Clone BO06137 Report

Search the DGRC for BO06137

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:61
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptSpn27A-RA
Protein status:BO06137.pep: validated full length
Sequenced Size:1375

Clone Sequence Records

BO06137.3prime Sequence

836 bp (785 high quality bases) assembled on 2005-12-02

> BO06137.3prime
ATGGTCTAGAAAGCTTGCGTTCTGGGTGGTGGGTGAGTGGACTTTGCCGG
CAAACAGTATGTTACCAGTGGACTCCTCCTCGATAAAGAACACAAACGGC
CGGTTTACGTTGAATTCCTCGATGGCGGTGCTGCCACCGAACTTGTTTTC
GATCTCCACAACGGTGGCTGCGTAGGCCTCCGTTCCCTTCTCGTTCACAT
TAATGCCGGCCTTCTGCAGGATGTTAGACACCTTTACTTTGCCGGCGACA
TCAGCGCCGCGGGTTAATCCCGGCAGCGAGGCGCTGTCCTCAAAGATTTC
GCGCACACCCAGGCTGCGCAACGTCTCCTTAAGGTTCTGCTGGTAGTCGA
AATGGAACTTGGGCAGCGTCACCTTCACTTTCACCTCCTCCATGGCCCAC
TGAGCGCTCTTTAGCTCGTCGTTTTCCAGGTTCTTGACCAAGTCATGGAT
GCCATTCAGGGCGTAGGGCAGCAGGACGAACAGGGAGTTCTTGCCCTTGT
AGGGCAGACGCAGAATCTGCGCCTTCAGCTTCTCCGAGGTGGTGTAGTAG
AAGTAGTCGGTCTGCTCCATGAACTCCGCCCGCGACTGGTCGTCCTTGCT
GCGGAAGAAGGATCCCTGGAATGTGGTGGCAAACTGCCGCCGCCACAGAC
CGTTGAAGTAGATCAGATTGGTCAGCAACATTACGCTGCTGCGCACGTTG
TCCGGGGCTACTAGCTGCTGAAGTCTGCCCTGCGTGATGTTGGCGGCCCA
GGCGTTGATGGCATCTGCCGCCGCCTCGGGATTGGTGAAGTCTAGCGCCT
CCACCTCGCTGTCGTAGAAGTGTTTCAGCGTGGCCG

BO06137.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11331-PA 1344 Spn27A-RA 524..1341 836..19 4090 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-RB 2283 CG11331-RB 696..1513 836..19 4090 100 Minus
Spn27A-RA 1569 CG11331-RA 696..1513 836..19 4090 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6671835..6672652 19..836 4090 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:59:15 has no hits.

BO06137.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:02 Download gff for BO06137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11331-PA 524..1344 15..836 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:10:32 Download gff for BO06137.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11331-PA 524..1344 15..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:41 Download gff for BO06137.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 696..1522 8..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:33 Download gff for BO06137.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 696..1522 8..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:33 Download gff for BO06137.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6671826..6672652 8..836 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:41 Download gff for BO06137.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6671826..6672652 8..836 99   Plus

BO06137.5prime Sequence

850 bp (756 high quality bases) assembled on 2005-12-02

> BO06137.5prime
GAAGTTATCAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGC
TGCTGTCGCTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATA
CCGACGACCACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCT
GCCCGGTGGCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATA
TAGATACCTTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGG
CATCTACTGAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGAT
CATCTCGCCGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGG
CCGGAGCCGGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGAC
ATTCGATCGCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTC
CTTCAAGAAGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGC
TCTTCACGGACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTG
AAACACTTCTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGA
GGCGGCGGCAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCA
GACTTCAGCAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTG
CTGACCAATCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCAC
CACATTCCAGGGATCCTTCTTCCGCAGCAAGGACGACCAGTCGCGGGCGG
AGTTCATGGAGCAGACCGACTACTTCTACTACACCACCTCGGAGAAGCTG

BO06137.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11331-PA 1344 Spn27A-RA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-RB 2283 CG11331-RB 173..1006 17..850 4170 100 Plus
Spn27A-RA 1569 CG11331-RA 173..1006 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6672342..6673175 850..17 4170 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:03:09 has no hits.

BO06137.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:03 Download gff for BO06137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11331-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:10:33 Download gff for BO06137.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11331-PA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:58:52 Download gff for BO06137.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 168..1006 9..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:13:19 Download gff for BO06137.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 168..1006 9..850 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:13:19 Download gff for BO06137.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6672342..6673180 9..850 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:58:52 Download gff for BO06137.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6672342..6673180 9..850 99   Minus

BO06137.complete Sequence

1375 bp (1375 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630294

> BO06137.complete
GAAGTTATCAGTCGACATGACAAAGATGGGCGGAAATTTGGCAGTGATGC
TGCTGTCGCTGTTTTTGAGTGCGTTAGCCACGGGCAACGGCAACTCCATA
CCGACGACCACGACGCCCCAGGGCGTATTCGAAACCCGTACGGACAAGCT
GCCCGGTGGCGCTGCCAGCGTGCCCAGTGGAGCGGGTATCTACGACGATA
TAGATACCTTTGTGCCCTTCCGGAGCGACTCGCACGATCCGTTCTCATGG
CATCTACTGAAGACGGTGCTGCAGAACGAGACAGCCGACAAGAATGTGAT
CATCTCGCCGTTCTCCGTCAAACTGGTGCTGGCCCTGCTGGCTGAGGCGG
CCGGAGCCGGAACCCAGACGCAAGTGGAGCTGGCCAACACGCAAACAGAC
ATTCGATCGCAAAATAATGTGCGGGAGTTCTACCGCAAGACACTTAATTC
CTTCAAGAAGGAGAACCAGCTCCACGAGACGCTCAGTGTGCGCACCAAGC
TCTTCACGGACAGCTTCATCGAGACACAGCAGAAGTTCACGGCCACGCTG
AAACACTTCTACGACAGCGAGGTGGAGGCGCTAGACTTCACCAATCCCGA
GGCGGCGGCAGATGCCATCAACGCCTGGGCCGCCAACATCACGCAGGGCA
GACTTCAGCAGCTAGTAGCCCCGGACAACGTGCGCAGCAGCGTAATGTTG
CTGACCAATCTGATCTACTTCAACGGTCTGTGGCGGCGGCAGTTTGCCAC
CACATTCCAGGGATCCTTCTTCCGCAGCAAGGACGACCAGTCGCGGGCGG
AGTTCATGGAGCAGACCGACTACTTCTACTACACCACCTCGGAGAAGCTG
AAGGCGCAGATTCTGCGTCTGCCCTACAAGGGCAAGAACTCCCTGTTCGT
CCTGCTGCCCTACGCCCTGAATGGCATCCATGACTTGGTCAAGAACCTGG
AAAACGACGAGCTAAAGAGCGCTCAGTGGGCCATGGAGGAGGTGAAAGTG
AAGGTGACGCTGCCCAAGTTCCATTTCGACTACCAGCAGAACCTTAAGGA
GACGTTGCGCAGCCTGGGTGTGCGCGAAATCTTTGAGGACAGCGCCTCGC
TGCCGGGATTAACCCGCGGCGCTGATGTCGCCGGCAAAGTAAAGGTGTCT
AACATCCTGCAGAAGGCCGGCATTAATGTGAACGAGAAGGGAACGGAGGC
CTACGCAGCCACCGTTGTGGAGATCGAAAACAAGTTCGGTGGCAGCACCG
CCATCGAGGAATTCAACGTAAACCGGCCGTTTGTGTTCTTTATCGAGGAG
GAGTCCACTGGTAACATACTGTTTGCCGGCAAAGTCCACTCACCCACCAC
CCAGAACGCAAGCTTTCTAGACCAT

BO06137.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-RB 1344 CG11331-PB 1..1341 17..1357 6705 100 Plus
Spn27A-RA 1344 CG11331-PA 1..1341 17..1357 6705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-RB 2283 CG11331-RB 173..1513 17..1357 6705 100 Plus
Spn27A-RA 1569 CG11331-RA 173..1513 17..1357 6705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6671835..6673175 1357..17 6705 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:10:27 has no hits.

BO06137.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:16 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 1..1344 17..1361 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:17 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 165..1519 9..1368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:46:53 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 173..1513 17..1359 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:16 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 165..1519 9..1368 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:43 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
Spn27A-RA 173..1513 17..1359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:43 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6671833..6673175 17..1359 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:46:53 Download gff for BO06137.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6671833..6673175 17..1359 99   Minus

BO06137.pep Sequence

Translation from 16 to 1375

> BO06137.pep
MTKMGGNLAVMLLSLFLSALATGNGNSIPTTTTPQGVFETRTDKLPGGAA
SVPSGAGIYDDIDTFVPFRSDSHDPFSWHLLKTVLQNETADKNVIISPFS
VKLVLALLAEAAGAGTQTQVELANTQTDIRSQNNVREFYRKTLNSFKKEN
QLHETLSVRTKLFTDSFIETQQKFTATLKHFYDSEVEALDFTNPEAAADA
INAWAANITQGRLQQLVAPDNVRSSVMLLTNLIYFNGLWRRQFATTFQGS
FFRSKDDQSRAEFMEQTDYFYYTTSEKLKAQILRLPYKGKNSLFVLLPYA
LNGIHDLVKNLENDELKSAQWAMEEVKVKVTLPKFHFDYQQNLKETLRSL
GVREIFEDSASLPGLTRGADVAGKVKVSNILQKAGINVNEKGTEAYAATV
VEIENKFGGSTAIEEFNVNRPFVFFIEEESTGNILFAGKVHSPTTQNASF
LDH

BO06137.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
Spn27A-PB 447 CG11331-PB 1..447 1..447 2276 100 Plus
Spn27A-PA 447 CG11331-PA 1..447 1..447 2276 100 Plus
Spn55B-PA 374 CG10913-PA 30..368 92..438 409 32.4 Plus
Spn42Dd-PB 372 CG9456-PB 24..372 84..443 389 29.7 Plus
Spn38F-PA 372 CG9334-PA 21..370 81..443 389 29.2 Plus