTTAATCCCGGCAGCGAGGCGCTGTCCTCAAAGATTTC
GCGCACACCCAGGCTGCGCAACGTCTCCTTAAGGTTCTGCTGGTAGTCGA
AATGGAACTTGGGCAGCGTCACCTTCACTTTCACCTCCTCCATGGCCCAC
TGAGCGCTCTTTAGCTCGTCGTTTTCCAGGTTCTTGACCAAGTCATGGAT
GCCATTCAGGGCGTAGGGCAGCAGGACGAACAGGGAGTTCTTGCCCTTGT
AGGGCAGACGCAGAATCTGCGCCTTCAGCTTCTCCGAGGTGGTGTAGTAG
AAGTAGTCGGTCTGCTCCATGAACTCCGCCCGCGACTGGTCGTCCTTGCT
GCGGAAGAAGGATCCCTGGAATGTGGTGGCAAACTGCCGCCGCCACAGAC
CGTTGAAGTAGATCAGATTGGTCAGCAACATTACGCTGCTGCGCACGTTG
TCCGGGGCTACTAGCTGCTGAAGTCTGCCCTGCGTGATGTTGGCGGCCCA
GGCGTTGATGGCATCTGCCGCCGCCTCGGGATTGGTGAAGTCTAGCGCCT
CCACCTCGCTGTCGTAGAAGTGTTTCAGCGTGGCCG
BO06137.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11331-PA | 1344 | Spn27A-RA | 524..1341 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn27A-RB | 2283 | CG11331-RB | 696..1513 | 836..19 | 4090 | 100 | Minus |
Spn27A-RA | 1569 | CG11331-RA | 696..1513 | 836..19 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:59:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6671835..6672652 | 19..836 | 4090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:59:15 has no hits.
BO06137.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:02 Download gff for
BO06137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11331-PA | 524..1344 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:10:32 Download gff for
BO06137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11331-PA | 524..1344 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:41 Download gff for
BO06137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 696..1522 | 8..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:33 Download gff for
BO06137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 696..1522 | 8..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:33 Download gff for
BO06137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6671826..6672652 | 8..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:41 Download gff for
BO06137.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6671826..6672652 | 8..836 | 99 | | Plus |
BO06137.5prime Sequence
850 bp (756 high quality bases) assembled on 2005-12-02
> BO06137.5prime
GAAGTTATCAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGC
TGCTGTCGCTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATA
CCGACGACCACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCT
GCCCGGTGGCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATA
TAGATACCTTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGG
CATCTACTGAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGAT
CATCTCGCCGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGG
CCGGAGCCGGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGAC
ATTCGATCGCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTC
CTTCAAGAAGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGC
TCTTCACGGACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTG
AAACACTTCTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGA
GGCGGCGGCAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCA
GACTTCAGCAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTG
CTGACCAATCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCAC
CACATTCCAGGGATCCTTCTTCCGCAGCAAGGACGACCAGTCGCGGGCGG
AGTTCATGGAGCAGACCGACTACTTCTACTACACCACCTCGGAGAAGCTG
BO06137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11331-PA | 1344 | Spn27A-RA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn27A-RB | 2283 | CG11331-RB | 173..1006 | 17..850 | 4170 | 100 | Plus |
Spn27A-RA | 1569 | CG11331-RA | 173..1006 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6672342..6673175 | 850..17 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:03:09 has no hits.
BO06137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:03 Download gff for
BO06137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11331-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:10:33 Download gff for
BO06137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11331-PA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:52 Download gff for
BO06137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 168..1006 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:19 Download gff for
BO06137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 168..1006 | 9..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:19 Download gff for
BO06137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6672342..6673180 | 9..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:52 Download gff for
BO06137.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6672342..6673180 | 9..850 | 99 | | Minus |
BO06137.complete Sequence
1375 bp (1375 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630294
> BO06137.complete
GAAGTTATCAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGC
TGCTGTCGCTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATA
CCGACGACCACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCT
GCCCGGTGGCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATA
TAGATACCTTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGG
CATCTACTGAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGAT
CATCTCGCCGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGG
CCGGAGCCGGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGAC
ATTCGATCGCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTC
CTTCAAGAAGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGC
TCTTCACGGACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTG
AAACACTTCTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGA
GGCGGCGGCAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCA
GACTTCAGCAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTG
CTGACCAATCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCAC
CACATTCCAGGGATCCTTCTTCCGCAGCAAGGACGACCAGTCGCGGGCGG
AGTTCATGGAGCAGACCGACTACTTCTACTACACCACCTCGGAGAAGCTG
AAGGCGCAGATTCTGCGTCTGCCCTACAAGGGCAAGAACTCCCTGTTCGT
CCTGCTGCCCTACGCCCTGAATGGCATCCATGACTTGGTCAAGAACCTGG
AAAACGACGAGCTAAAGAGCGCTCAGTGGGCCATGGAGGAGGTGAAAGTG
AAGGTGACGCTGCCCAAGTTCCATTTCGACTACCAGCAGAACCTTAAGGA
GACGTTGCGCAGCCTGGGTGTGCGCGAAATCTTTGAGGACAGCGCCTCGC
TGCCGGGATTAACCCGCGGCGCTGATGTCGCCGGCAAAGTAAAGGTGTCT
AACATCCTGCAGAAGGCCGGCATTAATGTGAACGAGAAGGGAACGGAGGC
CTACGCAGCCACCGTTGTGGAGATCGAAAACAAGTTCGGTGGCAGCACCG
CCATCGAGGAATTCAACGTAAACCGGCCGTTTGTGTTCTTTATCGAGGAG
GAGTCCACTGGTAACATACTGTTTGCCGGCAAAGTCCACTCACCCACCAC
CCAGAACGCAAGCTTTCTAGACCAT
BO06137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn27A-RB | 1344 | CG11331-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Spn27A-RA | 1344 | CG11331-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn27A-RB | 2283 | CG11331-RB | 173..1513 | 17..1357 | 6705 | 100 | Plus |
Spn27A-RA | 1569 | CG11331-RA | 173..1513 | 17..1357 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6671835..6673175 | 1357..17 | 6705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:10:27 has no hits.
BO06137.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:16 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 1..1344 | 17..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:17 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 165..1519 | 9..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:53 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 173..1513 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:16 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 165..1519 | 9..1368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:43 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn27A-RA | 173..1513 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:43 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6671833..6673175 | 17..1359 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:53 Download gff for
BO06137.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6671833..6673175 | 17..1359 | 99 | | Minus |
BO06137.pep Sequence
Translation from 16 to 1375
> BO06137.pep
MTKMGGNLAVMLLSLFLSALATGNGNSIPTTTTPQGVFETRTDKLPGGAA
SVPSGAGIYDDIDTFVPFRSDSHDPFSWHLLKTVLQNETADKNVIISPFS
VKLVLALLAEAAGAGTQTQVELANTQTDIRSQNNVREFYRKTLNSFKKEN
QLHETLSVRTKLFTDSFIETQQKFTATLKHFYDSEVEALDFTNPEAAADA
INAWAANITQGRLQQLVAPDNVRSSVMLLTNLIYFNGLWRRQFATTFQGS
FFRSKDDQSRAEFMEQTDYFYYTTSEKLKAQILRLPYKGKNSLFVLLPYA
LNGIHDLVKNLENDELKSAQWAMEEVKVKVTLPKFHFDYQQNLKETLRSL
GVREIFEDSASLPGLTRGADVAGKVKVSNILQKAGINVNEKGTEAYAATV
VEIENKFGGSTAIEEFNVNRPFVFFIEEESTGNILFAGKVHSPTTQNASF
LDH
BO06137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn27A-PB | 447 | CG11331-PB | 1..447 | 1..447 | 2276 | 100 | Plus |
Spn27A-PA | 447 | CG11331-PA | 1..447 | 1..447 | 2276 | 100 | Plus |
Spn55B-PA | 374 | CG10913-PA | 30..368 | 92..438 | 409 | 32.4 | Plus |
Spn42Dd-PB | 372 | CG9456-PB | 24..372 | 84..443 | 389 | 29.7 | Plus |
Spn38F-PA | 372 | CG9334-PA | 21..370 | 81..443 | 389 | 29.2 | Plus |