Clone Sequence Records
BO06154.3prime Sequence
872 bp (755 high quality bases) assembled on 2005-12-02
> BO06154.3prime
ATGGTCTAGAAAGCTTGCCGAGGCAGTCGGCACAGGATTGAAGTAATGCA
GGCCATTGGTCGCCATGTCGTACTCGGTGATGTAGGCGGGAATTTCCAGC
TGATCCTTGGTGATGGCCGAGTACAGGTGCTCCACACCCGGAAGCGAGTG
CACCTTGGCCTTGATGGCAGGCGCCATGAACGTGGTGAACCACCAGGTCA
TCATCTTAGTCCAGAAAGTGGGGTGCACGATATAGAAGGCCTTCAGGTTC
TTCTTGTATTTGTAAGGCAACACACTGTAGACCTCACGCAGCCAGTGCAG
CGATGGATAGTTGTTCGTGGATGTCAGCGTGTGGAAGTACGAGATGACAT
AGTCTCCTTTAACGATGGGATCCAGTAGCTTAATCAGATATAGCAAGGCC
TTTTCCAGGTCAATGTTCTGGGCGGGGAACCATTTGCCGCAGAACACAAT
CACAGGCCGACCCAGGCGGTCCACGCCGCTCTGGTAAAGGCAGCCGATGC
CGGACACCTCCGTCAAATCCTCGACTTGGGCACGACGCAGTAGGCGCTCG
TATCTTTCCTGATGCTCAATGCCCTCGACTCCCTCGGAAATGACATTCTC
GTAAACTCCGGTGCGTGGTCGATCACTGAGCAGGTGCTGCCGGTCCAGAT
CGCGCTGAAGCTGAGCCTGCAATCCGCTGCTGTACGAATTCAGGCTGAGA
CCGTTCATATCCCGAGCTCCGTACTCCAGATCCGAACTATTGCCCTCCAT
GTCGTGTGGACTCACGTCTGAATCGTCGTCGGCTAAATGATGACGCATGT
GGACACTGTGCTGCGGATTGCGGATGATGCGTATCTGGCGATCGGGATCC
GGATGTTGCGGCTCCCCGAACT
BO06154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-PC | 1623 | CG18812-RC | 767..1620 | 872..19 | 4270 | 100 | Minus |
CG18812-PB | 735 | CG18812-RB | 1..732 | 750..19 | 3660 | 100 | Minus |
CG18812-PA | 654 | CG18812-RA | 110..651 | 560..19 | 2710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 2689 | CG18812-RC | 1017..1870 | 872..19 | 4270 | 100 | Minus |
CG18812-RF | 2894 | CG18812-RF | 1240..2075 | 872..19 | 3990 | 97.9 | Minus |
CG18812-RD | 1719 | CG18812-RD | 137..900 | 782..19 | 3820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7719376..7719574 | 61..259 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7719842..7719998 | 399..555 | 785 | 100 | Plus |
2R | 25286936 | 2R | 7719641..7719782 | 260..401 | 710 | 100 | Plus |
2R | 25286936 | 2R | 7725868..7725997 | 655..784 | 650 | 100 | Plus |
2R | 25286936 | 2R | 7725689..7725792 | 554..657 | 520 | 100 | Plus |
2R | 25286936 | 2R | 7727942..7728031 | 783..872 | 450 | 100 | Plus |
2R | 25286936 | 2R | 7719265..7719307 | 19..61 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:29:34 has no hits.
BO06154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:31 Download gff for
BO06154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 767..1623 | 18..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:13 Download gff for
BO06154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 767..1623 | 18..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:01 Download gff for
BO06154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 1017..1870 | 19..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:06 Download gff for
BO06154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 1017..1870 | 19..872 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:06 Download gff for
BO06154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7719641..7719780 | 260..399 | 100 | <- | Plus |
2R | 7719843..7719996 | 400..553 | 100 | <- | Plus |
2R | 7725689..7725789 | 554..654 | 100 | <- | Plus |
2R | 7725868..7725995 | 655..782 | 100 | <- | Plus |
2R | 7727942..7728031 | 783..872 | 100 | | Plus |
2R | 7719265..7719306 | 19..60 | 100 | <- | Plus |
2R | 7719376..7719574 | 61..259 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:01 Download gff for
BO06154.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3606770..3606811 | 19..60 | 100 | <- | Plus |
arm_2R | 3606881..3607079 | 61..259 | 100 | <- | Plus |
arm_2R | 3607146..3607285 | 260..399 | 100 | <- | Plus |
arm_2R | 3607348..3607501 | 400..553 | 100 | <- | Plus |
arm_2R | 3613194..3613294 | 554..654 | 100 | <- | Plus |
arm_2R | 3613373..3613500 | 655..782 | 100 | <- | Plus |
arm_2R | 3615447..3615536 | 783..872 | 100 | | Plus |
BO06154.5prime Sequence
721 bp (720 high quality bases) assembled on 2005-12-02
> BO06154.5prime
GAAGTTATCAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCA
AAGCATTCGAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTG
GCCACCTGGGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGA
CTACTCCAATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCT
GCAAAGATGTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACT
CTGGAGGTGGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAG
CAATAGCATATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCG
AGGAGCTGAGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATC
ACGCGTGGATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACC
TGCCTACAGGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCT
GCTACAGAAATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATC
GCCCTGTGCAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGC
AGCCCACATTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCC
TGCAGGTTGTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAG
GTCCTGGCCCCACTGTACTTC
BO06154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:35:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-PC | 1623 | CG18812-RC | 1..705 | 17..721 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RF | 2894 | CG18812-RF | 474..1178 | 17..721 | 3525 | 100 | Plus |
CG18812-RC | 2689 | CG18812-RC | 251..955 | 17..721 | 3525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7729429..7729581 | 232..80 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7729016..7729163 | 374..227 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 7728825..7728959 | 507..373 | 675 | 100 | Minus |
2R | 25286936 | 2R | 7728267..7728381 | 619..505 | 575 | 100 | Minus |
2R | 25286936 | 2R | 7728093..7728196 | 721..618 | 520 | 100 | Minus |
2R | 25286936 | 2R | 7729642..7729704 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:14:45 has no hits.
BO06154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:33 Download gff for
BO06154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:15 Download gff for
BO06154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-PC | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:35 Download gff for
BO06154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 247..955 | 10..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:14 Download gff for
BO06154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 247..955 | 10..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:14 Download gff for
BO06154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7728269..7728378 | 508..617 | 100 | <- | Minus |
2R | 7728825..7728957 | 375..507 | 100 | <- | Minus |
2R | 7729016..7729158 | 232..374 | 100 | <- | Minus |
2R | 7729430..7729581 | 80..231 | 100 | <- | Minus |
2R | 7729642..7729715 | 4..79 | 93 | | Minus |
2R | 7728093..7728196 | 618..721 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:35 Download gff for
BO06154.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3615774..3615883 | 508..617 | 100 | <- | Minus |
arm_2R | 3616330..3616462 | 375..507 | 100 | <- | Minus |
arm_2R | 3616521..3616663 | 232..374 | 100 | <- | Minus |
arm_2R | 3615598..3615701 | 618..721 | 100 | <- | Minus |
arm_2R | 3616935..3617086 | 80..231 | 100 | <- | Minus |
arm_2R | 3617147..3617220 | 4..79 | 93 | | Minus |
BO06154.complete Sequence
1654 bp assembled on 2006-12-18
GenBank Submission: FJ630295
> BO06154.complete
GAAGTTATCAGTCGACATGCGTCTCGACACGAACTCAAATGTGGACTTCA
AAGCATTCGAATCCAGCTCAAGCTCATGTCCTGTCAAATTGGATAACCTG
GCCACCTGGGGTGGCTCACAGAAAACAGACACACGACTGCCGATCACGGA
CTACTCCAATCTGGGCGGACCCCGGCACAATCGCAGTCCCTTTCCACTCT
GCAAAGATGTCAACAATCGCTTCGTAATCTGGGATGGGGACATGACCACT
CTGGAGGTGGACGCCATCACAAACACCAGCGATGAGACTCTGACTGAAAG
CAATAGCATATCGGAGCGCATCTTCGCAGTGGCTGGTAATCAGCTGCGCG
AGGAGCTGAGCACAACGGTTAAAGAATGCCGCACTGGCGATGTGCGCATC
ACGCGTGGATACAATCTGCCCGCCAAGTACGTGCTGCATACAGTGGCACC
TGCCTACAGGGAAAAGTTCAAGACGGCTGCCGAGAATACGCTGCACTGCT
GCTACAGAAATGTCCTGTGCAAGGCGAAGGAACTTAACCTGCACACCATC
GCCCTGTGCAACATCAGTGCCCACCAGAAGAGCTTTCCCGCGGATGTGGC
AGCCCACATTGCCCTGCGTACCATTCGTCGCTATCTGGACAAGTGCACCC
TGCAGGTTGTGATATTGTGCGTGGGCAGCAGCGAGCGCGGCACTTACGAG
GTCCTGGCCCCACTGTACTTCCCCAGGGATCAGCTGGAGGAGCGCAGTGC
CCTGTGGCAGCTGCCCAAGGACATTGGCGGCGAGTTCGGGGAGCCGCAAC
ATCCGGATCCCGATCGCCAGATACGCATCATCCGCAATCCGCAGCACAGT
GTCCACATGCGTCATCATTTAGCCGACGACGATTCAGACGTGAGTCCACA
CGACATGGAGGGCAATAGTTCGGATCTGGAGTACGGAGCTCGGGATATGA
ACGGTCTCAGCCTGAATTCGTACAGCAGCGGATTGCAGGCTCAGCTTCAG
CGCGATCTGGACCGGCAGCACCTGCTCAGTGATCGACCACGCACCGGAGT
TTACGAGAATGTCATTTCCGAGGGAGTCGAGGGCATTGAGCATCAGGAAA
GATACGAGCGCCTACTGCGTCGTGCCCAAGTCGAGGATTTGACGGAGGTG
TCCGGCATCGGCTGCCTTTACCAGAGCGGCGTGGACCGCCTGGGTCGGCC
TGTGATTGTGTTCTGCGGCAAATGGTTCCCCGCCCAGAACATTGACCTGG
AAAAGGCCTTGCTATATCTGATTAAGCTACTGGATCCCATCGTTAAAGGA
GACTATGTCATCTCGTACTTCCACACGCTGACATCCACGAACAACTATCC
ATCGCTGCACTGGCTGCGTGAGGTCTACAGTGTGTTGCCTTACAAATACA
AGAAGAACCTGAAGGCCTTCTATATCGTGCACCCCACTTTCTGGACTAAG
ATGATGACCTGGTGGTTCACCACGTTCATGGCGCCTGCCATCAAGGCCAA
GGTGCACTCGCTTCCGGGTGTGGAGCACCTGTACTCGGCCATCACCAAGG
ATCAGCTGGAAATTCCCGCCTACATCACCGAGTACGACATGGCGACCAAT
GGCCTGCATTACTTCAATCCTGTGCCGACTGCCTCGGCAAGCTTTCTAGA
CCAT
BO06154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 1623 | CG18812-PC | 1..1620 | 17..1636 | 8100 | 100 | Plus |
CG18812-RF | 1605 | CG18812-PF | 1..1602 | 17..1636 | 7795 | 98.9 | Plus |
CG18812-RD | 795 | CG18812-PD | 29..792 | 873..1636 | 3820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-RC | 2689 | CG18812-RC | 251..1870 | 17..1636 | 8100 | 100 | Plus |
CG18812-RF | 2894 | CG18812-RF | 474..2075 | 17..1636 | 7795 | 98.9 | Plus |
CG18812-RD | 1719 | CG18812-RD | 137..900 | 873..1636 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7727942..7728196 | 872..618 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 7719376..7719574 | 1594..1396 | 995 | 100 | Minus |
2R | 25286936 | 2R | 7719842..7719998 | 1256..1100 | 785 | 100 | Minus |
2R | 25286936 | 2R | 7729429..7729581 | 232..80 | 765 | 100 | Minus |
2R | 25286936 | 2R | 7729016..7729163 | 374..227 | 725 | 99.3 | Minus |
2R | 25286936 | 2R | 7719641..7719782 | 1395..1254 | 710 | 100 | Minus |
2R | 25286936 | 2R | 7728825..7728959 | 507..373 | 675 | 100 | Minus |
2R | 25286936 | 2R | 7725868..7725997 | 1000..871 | 650 | 100 | Minus |
2R | 25286936 | 2R | 7728267..7728381 | 619..505 | 575 | 100 | Minus |
2R | 25286936 | 2R | 7725689..7725792 | 1101..998 | 520 | 100 | Minus |
2R | 25286936 | 2R | 7729642..7729704 | 79..17 | 315 | 100 | Minus |
2R | 25286936 | 2R | 7719265..7719307 | 1636..1594 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:38:30 has no hits.
BO06154.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:08 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 1..1623 | 17..1637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:32 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 248..1867 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:49 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 251..1870 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:08 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 244..1867 | 10..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:08 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18812-RC | 251..1870 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:08 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7729642..7729704 | 17..79 | 100 | | Minus |
2R | 7728825..7728957 | 375..507 | 100 | <- | Minus |
2R | 7729016..7729158 | 232..374 | 100 | <- | Minus |
2R | 7729430..7729581 | 80..231 | 100 | <- | Minus |
2R | 7719263..7719306 | 1595..1638 | 95 | <- | Minus |
2R | 7719376..7719574 | 1396..1594 | 100 | <- | Minus |
2R | 7719641..7719780 | 1256..1395 | 100 | <- | Minus |
2R | 7719843..7719996 | 1102..1255 | 100 | <- | Minus |
2R | 7725689..7725789 | 1001..1101 | 100 | <- | Minus |
2R | 7725868..7725995 | 873..1000 | 100 | <- | Minus |
2R | 7727942..7728196 | 618..872 | 100 | <- | Minus |
2R | 7728269..7728378 | 508..617 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:49 Download gff for
BO06154.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3606768..3606811 | 1595..1638 | 95 | <- | Minus |
arm_2R | 3606881..3607079 | 1396..1594 | 100 | <- | Minus |
arm_2R | 3607146..3607285 | 1256..1395 | 100 | <- | Minus |
arm_2R | 3607348..3607501 | 1102..1255 | 100 | <- | Minus |
arm_2R | 3613194..3613294 | 1001..1101 | 100 | <- | Minus |
arm_2R | 3613373..3613500 | 873..1000 | 100 | <- | Minus |
arm_2R | 3615447..3615701 | 618..872 | 100 | <- | Minus |
arm_2R | 3615774..3615883 | 508..617 | 100 | <- | Minus |
arm_2R | 3616330..3616462 | 375..507 | 100 | <- | Minus |
arm_2R | 3616521..3616663 | 232..374 | 100 | <- | Minus |
arm_2R | 3616935..3617086 | 80..231 | 100 | <- | Minus |
arm_2R | 3617147..3617209 | 17..79 | 100 | | Minus |
BO06154.pep Sequence
Translation from 16 to 1654
> BO06154.pep
MRLDTNSNVDFKAFESSSSSCPVKLDNLATWGGSQKTDTRLPITDYSNLG
GPRHNRSPFPLCKDVNNRFVIWDGDMTTLEVDAITNTSDETLTESNSISE
RIFAVAGNQLREELSTTVKECRTGDVRITRGYNLPAKYVLHTVAPAYREK
FKTAAENTLHCCYRNVLCKAKELNLHTIALCNISAHQKSFPADVAAHIAL
RTIRRYLDKCTLQVVILCVGSSERGTYEVLAPLYFPRDQLEERSALWQLP
KDIGGEFGEPQHPDPDRQIRIIRNPQHSVHMRHHLADDDSDVSPHDMEGN
SSDLEYGARDMNGLSLNSYSSGLQAQLQRDLDRQHLLSDRPRTGVYENVI
SEGVEGIEHQERYERLLRRAQVEDLTEVSGIGCLYQSGVDRLGRPVIVFC
GKWFPAQNIDLEKALLYLIKLLDPIVKGDYVISYFHTLTSTNNYPSLHWL
REVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTTFMAPAIKAKVHSLP
GVEHLYSAITKDQLEIPAYITEYDMATNGLHYFNPVPTASASFLDH
BO06154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:22:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18812-PC | 540 | CG18812-PC | 1..540 | 1..540 | 2874 | 100 | Plus |
CG18812-PF | 534 | CG18812-PF | 1..534 | 1..540 | 2826 | 98.9 | Plus |
CG18812-PD | 264 | CG18812-PD | 10..264 | 286..540 | 1356 | 99.6 | Plus |
CG18812-PB | 244 | CG18812-PB | 1..244 | 297..540 | 1298 | 100 | Plus |
CG18812-PA | 217 | CG18812-PA | 37..217 | 360..540 | 973 | 99.4 | Plus |